3C7U | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	165
structure length	165
Chain Sequence	AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLAFTDGVLQGKRQWDLV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfe7e750ff7f2e1b5c9e123/pdb.gz): 1167 ms

reading 165 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

165 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 20 ms

Adding embedded #jmolscript: select ({0:164});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/hydrolase inhibitor
source organism	Escherichia coli
publication title	Structural insight into the kinetics and DeltaCp of interactions between TEM-1 beta-lactamase and beta-lactamase inhibitory protein (BLIP) pubmed doi rcsb
molecule keywords	Beta-lactamase
total genus	49
structure length	165
sequence length	165
chains with identical sequence	D
ec nomenclature
pdb deposition date	2008-02-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF07467	BLIP	Beta-lactamase inhibitor (BLIP)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein; Chain:B, domain 1	Beta-lactamase Inhibitory Protein; Chain:B, domain 1	3c7uB01
3.30.1450.10	Alpha Beta	2-Layer Sandwich	Beta-lactamase Inhibitory Protein; Chain:B, domain 1	Beta-lactamase Inhibitory Protein; Chain:B, domain 1	3c7uB02

3C4OB 2G2UB 3GMUB 5EKQE 3C7VB 2KM7A 5D0QE 3E2LC 1JTGB 2PXGA 4DM5A 1XXMC 5AYWE 2G2WB 3C7UB 2B5RC 3N4IB 2YH9A 3C4PB 3D4EA 1S0WC 3E2KC 2KXXA 5D0OE
chains in the Genus database with same CATH superfamily

3C4OB 2G2UB 3GMUB 3NW8A 5EKQE 3C7VB 2KM7A 2GUMA 3FVCA 5D0QE 3E2LC 1JTGB 2PXGA 4DM5A 1XXMC 3NWAA 5AYWE 2G2WB 3C7UB 2B5RC 3N4IB 2YH9A 4L1RA 3C4PB 3D4EA 1S0WC 3E2KC 2KXXA 4HSIA 3NWDA 3NWFA 5D0OE
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3C4O B;  2G2U B;  3GMU B;  5EKQ E;  3C7V B;  2KM7 A;  5D0Q E;  3E2L C;  1JTG B;  2PXG A;  4DM5 A;  1XXM C;  5AYW E;  2G2W B;  3C7U B;  2B5R C;  3N4I B;  2YH9 A;  3C4P B;  3D4E A;  1S0W C;  3E2K C;  2KXX A;  5D0O E; 
#chains in the Genus database with same CATH topology
 3C4O B;  2G2U B;  3GMU B;  3NW8 A;  5EKQ E;  3C7V B;  2KM7 A;  2GUM A;  3FVC A;  5D0Q E;  3E2L C;  1JTG B;  2PXG A;  4DM5 A;  1XXM C;  3NWA A;  5AYW E;  2G2W B;  3C7U B;  2B5R C;  3N4I B;  2YH9 A;  4L1R A;  3C4P B;  3D4E A;  1S0W C;  3E2K C;  2KXX A;  4HSI A;  3NWD A;  3NWF A;  5D0O E; 
#chains in the Genus database with same CATH homology
 3C4O B;  2G2U B;  3GMU B;  3NW8 A;  5EKQ E;  3C7V B;  2KM7 A;  2GUM A;  3FVC A;  5D0Q E;  3E2L C;  1JTG B;  2PXG A;  4DM5 A;  1XXM C;  3NWA A;  5AYW E;  2G2W B;  3C7U B;  2B5R C;  3N4I B;  2YH9 A;  4L1R A;  3C4P B;  3D4E A;  1S0W C;  3E2K C;  2KXX A;  4HSI A;  3NWD A;  3NWF A;  5D0O E;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3C7UB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations