2V68I

Crystal structure of chlamydomonas reinhardtii rubisco with large- subunit mutations v331a, t342i
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV7 (136-139)TI1 (15-18)TII1 (13-16)TI5 (134-137)S3 (104-111)S1 (39-45)S2 (74-76)TIV3 (70-73)TI2 (100-103)3H1 (47-49)TII3 (68-71)3H2 (55-59)TII2 (64-67)TIV2 (60-63)TII4 (80-83)TIV4 (75-78)AH2 (86-99)S4 (116-124)TI3 (112-115)TI4 (126-129)TIV1 (6-9)TIV5 (111-114)AH1 (23-36)Updating...
connected with : NaN
publication title Structural Analysis of Altered Large-Subunit Loop-6-Carboxy-Terminus Interactions that Influence Catalytic Efficiency and Co2 O2 Specificity of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase
pubmed doi rcsb
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
molecule tags Oxidoreductase
source organism Chlamydomonas reinhardtii
total genus 30
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2v68I00
2YBVB 1RBOC 3AXKS 1RSCI 2VDII 2V69I 1RLCS 8RUCI 1UPPI 4F0MB 1WDDS 1BXNI 1RCOC 1IWAB 2VDHI 1EJ7S 1UPMC 2V68I 1RCXC 2V67I 1IR21 1SVDM 1UZHC 2V63I 1GK8I 4F0KB 1RLDS 1IR1S 4RUBS 4F0HB 3ZXWB 4MKVS 2V6AI 1UW9C 1RXOC 1UWAC 1UZDC 1RBLI 3RUBS 4HHHS 1BWVS 3AXMS 1AA1C 1AUSS
chains in the Genus database with same CATH superfamily
2YBVB 1DWUA 1RBOC 2DFXI 3AXKS 1CJSA 1RSCI 4QGBA 1U63A 4DFCB 2VDII 2V69I 1RLCS 8RUCI 1UPPI 4REOA 4F0MB 1WDDS 3TG8A 1AD2A 1BXNI 1RCOC 3FPNA 1IWAB 2VDHI 3UMYA 1EJ7S 1UPMC 2V68I 1RCXC 2V67I 1IR21 1SVDM 1UZHC 2V63I 2HW8A 1GK8I 4F0KB 1RLDS 1MZPA 1IR1S 4QG3A 4F9TA 3U56A 4RUBS 5DM70 2FHZA 4F0HB 3ZXWB 1I2AA 5DM60 3QOYA 4MKVS 2V6AI 4QVIA 3ZQJA 1UW9C 4LQ4A 1RXOC 1UWAC 1UZDC 1RBLI 3RUBS 3U4MA 4HHHS 1BWVS 3AXMS 1ZHOA 1AA1C 1AUSS
chains in the Genus database with same CATH topology
2YBVB 1RBOC 3AXKS 1RSCI 2VDII 2V69I 1RLCS 8RUCI 1UPPI 4F0MB 1WDDS 1BXNI 1RCOC 1IWAB 2VDHI 1EJ7S 1UPMC 2V68I 1RCXC 2V67I 1IR21 1SVDM 1UZHC 2V63I 1GK8I 4F0KB 1RLDS 1IR1S 4RUBS 4F0HB 3ZXWB 4MKVS 2V6AI 1UW9C 1RXOC 1UWAC 1UZDC 1RBLI 3RUBS 4HHHS 1BWVS 3AXMS 1AA1C 1AUSS
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2YBV B;  1RBO C;  3AXK S;  1RSC I;  2VDI I;  2V69 I;  1RLC S;  8RUC I;  1UPP I;  4F0M B;  1WDD S;  1BXN I;  1RCO C;  1IWA B;  2VDH I;  1EJ7 S;  1UPM C;  2V68 I;  1RCX C;  2V67 I;  1IR2 1;  1SVD M;  1UZH C;  2V63 I;  1GK8 I;  4F0K B;  1RLD S;  1IR1 S;  4RUB S;  4F0H B;  3ZXW B;  4MKV S;  2V6A I;  1UW9 C;  1RXO C;  1UWA C;  1UZD C;  1RBL I;  3RUB S;  4HHH S;  1BWV S;  3AXM S;  1AA1 C;  1AUS S; 
#chains in the Genus database with same CATH topology
 2YBV B;  1DWU A;  1RBO C;  2DFX I;  3AXK S;  1CJS A;  1RSC I;  4QGB A;  1U63 A;  4DFC B;  2VDI I;  2V69 I;  1RLC S;  8RUC I;  1UPP I;  4REO A;  4F0M B;  1WDD S;  3TG8 A;  1AD2 A;  1BXN I;  1RCO C;  3FPN A;  1IWA B;  2VDH I;  3UMY A;  1EJ7 S;  1UPM C;  2V68 I;  1RCX C;  2V67 I;  1IR2 1;  1SVD M;  1UZH C;  2V63 I;  2HW8 A;  1GK8 I;  4F0K B;  1RLD S;  1MZP A;  1IR1 S;  4QG3 A;  4F9T A;  3U56 A;  4RUB S;  5DM7 0;  2FHZ A;  4F0H B;  3ZXW B;  1I2A A;  5DM6 0;  3QOY A;  4MKV S;  2V6A I;  4QVI A;  3ZQJ A;  1UW9 C;  4LQ4 A;  1RXO C;  1UWA C;  1UZD C;  1RBL I;  3RUB S;  3U4M A;  4HHH S;  1BWV S;  3AXM S;  1ZHO A;  1AA1 C;  1AUS S; 
#chains in the Genus database with same CATH homology
 2YBV B;  1RBO C;  3AXK S;  1RSC I;  2VDI I;  2V69 I;  1RLC S;  8RUC I;  1UPP I;  4F0M B;  1WDD S;  1BXN I;  1RCO C;  1IWA B;  2VDH I;  1EJ7 S;  1UPM C;  2V68 I;  1RCX C;  2V67 I;  1IR2 1;  1SVD M;  1UZH C;  2V63 I;  1GK8 I;  4F0K B;  1RLD S;  1IR1 S;  4RUB S;  4F0H B;  3ZXW B;  4MKV S;  2V6A I;  1UW9 C;  1RXO C;  1UWA C;  1UZD C;  1RBL I;  3RUB S;  4HHH S;  1BWV S;  3AXM S;  1AA1 C;  1AUS S;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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