2E52A

Crystal structural analysis of hindiii restriction endonuclease in complex with cognate dna at 2.0 angstrom resolution
Total Genus 116

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
116
sequence length
299
structure length
299
Chain Sequence
KKSALEKLLSLIENLTNQEFKQATNSLISFIYKLNRNEVIELVRSIGILPEAIKPSSTQEKLFSKAGDIVLAKAFQLLNLNSKPLEQRGNAGDVIALSKEFNYGLVADAKSFRLSRTAKNQKDFKVKALSEWREDKDYAVLTAPFFQYPTTKSQIFKQSLDENVLLFSWEHLAILLQLDLEETNIFSFEQLWNFPKKQSKKTSVSDAENNFMRDFNKYFMDLFKIDKDTLNQLLQKEINFIEERSLIEKEYWKKQINIIKNFTREEAIEALLKDINMSSKIETIDSFIKGIKSNDRLYL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (4-14)AH3 (36-46)AH4 (58-78)TI1 (15-18)AH2 (20-33)TVIII1 (46-49)AH10 (227-260)TI2 (50-53)TII1 (54-57)AH11 (264-274)TI4 (113-116)EMPTYTI3 (98-101)TII2 (88-91)AH5 (126-133)S2 (94-98)S4 (138-143)3H1 (121-124)AH6 (154-162)TII'1 (133-136)AH8 (188-200)AH7 (169-178)3H2 (145-147)S5 (164-168)TIV1 (149-152)TI6 (206-209)AH9 (211-223)3H3 (204-206)O1 (275-277)AH12 (277-292)S1 (80-84)S3 (104-109)TI5 (183-186)3H4 (294-296)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Haemophilus influenzae
publication title Structures of restriction endonuclease HindIII in complex with its cognate DNA and divalent cations
pubmed doi rcsb
molecule keywords Type II restriction enzyme HindIII
total genus 116
structure length 299
sequence length 299
chains with identical sequence B, C, D
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2006-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09518 RE_HindIII HindIII restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.70 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 2e52A01
3WVKA 3WVIA 3WVPA 3A4KA 2E52A 3WVGA 3WVHA
chains in the Genus database with same CATH superfamily
4E5HA 4AWMA 3DW9A 3N78A 5EGAA 1KNVA 4ZQQA 3WVPA 3MQYA 4F0QA 4AWGA 4E5EA 4NFZA 3V1ZA 5D4GA 5CL0A 3HW4A 4YYLA 3BAMA 1SDOA 1CFRA 1BHMA 3CAEA 2P14A 4E5GA 1DC1A 3HW6A 4E5JA 3V20A 1M0IA 4E5LA 3DVOA 1ESGA 3HW5A 5FDDA 5DESA 3N7BA 4R28A 3ODHA 5D8UA 3MQ6A 4AWFA 5CZNA 2GB7A 3DPGA 4AVGA 2EWFA 2FOKA 4AVLA 4AWKA 4E5IA 5DBSA 4AVQA 4CGXA 1D2IA 5D9JA 5I13A 2E52A 1FOKA 2PFJA 3WVIA 3A4KA 5JHVA 2XI7A 5FDGA 3BM3A 4OC8A 2FQZA 5CGVA 1VRRA 3EBJA 5CCYA 4CGSA 3V21A 2XI5A 4F0PA 3WVGA 5D2OA 4ZI0A 1FZRA 2BAMA 4ZHZA 3WVKA 3HW3A 5JHTA 4AWHA 5D42A 2P0JA 4E5FA 4CHCA 3WVHA 1BAMA 5DEBA 1ES8A 1DFMA 1M0DA
chains in the Genus database with same CATH topology
