2VDHI

Crystal structure of chlamydomonas reinhardtii rubisco with a large- subunit c172s mutation
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
139
structure length
139
Chain Sequence
MVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRPKTARDFQPANKRSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Consequences of the Replacement of Proximal Residues Cys-172 and Cys-192 in the Large Subunit of Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Chlamydomonas Reinhardtii
pubmed doi rcsb
molecule tags Lyase
source organism Chlamydomonas reinhardtii
molecule keywords RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN
total genus 29
structure length 139
sequence length 139
chains with identical sequence J, K, L, M, N, O, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2007-10-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
I PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 2vdhI00
4F0MB 1BXNI 2V63I 1RXOC 1IR21 2VDII 4F0KB 1RCXC 2V6AI 8RUCI 2V68I 2V67I 4HHHS 2V69I 1IWAB 1RSCI 1UPMC 1UZHC 1SVDM 2YBVB 4MKVS 1UWAC 1AA1C 3RUBS 3AXKS 4F0HB 3ZXWB 4RUBS 1UPPI 1GK8I 1RCOC 1WDDS 1AUSS 3AXMS 1BWVS 1RBLI 1RLDS 1EJ7S 1RLCS 2VDHI 1IR1S 1UZDC 1UW9C 1RBOC
chains in the Genus database with same CATH superfamily
4F0MB 1BXNI 2V63I 1RXOC 1IR21 4QGBA 2VDII 4F0KB 1RCXC 2FHZA 2V6AI 3UMYA 8RUCI 2V68I 3TG8A 2V67I 4HHHS 2DFXI 4LQ4A 4F9TA 2V69I 5DM70 1ZHOA 1IWAB 1RSCI 1UPMC 1UZHC 1SVDM 2YBVB 4MKVS 1UWAC 1AA1C 1DWUA 3RUBS 3U56A 1CJSA 3AXKS 3QOYA 4F0HB 4QG3A 1AD2A 4REOA 3ZXWB 4QVIA 4RUBS 5DM60 1UPPI 1GK8I 1RCOC 1WDDS 1AUSS 3AXMS 1BWVS 1RBLI 1RLDS 3ZQJA 1U63A 1MZPA 2HW8A 4DFCB 3FPNA 1EJ7S 1I2AA 1RLCS 3U4MA 2VDHI 1IR1S 1UZDC 1UW9C 1RBOC
chains in the Genus database with same CATH topology
4F0MB 1BXNI 2V63I 1RXOC 1IR21 2VDII 4F0KB 1RCXC 2V6AI 8RUCI 2V68I 2V67I 4HHHS 2V69I 1IWAB 1RSCI 1UPMC 1UZHC 1SVDM 2YBVB 4MKVS 1UWAC 1AA1C 3RUBS 3AXKS 4F0HB 3ZXWB 4RUBS 1UPPI 1GK8I 1RCOC 1WDDS 1AUSS 3AXMS 1BWVS 1RBLI 1RLDS 1EJ7S 1RLCS 2VDHI 1IR1S 1UZDC 1UW9C 1RBOC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4F0M B;  1BXN I;  2V63 I;  1RXO C;  1IR2 1;  2VDI I;  4F0K B;  1RCX C;  2V6A I;  8RUC I;  2V68 I;  2V67 I;  4HHH S;  2V69 I;  1IWA B;  1RSC I;  1UPM C;  1UZH C;  1SVD M;  2YBV B;  4MKV S;  1UWA C;  1AA1 C;  3RUB S;  3AXK S;  4F0H B;  3ZXW B;  4RUB S;  1UPP I;  1GK8 I;  1RCO C;  1WDD S;  1AUS S;  3AXM S;  1BWV S;  1RBL I;  1RLD S;  1EJ7 S;  1RLC S;  2VDH I;  1IR1 S;  1UZD C;  1UW9 C;  1RBO C; 
#chains in the Genus database with same CATH topology
 4F0M B;  1BXN I;  2V63 I;  1RXO C;  1IR2 1;  4QGB A;  2VDI I;  4F0K B;  1RCX C;  2FHZ A;  2V6A I;  3UMY A;  8RUC I;  2V68 I;  3TG8 A;  2V67 I;  4HHH S;  2DFX I;  4LQ4 A;  4F9T A;  2V69 I;  5DM7 0;  1ZHO A;  1IWA B;  1RSC I;  1UPM C;  1UZH C;  1SVD M;  2YBV B;  4MKV S;  1UWA C;  1AA1 C;  1DWU A;  3RUB S;  3U56 A;  1CJS A;  3AXK S;  3QOY A;  4F0H B;  4QG3 A;  1AD2 A;  4REO A;  3ZXW B;  4QVI A;  4RUB S;  5DM6 0;  1UPP I;  1GK8 I;  1RCO C;  1WDD S;  1AUS S;  3AXM S;  1BWV S;  1RBL I;  1RLD S;  3ZQJ A;  1U63 A;  1MZP A;  2HW8 A;  4DFC B;  3FPN A;  1EJ7 S;  1I2A A;  1RLC S;  3U4M A;  2VDH I;  1IR1 S;  1UZD C;  1UW9 C;  1RBO C; 
#chains in the Genus database with same CATH homology
 4F0M B;  1BXN I;  2V63 I;  1RXO C;  1IR2 1;  2VDI I;  4F0K B;  1RCX C;  2V6A I;  8RUC I;  2V68 I;  2V67 I;  4HHH S;  2V69 I;  1IWA B;  1RSC I;  1UPM C;  1UZH C;  1SVD M;  2YBV B;  4MKV S;  1UWA C;  1AA1 C;  3RUB S;  3AXK S;  4F0H B;  3ZXW B;  4RUB S;  1UPP I;  1GK8 I;  1RCO C;  1WDD S;  1AUS S;  3AXM S;  1BWV S;  1RBL I;  1RLD S;  1EJ7 S;  1RLC S;  2VDH I;  1IR1 S;  1UZD C;  1UW9 C;  1RBO C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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