3AT7A

Crystal structure of bacterial cell-surface alginate-binding protein algp7
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
251
structure length
251
Chain Sequence
VAPLDLVQPISDYKIYVSENLQTLVRDTREFTNAVKAGDVAKAKKLFASTRMSYERIEPIAELFSDLDASIDSRADDHEKAEKDPAFFGFHRIEYGLFAQNSAKGLAPVADKLMADVLELQKRIRGLTFPPEKVVGGAAVLMEEVAATKISGEEDRYSHTDLWDFQANFEGAKKIVDLFRPLVVKDNRAFADKVDANFDTVFKTLAKYRTADGGFELYGKLSERDRKVLAGRVNTLAEDLSKMRGLLGLDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif.
pubmed doi rcsb
molecule tags Structural protein
source organism Sphingomonas
molecule keywords Alginate-binding flagellin
total genus 99
structure length 251
sequence length 251
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3at7A00
3WSCA 4BGOA 3PF0A 4ECGA 3AT7A
chains in the Genus database with same CATH superfamily
2LQUA 4BGOA 5T1DA 4W8PA 5JDNA 5HXRA 5HYAA 5JDFA 3V5SA 3WURA 1SJ8A 2MTCA 4ONRA 5FZTA 5HWYA 3WSCA 2KBBA 2L7NA 3PHF1 5JDGA 3VJZA 3DYJA 5JDMA 5JDLA 3AY5A 4ECGA 5HXEA 2X0CA 2XQYA 3M1CA 5HXHA 2KVPA 3FYQA 5HXSA 1SJ7A 2KGXA 3V5UA 3PF0A 5HXCA 4F7GB 3AT7A 5JDHA 5JDQA 5HWXA 2L10A
chains in the Genus database with same CATH topology
2LQUA 4BGOA 5T1DA 5JDNA 5HXRA 5HYAA 5JDFA 3WURA 3V5SA 2MTCA 4ONRA 5HWYA 3WSCA 3PHF1 5JDGA 3VJZA 5JDMA 5JDLA 4ECGA 5HXEA 2XQYA 3M1CA 5HXHA 5HXSA 3V5UA 3PF0A 5HXCA 3AT7A 5JDHA 5JDQA 5HWXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSC A;  4BGO A;  3PF0 A;  4ECG A;  3AT7 A; 
#chains in the Genus database with same CATH topology
 2LQU A;  4BGO A;  5T1D A;  4W8P A;  5JDN A;  5HXR A;  5HYA A;  5JDF A;  3V5S A;  3WUR A;  1SJ8 A;  2MTC A;  4ONR A;  5FZT A;  5HWY A;  3WSC A;  2KBB A;  2L7N A;  3PHF 1;  5JDG A;  3VJZ A;  3DYJ A;  5JDM A;  5JDL A;  3AY5 A;  4ECG A;  5HXE A;  2X0C A;  2XQY A;  3M1C A;  5HXH A;  2KVP A;  3FYQ A;  5HXS A;  1SJ7 A;  2KGX A;  3V5U A;  3PF0 A;  5HXC A;  4F7G B;  3AT7 A;  5JDH A;  5JDQ A;  5HWX A;  2L10 A; 
#chains in the Genus database with same CATH homology
 2LQU A;  4BGO A;  5T1D A;  5JDN A;  5HXR A;  5HYA A;  5JDF A;  3WUR A;  3V5S A;  2MTC A;  4ONR A;  5HWY A;  3WSC A;  3PHF 1;  5JDG A;  3VJZ A;  5JDM A;  5JDL A;  4ECG A;  5HXE A;  2XQY A;  3M1C A;  5HXH A;  5HXS A;  3V5U A;  3PF0 A;  5HXC A;  3AT7 A;  5JDH A;  5JDQ A;  5HWX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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