2FHZ | Genus

Total Genus 34

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	34
sequence length	106
structure length	106
Chain Sequence	KLFEHTVLYDSGDAFFELKGNASMKLSPKAAIEVCNEAAKKGLWILGIDGGHWLNPGFRIDSSASWTYDMPEEYKSKIPENNRLAIENIKDDIENGYTAFIITLKM

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Molecular basis of inhibition of the ribonuclease activity in colicin e5 by its cognate immunity protein pubmed doi rcsb
molecule keywords	Colicin-E5 immunity protein
molecule tags	Immune system, hydrolase
source organism	Escherichia coli
total genus	34
structure length	106
sequence length	106
ec nomenclature
pdb deposition date	2005-12-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF11480	ImmE5	Colicin-E5 Imm protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.190.30	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	2fhzA00

2DFXI 2FHZA
chains in the Genus database with same CATH superfamily

1UW9C 1U63A 1AUSS 1BXNI 3AXMS 4RUBS 4DFCB 1BWVS 4LQ4A 1RSCI 1MZPA 1AD2A 1AA1C 3FPNA 1RLCS 2DFXI 5DM60 4F0MB 1SVDM 5DM70 1WDDS 1CJSA 1RCOC 1UZDC 1EJ7S 3QOYA 2HW8A 2VDHI 1IWAB 3ZQJA 4QG3A 3UMYA 3TG8A 4HHHS 3U56A 1DWUA 1UWAC 1RBOC 1ZHOA 3ZXWB 4QGBA 1I2AA 3RUBS 1UZHC 2VDII 2YBVB 4QVIA 1RBLI 2V6AI 3AXKS 4F0HB 1UPPI 4MKVS 4REOA 1IR21 2V68I 2V69I 4F0KB 8RUCI 1UPMC 1IR1S 2V67I 1RXOC 3U4MA 1RCXC 4F9TA 2V63I 1GK8I 1RLDS 2FHZA
chains in the Genus database with same CATH topology

2FHZA 1U63A 1MZPA 4DFCB 4LQ4A 1AD2A 3FPNA 5DM60 2DFXI 5DM70 1CJSA 2HW8A 3ZQJA 4QG3A 3UMYA 3TG8A 3U56A 1DWUA 1ZHOA 4QGBA 1I2AA 4QVIA 4REOA 3U4MA 4F9TA 3QOYA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2DFX I;  2FHZ A; 
#chains in the Genus database with same CATH topology
 1UW9 C;  1U63 A;  1AUS S;  1BXN I;  3AXM S;  4RUB S;  4DFC B;  1BWV S;  4LQ4 A;  1RSC I;  1MZP A;  1AD2 A;  1AA1 C;  3FPN A;  1RLC S;  2DFX I;  5DM6 0;  4F0M B;  1SVD M;  5DM7 0;  1WDD S;  1CJS A;  1RCO C;  1UZD C;  1EJ7 S;  3QOY A;  2HW8 A;  2VDH I;  1IWA B;  3ZQJ A;  4QG3 A;  3UMY A;  3TG8 A;  4HHH S;  3U56 A;  1DWU A;  1UWA C;  1RBO C;  1ZHO A;  3ZXW B;  4QGB A;  1I2A A;  3RUB S;  1UZH C;  2VDI I;  2YBV B;  4QVI A;  1RBL I;  2V6A I;  3AXK S;  4F0H B;  1UPP I;  4MKV S;  4REO A;  1IR2 1;  2V68 I;  2V69 I;  4F0K B;  8RUC I;  1UPM C;  1IR1 S;  2V67 I;  1RXO C;  3U4M A;  1RCX C;  4F9T A;  2V63 I;  1GK8 I;  1RLD S;  2FHZ A; 
#chains in the Genus database with same CATH homology
 2FHZ A;  1U63 A;  1MZP A;  4DFC B;  4LQ4 A;  1AD2 A;  3FPN A;  5DM6 0;  2DFX I;  5DM7 0;  1CJS A;  2HW8 A;  3ZQJ A;  4QG3 A;  3UMY A;  3TG8 A;  3U56 A;  1DWU A;  1ZHO A;  4QGB A;  1I2A A;  4QVI A;  4REO A;  3U4M A;  4F9T A;  3QOY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2FHZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations