2XXN | Genus

Total Genus 24

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	143
structure length	143
Chain Sequence	TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFYPDRPHQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Homo sapiens
publication title	Bilateral Inhibition of Hausp Deubiquitinase by a Viral Interferon Regulatory Factor Protein pubmed doi rcsb
molecule keywords	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 7
total genus	24
structure length	143
sequence length	143
ec nomenclature	ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date	2010-11-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00917	MATH	MATH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	2xxnA00

1YZEA 4Z8MA 1YY6A 4KG9A 1LB6A 1FLKA 3HSVA 1LB4A 4X3GA 4GJHA 3HU6A 3IVQA 4JJQA 4CA1A 1CA9A 4K8UA 1QSCA 1LB5A 3MQRA 4I7CA 2FOOA 5E1TA 5H9MA 1CZYA 1RF3A 2F1XA 3IVVA 3MQSC 2GKWA 3ZJBA 2F1WA 3HQLA 2F1YA 2FOPA 4C9ZA 1F3VB 1D01A 2A25A 3HQHA 4GHUA 4O1VA 2F1ZA 2CR2A 1D0JA 1KZZA 1ZMSA 1L0AA 3IVBA 4YSIA 1CA4A 1FLLA 4I7BA 1D00A 4GWMA 2AN6A 3HQIA 1D0AA 4M4EA 3HQMA 4I7DA 2XXNA 1K2FA 4GWNA 1CZZA 2FOJA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1YZE A;  4Z8M A;  1YY6 A;  4KG9 A;  1LB6 A;  1FLK A;  3HSV A;  1LB4 A;  4X3G A;  4GJH A;  3HU6 A;  3IVQ A;  4JJQ A;  4CA1 A;  1CA9 A;  4K8U A;  1QSC A;  1LB5 A;  3MQR A;  4I7C A;  2FOO A;  5E1T A;  5H9M A;  1CZY A;  1RF3 A;  2F1X A;  3IVV A;  3MQS C;  2GKW A;  3ZJB A;  2F1W A;  3HQL A;  2F1Y A;  2FOP A;  4C9Z A;  1F3V B;  1D01 A;  2A25 A;  3HQH A;  4GHU A;  4O1V A;  2F1Z A;  2CR2 A;  1D0J A;  1KZZ A;  1ZMS A;  1L0A A;  3IVB A;  4YSI A;  1CA4 A;  1FLL A;  4I7B A;  1D00 A;  4GWM A;  2AN6 A;  3HQI A;  1D0A A;  4M4E A;  3HQM A;  4I7D A;  2XXN A;  1K2F A;  4GWN A;  1CZZ A;  2FOJ A; 
#chains in the Genus database with same CATH topology
 1YZE A;  4Z8M A;  1YY6 A;  4KG9 A;  1LB6 A;  1FLK A;  3HSV A;  1LB4 A;  4X3G A;  4GJH A;  3HU6 A;  3IVQ A;  4JJQ A;  4CA1 A;  1CA9 A;  4K8U A;  1QSC A;  1LB5 A;  3MQR A;  4I7C A;  2FOO A;  5E1T A;  5H9M A;  1CZY A;  1RF3 A;  2F1X A;  3IVV A;  3MQS C;  2GKW A;  3ZJB A;  2F1W A;  3HQL A;  2F1Y A;  2FOP A;  4C9Z A;  1F3V B;  1D01 A;  2A25 A;  3HQH A;  4GHU A;  4O1V A;  2F1Z A;  2CR2 A;  1D0J A;  1KZZ A;  1ZMS A;  1L0A A;  3IVB A;  4YSI A;  1CA4 A;  1FLL A;  4I7B A;  1D00 A;  4GWM A;  2AN6 A;  3HQI A;  1D0A A;  4M4E A;  3HQM A;  4I7D A;  2XXN A;  1K2F A;  4GWN A;  1CZZ A;  2FOJ A; 
#chains in the Genus database with same CATH homology
 1YZE A;  4Z8M A;  1YY6 A;  4KG9 A;  1LB6 A;  1FLK A;  3HSV A;  1LB4 A;  4X3G A;  4GJH A;  3HU6 A;  3IVQ A;  4JJQ A;  4CA1 A;  1CA9 A;  4K8U A;  1QSC A;  1LB5 A;  3MQR A;  4I7C A;  2FOO A;  5E1T A;  5H9M A;  1CZY A;  1RF3 A;  2F1X A;  3IVV A;  3MQS C;  2GKW A;  3ZJB A;  2F1W A;  3HQL A;  2F1Y A;  2FOP A;  4C9Z A;  1F3V B;  1D01 A;  2A25 A;  3HQH A;  4GHU A;  4O1V A;  2F1Z A;  2CR2 A;  1D0J A;  1KZZ A;  1ZMS A;  1L0A A;  3IVB A;  4YSI A;  1CA4 A;  1FLL A;  4I7B A;  1D00 A;  4GWM A;  2AN6 A;  3HQI A;  1D0A A;  4M4E A;  3HQM A;  4I7D A;  2XXN A;  1K2F A;  4GWN A;  1CZZ A;  2FOJ A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2XXNA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations