3C4OB

Crystal structure of the shv-1 beta-lactamase/beta-lactamase inhibitor protein (blip) e73m/s130k/s146m complex
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQMKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLKCFDVDGYSSTGFYRGMAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase inhibitor
source organism Klebsiella pneumoniae
publication title Computational redesign of the SHV-1 beta-lactamase/beta-lactamase inhibitor protein interface.
pubmed doi rcsb
molecule keywords Beta-lactamase SHV-1
total genus 49
structure length 165
sequence length 165
ec nomenclature
pdb deposition date 2008-01-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3c4oB01
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 3c4oB02
1S0WC 3C4PB 3E2KC 2B5RC 2G2UB 2PXGA 2YH9A 5AYWE 1XXMC 5EKQE 3D4EA 2G2WB 5D0QE 2KM7A 2KXXA 3C7VB 3E2LC 3GMUB 1JTGB 4DM5A 3C7UB 3C4OB 3N4IB 5D0OE
chains in the Genus database with same CATH superfamily
1S0WC 3C4PB 3E2KC 3NWDA 2B5RC 4L1RA 2G2UB 2PXGA 2YH9A 5AYWE 3FVCA 1XXMC 5EKQE 3D4EA 2G2WB 5D0QE 2KM7A 2KXXA 3C7VB 2GUMA 3E2LC 3NWAA 3GMUB 1JTGB 4DM5A 3C7UB 4HSIA 3C4OB 3NWFA 3N4IB 5D0OE 3NW8A
chains in the Genus database with same CATH topology
1S0WC 3C4PB 3E2KC 3NWDA 2B5RC 4L1RA 2G2UB 2PXGA 2YH9A 5AYWE 3FVCA 1XXMC 5EKQE 3D4EA 2G2WB 5D0QE 2KM7A 2KXXA 3C7VB 2GUMA 3E2LC 3NWAA 3GMUB 1JTGB 4DM5A 3C7UB 4HSIA 3C4OB 3NWFA 3N4IB 5D0OE 3NW8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1S0W C;  3C4P B;  3E2K C;  2B5R C;  2G2U B;  2PXG A;  2YH9 A;  5AYW E;  1XXM C;  5EKQ E;  3D4E A;  2G2W B;  5D0Q E;  2KM7 A;  2KXX A;  3C7V B;  3E2L C;  3GMU B;  1JTG B;  4DM5 A;  3C7U B;  3C4O B;  3N4I B;  5D0O E; 
#chains in the Genus database with same CATH topology
 1S0W C;  3C4P B;  3E2K C;  3NWD A;  2B5R C;  4L1R A;  2G2U B;  2PXG A;  2YH9 A;  5AYW E;  3FVC A;  1XXM C;  5EKQ E;  3D4E A;  2G2W B;  5D0Q E;  2KM7 A;  2KXX A;  3C7V B;  2GUM A;  3E2L C;  3NWA A;  3GMU B;  1JTG B;  4DM5 A;  3C7U B;  4HSI A;  3C4O B;  3NWF A;  3N4I B;  5D0O E;  3NW8 A; 
#chains in the Genus database with same CATH homology
 1S0W C;  3C4P B;  3E2K C;  3NWD A;  2B5R C;  4L1R A;  2G2U B;  2PXG A;  2YH9 A;  5AYW E;  3FVC A;  1XXM C;  5EKQ E;  3D4E A;  2G2W B;  5D0Q E;  2KM7 A;  2KXX A;  3C7V B;  2GUM A;  3E2L C;  3NWA A;  3GMU B;  1JTG B;  4DM5 A;  3C7U B;  4HSI A;  3C4O B;  3NWF A;  3N4I B;  5D0O E;  3NW8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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