The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
17
|
sequence length |
82
|
structure length |
82
|
Chain Sequence |
MALIMTQQNNPLHGITLQKLLTELVEHYGWEELSYMVNINCFKKDPSIKSSLKFLRKTDWARERVENIYLKLQRHKERNQLE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Solution NMR structure of VF0530 from Vibrio fischeri reveals a nucleic acid-binding function.
pubmed doi rcsb |
| molecule keywords |
Uncharacterized protein
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Vibrio fischeri
|
| total genus |
17
|
| structure length |
82
|
| sequence length |
82
|
| ec nomenclature | |
| pdb deposition date | 2007-09-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09905 | VF530 | DNA-binding protein VF530 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 | SAP domain |
#chains in the Genus database with same CATH superfamily 1JEQ A; 2KVE A; 1V66 A; 1H1J S; 4BIT A; 2KVD A; 2JVW A; 2RNN A; 2KVU A; 2RNO A; 2WQG A; 2KW9 A; 1ZBH A; 4UZW A; 1JJR A; #chains in the Genus database with same CATH topology 1JEI A; 1JEQ A; 2DK4 A; 2KVE A; 5CIU A; 1GJJ A; 1E7L A; 2JVW A; 2ODG C; 2KW9 A; 1H9F A; 4UZW A; 1JJR A; 1EN7 A; 3QKJ A; 1ZS9 A; 1Y02 A; 1A62 A; 1A8V A; 2KVD A; 2W51 A; 2WQG A; 2QNF A; 1YNS A; 3LLR A; 2HJQ A; 1ZBH A; 2A8V A; 1V66 A; 4BIT A; 1H9E A; 2RNN A; 2RNO A; 1KHC A; 2ODC I; 2MPH A; 1A63 A; 3L0O A; 2KFV A; 2LD7 A; 2LC3 A; 1H1J S; 1E7D A; 2KVU A; 2QNC A; 3FLG A; 1GKU B; 2G80 A; 1GL9 B; #chains in the Genus database with same CATH homology 1JEQ A; 2KVE A; 1V66 A; 1H1J S; 4BIT A; 2KVD A; 2JVW A; 2RNN A; 2KVU A; 2RNO A; 2WQG A; 2KW9 A; 1ZBH A; 4UZW A; 1JJR A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
