2KSHA

Solution nmr structure of apo sterol carrier protein - 2 from aedes aegypti (aescp-2)
Total Genus 22
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
110
structure length
110
Chain Sequence
MSLKSDEVFAKIAKRLESIDPANRQVEHVYKFRITQGGKVVKNWVMDLKNVKLVESDDAAEATLTMEDDIMFAIGTGALPAKEAMAQDKMEVDGQVELIFLLEPFIASLK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Solution NMR structure of apo Sterol Carrier Protein - 2 from Aedes aegypti (AeSCP-2)
rcsb
molecule tags Lipid binding protein
source organism Aedes aegypti
molecule keywords Sterol carrier protein 2
total genus 22
structure length 110
sequence length 110
ec nomenclature
pdb deposition date 2010-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02036 SCP2 SCP-2 sterol transfer family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1050.10 Alpha Beta 2-Layer Sandwich Nonspecific Lipid-transfer Protein; Chain A SCP2 sterol-binding domain 2kshA00
2HV2A 2OZGA 5EBVA 5EC4A 4UEIA 2CFUA 3BKSA 5AIJA 2YHEA 3SXOA 4PDXA 3UY5A 1WFRA 5AJLA 2NBNA 2C0LB 3SXNA 3RYOA 5IV0A 2NBMA 4QB9A 3BDQA 3N7ZA 2KSIA 3CNUA 4NURA 4JGXA 5A23A 2I00A 2KSHA 1QNDA 3R1KA 4JD6A 3BN8A 2CG2A 2CFZA 2CX7A 2CG3A 1PZ4A 3BKRA 1IKTA 4AV7A 4MY0A 4AXHA 4MY3A 2QZTA 1C44A
chains in the Genus database with same CATH superfamily
2NSFA 2HV2A 2OZGA 2QZTA 5EBVA 5EC4A 4UEIA 2CFUA 3BKSA 5AIJA 2YHEA 3SXOA 4PDXA 3UY5A 4NSSA 5AJLA 2NBNA 2C0LB 3SXNA 3SSNA 3RYOA 5IV0A 2NBMA 4QB9A 4ZY7A 2NSGA 3BDQA 2KSIA 3CNUA 3N7ZA 4NURA 4JGXA 5A23A 2I00A 2KSHA 1QNDA 3R1KA 4JD6A 3BN8A 2CG2A 2CFZA 2CX7A 2CG3A 1PZ4A 3BKRA 1IKTA 4AV7A 4MY0A 4AXHA 4MY3A 3SSMA 1WFRA 3SSOA 1C44A
chains in the Genus database with same CATH topology
2HV2A 2OZGA 5EBVA 5EC4A 4UEIA 2CFUA 3BKSA 5AIJA 2YHEA 3SXOA 4PDXA 3UY5A 1WFRA 5AJLA 2NBNA 2C0LB 3SXNA 3RYOA 5IV0A 2NBMA 4QB9A 3BDQA 3N7ZA 2KSIA 3CNUA 4NURA 4JGXA 5A23A 2I00A 2KSHA 1QNDA 3R1KA 4JD6A 3BN8A 2CG2A 2CFZA 2CX7A 2CG3A 1PZ4A 3BKRA 1IKTA 4AV7A 4MY0A 4AXHA 4MY3A 2QZTA 1C44A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HV2 A;  2OZG A;  5EBV A;  5EC4 A;  4UEI A;  2CFU A;  3BKS A;  5AIJ A;  2YHE A;  3SXO A;  4PDX A;  3UY5 A;  1WFR A;  5AJL A;  2NBN A;  2C0L B;  3SXN A;  3RYO A;  5IV0 A;  2NBM A;  4QB9 A;  3BDQ A;  3N7Z A;  2KSI A;  3CNU A;  4NUR A;  4JGX A;  5A23 A;  2I00 A;  2KSH A;  1QND A;  3R1K A;  4JD6 A;  3BN8 A;  2CG2 A;  2CFZ A;  2CX7 A;  2CG3 A;  1PZ4 A;  3BKR A;  1IKT A;  4AV7 A;  4MY0 A;  4AXH A;  4MY3 A;  2QZT A;  1C44 A; 
#chains in the Genus database with same CATH topology
 2NSF A;  2HV2 A;  2OZG A;  2QZT A;  5EBV A;  5EC4 A;  4UEI A;  2CFU A;  3BKS A;  5AIJ A;  2YHE A;  3SXO A;  4PDX A;  3UY5 A;  4NSS A;  5AJL A;  2NBN A;  2C0L B;  3SXN A;  3SSN A;  3RYO A;  5IV0 A;  2NBM A;  4QB9 A;  4ZY7 A;  2NSG A;  3BDQ A;  2KSI A;  3CNU A;  3N7Z A;  4NUR A;  4JGX A;  5A23 A;  2I00 A;  2KSH A;  1QND A;  3R1K A;  4JD6 A;  3BN8 A;  2CG2 A;  2CFZ A;  2CX7 A;  2CG3 A;  1PZ4 A;  3BKR A;  1IKT A;  4AV7 A;  4MY0 A;  4AXH A;  4MY3 A;  3SSM A;  1WFR A;  3SSO A;  1C44 A; 
#chains in the Genus database with same CATH homology
 2HV2 A;  2OZG A;  5EBV A;  5EC4 A;  4UEI A;  2CFU A;  3BKS A;  5AIJ A;  2YHE A;  3SXO A;  4PDX A;  3UY5 A;  1WFR A;  5AJL A;  2NBN A;  2C0L B;  3SXN A;  3RYO A;  5IV0 A;  2NBM A;  4QB9 A;  3BDQ A;  3N7Z A;  2KSI A;  3CNU A;  4NUR A;  4JGX A;  5A23 A;  2I00 A;  2KSH A;  1QND A;  3R1K A;  4JD6 A;  3BN8 A;  2CG2 A;  2CFZ A;  2CX7 A;  2CG3 A;  1PZ4 A;  3BKR A;  1IKT A;  4AV7 A;  4MY0 A;  4AXH A;  4MY3 A;  2QZT A;  1C44 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...