2L7NA

Nmr structure of the b domain of talin
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
168
structure length
168
Chain Sequence
GIDPFTGPLEMDSALSVVQNLEKDLQEIKAAARDGKLKPLPGETMEKCTQDLGNSTKAVSSAIAKLLGEIAQGNENYAGIAARDVAGGLRSLAQAARGVAALTSDPAVQAIVLDTASDVLDKASSLIEEAKKASGHPGDPESQQRLAQVAKAVTQALNRCVSCLPGQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title RIAM and vinculin binding to talin are mutually exclusive and regulate adhesion assembly and turnover.
pubmed doi rcsb
molecule tags Structural protein
source organism Mus musculus
molecule keywords Talin-1
total genus 69
structure length 168
sequence length 168
ec nomenclature
pdb deposition date 2010-12-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.10 Mainly Alpha Up-down Bundle A middle domain of Talin 1 Talin, central domain 2l7nA00
1SJ8A 3DYJA 2KBBA 4W8PA 2KGXA 3AY5A 1SJ7A 3FYQA 2L7NA 5FZTA 2X0CA 2L10A 4F7GB 2KVPA
chains in the Genus database with same CATH superfamily
5HXSA 1SJ8A 4ECGA 2KGXA 3WURA 2MTCA 5JDNA 5HXCA 3V5SA 5JDGA 5JDQA 3AT7A 3PHF1 5JDFA 4W8PA 3VJZA 1SJ7A 5JDMA 4BGOA 2X0CA 5HXEA 5JDHA 3V5UA 3WSCA 3DYJA 3AY5A 5HWYA 2XQYA 5JDLA 5HWXA 4ONRA 3M1CA 3PF0A 5T1DA 5HXHA 2LQUA 5FZTA 2KBBA 5HYAA 3FYQA 2L7NA 5HXRA 2L10A 4F7GB 2KVPA
chains in the Genus database with same CATH topology
1SJ8A 3DYJA 2KBBA 4W8PA 2KGXA 3AY5A 1SJ7A 3FYQA 2L7NA 5FZTA 2X0CA 2L10A 4F7GB 2KVPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1SJ8 A;  3DYJ A;  2KBB A;  4W8P A;  2KGX A;  3AY5 A;  1SJ7 A;  3FYQ A;  2L7N A;  5FZT A;  2X0C A;  2L10 A;  4F7G B;  2KVP A; 
#chains in the Genus database with same CATH topology
 5HXS A;  1SJ8 A;  4ECG A;  2KGX A;  3WUR A;  2MTC A;  5JDN A;  5HXC A;  3V5S A;  5JDG A;  5JDQ A;  3AT7 A;  3PHF 1;  5JDF A;  4W8P A;  3VJZ A;  1SJ7 A;  5JDM A;  4BGO A;  2X0C A;  5HXE A;  5JDH A;  3V5U A;  3WSC A;  3DYJ A;  3AY5 A;  5HWY A;  2XQY A;  5JDL A;  5HWX A;  4ONR A;  3M1C A;  3PF0 A;  5T1D A;  5HXH A;  2LQU A;  5FZT A;  2KBB A;  5HYA A;  3FYQ A;  2L7N A;  5HXR A;  2L10 A;  4F7G B;  2KVP A; 
#chains in the Genus database with same CATH homology
 1SJ8 A;  3DYJ A;  2KBB A;  4W8P A;  2KGX A;  3AY5 A;  1SJ7 A;  3FYQ A;  2L7N A;  5FZT A;  2X0C A;  2L10 A;  4F7G B;  2KVP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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