4E5HA 4AWMA 3DW9A 3N78A 5EGAA 1KNVA 4ZQQA 3WVPA 3MQYA 4F0QA 4AWGA 4E5EA 4NFZA 3V1ZA 5D4GA 5CL0A 3HW4A 4YYLA 3BAMA 1SDOA 1CFRA 1BHMA 3CAEA 2P14A 4E5GA 1DC1A 3HW6A 4E5JA 3V20A 1M0IA 4E5LA 3DVOA 1ESGA 3HW5A 5FDDA 5DESA 3N7BA 4R28A 3ODHA 5D8UA 3MQ6A 4AWFA 5CZNA 2GB7A 3DPGA 4AVGA 2EWFA 2FOKA 4AVLA 4AWKA 4E5IA 5DBSA 4AVQA 4CGXA 1D2IA 5D9JA 5I13A 2E52A 1FOKA 2PFJA 3WVIA 3A4KA 5JHVA 2XI7A 5FDGA 3BM3A 4OC8A 2FQZA 5CGVA 1VRRA 3EBJA 5CCYA 4CGSA 3V21A 2XI5A 4F0PA 3WVGA 5D2OA 4ZI0A 1FZRA 2BAMA 4ZHZA 3WVKA 3HW3A 5JHTA 4AWHA 5D42A 2P0JA 4E5FA 4CHCA 3WVHA 1BAMA 5DEBA 1ES8A 1DFMA 1M0DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WVK A;  3WVI A;  3WVP A;  3A4K A;  2E52 A;  3WVG A;  3WVH A; 
#chains in the Genus database with same CATH topology
 4E5H A;  4AWM A;  3DW9 A;  3N78 A;  5EGA A;  1KNV A;  4ZQQ A;  3WVP A;  3MQY A;  4F0Q A;  4AWG A;  4E5E A;  4NFZ A;  3V1Z A;  5D4G A;  5CL0 A;  3HW4 A;  4YYL A;  3BAM A;  1SDO A;  1CFR A;  1BHM A;  3CAE A;  2P14 A;  4E5G A;  1DC1 A;  3HW6 A;  4E5J A;  3V20 A;  1M0I A;  4E5L A;  3DVO A;  1ESG A;  3HW5 A;  5FDD A;  5DES A;  3N7B A;  4R28 A;  3ODH A;  5D8U A;  3MQ6 A;  4AWF A;  5CZN A;  2GB7 A;  3DPG A;  4AVG A;  2EWF A;  2FOK A;  4AVL A;  4AWK A;  4E5I A;  5DBS A;  4AVQ A;  4CGX A;  1D2I A;  5D9J A;  5I13 A;  2E52 A;  1FOK A;  2PFJ A;  3WVI A;  3A4K A;  5JHV A;  2XI7 A;  5FDG A;  3BM3 A;  4OC8 A;  2FQZ A;  5CGV A;  1VRR A;  3EBJ A;  5CCY A;  4CGS A;  3V21 A;  2XI5 A;  4F0P A;  3WVG A;  5D2O A;  4ZI0 A;  1FZR A;  2BAM A;  4ZHZ A;  3WVK A;  3HW3 A;  5JHT A;  4AWH A;  5D42 A;  2P0J A;  4E5F A;  4CHC A;  3WVH A;  1BAM A;  5DEB A;  1ES8 A;  1DFM A;  1M0D A; 
#chains in the Genus database with same CATH homology
 4E5H A;  4AWM A;  3DW9 A;  3N78 A;  5EGA A;  1KNV A;  4ZQQ A;  3WVP A;  3MQY A;  4F0Q A;  4AWG A;  4E5E A;  4NFZ A;  3V1Z A;  5D4G A;  5CL0 A;  3HW4 A;  4YYL A;  3BAM A;  1SDO A;  1CFR A;  1BHM A;  3CAE A;  2P14 A;  4E5G A;  1DC1 A;  3HW6 A;  4E5J A;  3V20 A;  1M0I A;  4E5L A;  3DVO A;  1ESG A;  3HW5 A;  5FDD A;  5DES A;  3N7B A;  4R28 A;  3ODH A;  5D8U A;  3MQ6 A;  4AWF A;  5CZN A;  2GB7 A;  3DPG A;  4AVG A;  2EWF A;  2FOK A;  4AVL A;  4AWK A;  4E5I A;  5DBS A;  4AVQ A;  4CGX A;  1D2I A;  5D9J A;  5I13 A;  2E52 A;  1FOK A;  2PFJ A;  3WVI A;  3A4K A;  5JHV A;  2XI7 A;  5FDG A;  3BM3 A;  4OC8 A;  2FQZ A;  5CGV A;  1VRR A;  3EBJ A;  5CCY A;  4CGS A;  3V21 A;  2XI5 A;  4F0P A;  3WVG A;  5D2O A;  4ZI0 A;  1FZR A;  2BAM A;  4ZHZ A;  3WVK A;  3HW3 A;  5JHT A;  4AWH A;  5D42 A;  2P0J A;  4E5F A;  4CHC A;  3WVH A;  1BAM A;  5DEB A;  1ES8 A;  1DFM A;  1M0D A; 
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similar chains in the pdb database (?% sequence similarity)

 
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