The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
59
|
sequence length |
153
|
structure length |
144
|
Chain Sequence |
VYPLPENMVYRFDKSTNILDYLSTERDHVMMAVRYYMSKQRLDDLYRQLPTKTRSYIDIINIYCDKVSNDYMASTKSFTVYDINNEVNTIMLDNKGLGVRLATISFITELGRRCMNPVKTIKMFTLLSHTICDDCFVDYITDIS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Vaccinia Virus Anti-Apoptotic F1L is a Novel Bcl-2-Like Domain-Swapped Dimer that Binds a Highly Selective Subset of Bh3-Containing Death Ligands.
pubmed doi rcsb |
| molecule keywords |
PROTEIN F1
|
| molecule tags |
Apoptosis
|
| source organism |
Vaccinia virus
|
| total genus |
59
|
| structure length |
144
|
| sequence length |
153
|
| ec nomenclature | |
| pdb deposition date | 2008-05-19 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Apoptosis Regulator Bcl-x | Apoptosis Regulator Bcl-x |
#chains in the Genus database with same CATH superfamily 2O42 A; 2JBX A; 4D2L A; 2JBY A; 4UF1 A; 4UF2 A; 4UF3 A; 4D2M A; 2VTY A; #chains in the Genus database with same CATH topology 1R2I A; 4BD6 A; 4BD7 A; 4U2U A; 1K3K A; 1G5J A; 2VM6 A; 4M0S A; 2O2N A; 2JCN A; 3DVU A; 5C6H A; 2M5B A; 3ILC A; 2O2F A; 2VOI A; 4OYD A; 2ROC A; 5FDR A; 2ROD A; 1R2H A; 4HW4 A; 3WIY A; 5KU9 A; 2MHS A; 4UF2 A; 4BBD A; 2KUA A; 4HW2 A; 1YSI A; 4S0P A; 1PQ1 A; 2A5Y A; 4OQ6 A; 4B4S A; 2K7W A; 4G35 A; 3MK8 A; 4BPJ A; 2O21 A; 3I1H A; 2BZW A; 4ZIG A; 2ME8 A; 2NLA A; 4UF3 A; 5JSB A; 4QVX A; 4MI8 A; 4ZBF A; 1G5M A; 4ZIF A; 1TY4 A; 3KZ0 A; 1BXL A; 4ZIE A; 3KJ0 A; 3WIX A; 1YSG A; 3BL2 A; 3IO9 A; 5FMI A; 4BPI A; 2JBX A; 3QBR A; 2WH6 A; 4ZII A; 1WSX A; 5KTG A; 1MK3 A; 4HW3 A; 3PK1 A; 1YSN A; 2ABO A; 2NL9 A; 5FDO A; 4LQK A; 1LXL A; 1R2G A; 2K36 A; 2MEJ A; 1O0L A; 4QNQ A; 2JM6 B; 2XPX A; 2W3L A; 3CVA X; 2B48 A; 2VVW A; 1PQ0 A; 5IF4 A; 2UXE A; 4D2M A; 3IIH A; 5FC4 A; 4BDU A; 4ZIH A; 4BBC A; 4ZBI A; 2O42 A; 4U2V A; 4ZEQ A; 5IEZ A; 3D7V A; 1YSW A; 3IHD A; 2LR1 A; 2VOH A; 1F16 A; 1DDB A; 4S0O A; 2O2M A; 3IIG A; 2VOG A; 2XA0 A; 3KJ1 A; 2IMT A; 4YK9 A; 3MQP A; 4BD8 A; 2V6Q A; 2VOF A; 2I39 A; 2VTY A; 3IHC A; 1R2D A; 2O22 A; 3IHE A; 1AF3 A; 4YJ4 A; 2VVY A; 3KJ2 A; 1Q59 A; 2PQK A; 2BID A; 4BD2 A; 4D2L A; 2JBY A; 4K5B C; 1ZY3 A; 2YV6 A; 2IMS A; 1R2E A; 3JRV A; 2KBW A; 4WMR A; 1GJH A; 5C3F A; 1MAZ A; 4OQ5 A; 4BBB A; 4UF1 A; 2VVX A; 1OHU A; #chains in the Genus database with same CATH homology 4LQK A; 4UF3 A; 2K36 A; 2I39 A; 2VTY A; 4M0S A; 2VVW A; 2VVY A; 2UXE A; 4D2M A; 4BBC A; 2O42 A; 4D2L A; 2JBY A; 4UF2 A; 3JRV A; 4BBD A; 2JBX A; 4BBB A; 4UF1 A; 2VVX A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
