2YH9A

Crystal structure of the dimeric bame from e. coli
Total Genus 9
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
9
sequence length
66
structure length
66
Chain Sequence
VSKIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLTNIDNKP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural Basis of Outer Membrane Protein Biogenesis in Bacteria.
pubmed doi rcsb
molecule tags Membrane protein
source organism Escherichia coli
molecule keywords SMALL PROTEIN A
total genus 9
structure length 66
sequence length 66
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2011-04-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF04355 SmpA_OmlA SmpA / OmlA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 2yh9A00
2PXGA 1S0WC 2KXXA 3C4PB 3E2KC 2G2UB 2YH9A 3C7UB 5D0OE 5AYWE 1JTGB 2KM7A 2B5RC 3C4OB 1XXMC 3D4EA 3C7VB 3E2LC 5D0QE 2G2WB 3N4IB 3GMUB 5EKQE 4DM5A
chains in the Genus database with same CATH superfamily
2PXGA 1S0WC 2KXXA 3C4PB 3E2KC 4HSIA 2G2UB 2YH9A 3C7UB 5D0OE 5AYWE 2GUMA 1JTGB 4L1RA 2KM7A 2B5RC 3C4OB 1XXMC 3NWAA 3NWFA 3FVCA 3NW8A 3D4EA 3C7VB 3E2LC 5D0QE 2G2WB 3N4IB 3GMUB 5EKQE 4DM5A 3NWDA
chains in the Genus database with same CATH topology
2PXGA 1S0WC 2KXXA 3C4PB 3E2KC 4HSIA 2G2UB 2YH9A 3C7UB 5D0OE 5AYWE 2GUMA 1JTGB 4L1RA 2KM7A 2B5RC 3C4OB 1XXMC 3NWAA 3NWFA 3FVCA 3NW8A 3D4EA 3C7VB 3E2LC 5D0QE 2G2WB 3N4IB 3GMUB 5EKQE 4DM5A 3NWDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PXG A;  1S0W C;  2KXX A;  3C4P B;  3E2K C;  2G2U B;  2YH9 A;  3C7U B;  5D0O E;  5AYW E;  1JTG B;  2KM7 A;  2B5R C;  3C4O B;  1XXM C;  3D4E A;  3C7V B;  3E2L C;  5D0Q E;  2G2W B;  3N4I B;  3GMU B;  5EKQ E;  4DM5 A; 
#chains in the Genus database with same CATH topology
 2PXG A;  1S0W C;  2KXX A;  3C4P B;  3E2K C;  4HSI A;  2G2U B;  2YH9 A;  3C7U B;  5D0O E;  5AYW E;  2GUM A;  1JTG B;  4L1R A;  2KM7 A;  2B5R C;  3C4O B;  1XXM C;  3NWA A;  3NWF A;  3FVC A;  3NW8 A;  3D4E A;  3C7V B;  3E2L C;  5D0Q E;  2G2W B;  3N4I B;  3GMU B;  5EKQ E;  4DM5 A;  3NWD A; 
#chains in the Genus database with same CATH homology
 2PXG A;  1S0W C;  2KXX A;  3C4P B;  3E2K C;  4HSI A;  2G2U B;  2YH9 A;  3C7U B;  5D0O E;  5AYW E;  2GUM A;  1JTG B;  4L1R A;  2KM7 A;  2B5R C;  3C4O B;  1XXM C;  3NWA A;  3NWF A;  3FVC A;  3NW8 A;  3D4E A;  3C7V B;  3E2L C;  5D0Q E;  2G2W B;  3N4I B;  3GMU B;  5EKQ E;  4DM5 A;  3NWD A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...