3AT7A

Crystal structure of bacterial cell-surface alginate-binding protein algp7
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
251
structure length
251
Chain Sequence
VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif.
pubmed doi rcsb
molecule tags Structural protein
source organism Sphingomonas
molecule keywords Alginate-binding flagellin
total genus 99
structure length 251
sequence length 251
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3at7A00
3WSCA 4BGOA 3PF0A 3AT7A 4ECGA
chains in the Genus database with same CATH superfamily
5HXEA 1SJ7A 3WSCA 4F7GB 5FZTA 5HXRA 2MTCA 3VJZA 4ECGA 2X0CA 5JDLA 5JDMA 1SJ8A 3V5UA 3PF0A 5JDQA 5JDFA 3DYJA 5JDGA 3AT7A 3M1CA 2KGXA 2XQYA 5HXHA 2L7NA 5T1DA 3PHF1 4BGOA 2KBBA 2L10A 2LQUA 5HWYA 4W8PA 5HWXA 5HXSA 3WURA 2KVPA 5JDNA 3AY5A 3FYQA 4ONRA 3V5SA 5JDHA 5HYAA 5HXCA
chains in the Genus database with same CATH topology
5HXEA 3WSCA 5HXRA 3VJZA 2MTCA 4ECGA 5JDLA 5JDMA 3V5UA 3PF0A 5JDQA 5JDFA 5JDGA 3AT7A 3M1CA 2XQYA 5HXHA 5T1DA 3PHF1 4BGOA 2LQUA 5HWYA 5HWXA 5HXSA 3WURA 5JDNA 4ONRA 3V5SA 5JDHA 5HYAA 5HXCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSC A;  4BGO A;  3PF0 A;  3AT7 A;  4ECG A; 
#chains in the Genus database with same CATH topology
 5HXE A;  1SJ7 A;  3WSC A;  4F7G B;  5FZT A;  5HXR A;  2MTC A;  3VJZ A;  4ECG A;  2X0C A;  5JDL A;  5JDM A;  1SJ8 A;  3V5U A;  3PF0 A;  5JDQ A;  5JDF A;  3DYJ A;  5JDG A;  3AT7 A;  3M1C A;  2KGX A;  2XQY A;  5HXH A;  2L7N A;  5T1D A;  3PHF 1;  4BGO A;  2KBB A;  2L10 A;  2LQU A;  5HWY A;  4W8P A;  5HWX A;  5HXS A;  3WUR A;  2KVP A;  5JDN A;  3AY5 A;  3FYQ A;  4ONR A;  3V5S A;  5JDH A;  5HYA A;  5HXC A; 
#chains in the Genus database with same CATH homology
 5HXE A;  3WSC A;  5HXR A;  3VJZ A;  2MTC A;  4ECG A;  5JDL A;  5JDM A;  3V5U A;  3PF0 A;  5JDQ A;  5JDF A;  5JDG A;  3AT7 A;  3M1C A;  2XQY A;  5HXH A;  5T1D A;  3PHF 1;  4BGO A;  2LQU A;  5HWY A;  5HWX A;  5HXS A;  3WUR A;  5JDN A;  4ONR A;  3V5S A;  5JDH A;  5HYA A;  5HXC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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