2KBBA

Nmr structure of the talin rod domain, 1655-1822
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
174
structure length
174
Chain Sequence
GIDPFTAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAASAAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of an interdomain complex that regulates talin activity.
pubmed doi rcsb
molecule tags Structural protein
source organism Mus musculus
molecule keywords Talin-1
total genus 70
structure length 174
sequence length 174
ec nomenclature
pdb deposition date 2008-11-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.10 Mainly Alpha Up-down Bundle A middle domain of Talin 1 Talin, central domain 2kbbA00
4W8PA 2L10A 2L7NA 5FZTA 2X0CA 4F7GB 2KGXA 1SJ7A 2KBBA 2KVPA 3FYQA 1SJ8A 3AY5A 3DYJA
chains in the Genus database with same CATH superfamily
5HYAA 2X0CA 5FZTA 3WURA 5JDHA 1SJ7A 2KBBA 3FYQA 5HWYA 3AT7A 5HXEA 3DYJA 5HXRA 3V5SA 5HXHA 2KVPA 4BGOA 5T1DA 5JDGA 2MTCA 3VJZA 5JDNA 5HXSA 2L10A 2L7NA 4F7GB 2KGXA 4ECGA 3WSCA 3M1CA 4ONRA 3AY5A 5JDMA 3V5UA 3PHF1 4W8PA 5JDQA 5HXCA 5JDLA 2XQYA 2LQUA 1SJ8A 3PF0A 5JDFA 5HWXA
chains in the Genus database with same CATH topology
4W8PA 2L10A 2L7NA 5FZTA 2X0CA 4F7GB 2KGXA 1SJ7A 2KBBA 2KVPA 3FYQA 1SJ8A 3AY5A 3DYJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W8P A;  2L10 A;  2L7N A;  5FZT A;  2X0C A;  4F7G B;  2KGX A;  1SJ7 A;  2KBB A;  2KVP A;  3FYQ A;  1SJ8 A;  3AY5 A;  3DYJ A; 
#chains in the Genus database with same CATH topology
 5HYA A;  2X0C A;  5FZT A;  3WUR A;  5JDH A;  1SJ7 A;  2KBB A;  3FYQ A;  5HWY A;  3AT7 A;  5HXE A;  3DYJ A;  5HXR A;  3V5S A;  5HXH A;  2KVP A;  4BGO A;  5T1D A;  5JDG A;  2MTC A;  3VJZ A;  5JDN A;  5HXS A;  2L10 A;  2L7N A;  4F7G B;  2KGX A;  4ECG A;  3WSC A;  3M1C A;  4ONR A;  3AY5 A;  5JDM A;  3V5U A;  3PHF 1;  4W8P A;  5JDQ A;  5HXC A;  5JDL A;  2XQY A;  2LQU A;  1SJ8 A;  3PF0 A;  5JDF A;  5HWX A; 
#chains in the Genus database with same CATH homology
 4W8P A;  2L10 A;  2L7N A;  5FZT A;  2X0C A;  4F7G B;  2KGX A;  1SJ7 A;  2KBB A;  2KVP A;  3FYQ A;  1SJ8 A;  3AY5 A;  3DYJ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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