2KBBA

Nmr structure of the talin rod domain, 1655-1822
Total Genus 70
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
174
structure length
174
Chain Sequence
GIDPFTAPGQLECETAIAALNSCLRDLDQASLAAVSQQLAPREGISQEALHTQMLTAVQEISHLIEPLASAARAEASQLGHKVSQMAQYFEPLTLAAVGAASKTLSHPQQMALLDQTKTLAESALQLLYTAKEAGGNPKQAAHTQEALEEAVQMMTEAVEDLTTTLNEAASAAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The structure of an interdomain complex that regulates talin activity.
pubmed doi rcsb
molecule tags Structural protein
source organism Mus musculus
molecule keywords Talin-1
total genus 70
structure length 174
sequence length 174
ec nomenclature
pdb deposition date 2008-11-24
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.10 Mainly Alpha Up-down Bundle A middle domain of Talin 1 Talin, central domain 2kbbA00
2X0CA 4W8PA 3AY5A 5FZTA 4F7GB 2L10A 2L7NA 1SJ8A 2KGXA 3FYQA 3DYJA 2KBBA 2KVPA 1SJ7A
chains in the Genus database with same CATH superfamily
2X0CA 4ONRA 3V5UA 3WSCA 5HXHA 5HXRA 3PHF1 5JDGA 2XQYA 5HXCA 2KBBA 5HXEA 5JDFA 5JDLA 3AT7A 3AY5A 3VJZA 5HYAA 3V5SA 5JDHA 4BGOA 1SJ8A 3FYQA 3DYJA 2KVPA 2MTCA 2LQUA 4ECGA 5HWXA 4W8PA 5FZTA 5T1DA 5JDMA 1SJ7A 4F7GB 5JDQA 3WURA 5HWYA 2L7NA 5HXSA 2KGXA 3PF0A 3M1CA 2L10A 5JDNA
chains in the Genus database with same CATH topology
2X0CA 4W8PA 3AY5A 5FZTA 4F7GB 2L10A 2L7NA 1SJ8A 2KGXA 3FYQA 3DYJA 2KBBA 2KVPA 1SJ7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X0C A;  4W8P A;  3AY5 A;  5FZT A;  4F7G B;  2L10 A;  2L7N A;  1SJ8 A;  2KGX A;  3FYQ A;  3DYJ A;  2KBB A;  2KVP A;  1SJ7 A; 
#chains in the Genus database with same CATH topology
 2X0C A;  4ONR A;  3V5U A;  3WSC A;  5HXH A;  5HXR A;  3PHF 1;  5JDG A;  2XQY A;  5HXC A;  2KBB A;  5HXE A;  5JDF A;  5JDL A;  3AT7 A;  3AY5 A;  3VJZ A;  5HYA A;  3V5S A;  5JDH A;  4BGO A;  1SJ8 A;  3FYQ A;  3DYJ A;  2KVP A;  2MTC A;  2LQU A;  4ECG A;  5HWX A;  4W8P A;  5FZT A;  5T1D A;  5JDM A;  1SJ7 A;  4F7G B;  5JDQ A;  3WUR A;  5HWY A;  2L7N A;  5HXS A;  2KGX A;  3PF0 A;  3M1C A;  2L10 A;  5JDN A; 
#chains in the Genus database with same CATH homology
 2X0C A;  4W8P A;  3AY5 A;  5FZT A;  4F7G B;  2L10 A;  2L7N A;  1SJ8 A;  2KGX A;  3FYQ A;  3DYJ A;  2KBB A;  2KVP A;  1SJ7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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