The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
56
|
sequence length |
195
|
structure length |
141
|
Chain Sequence |
SQSNRELVVDFLSYKLSQKGYSWSQFPMAAVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNAGRIVAFFSFGGALCVESVDKEMQVLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A conserved hydrophobic core at Bcl-x(L) mediates its structural stability and binding affinity with BH3-domain peptide of pro-apoptotic protein
pubmed doi rcsb |
| molecule tags |
Apoptosis
|
| source organism |
Homo sapiens
|
| molecule keywords |
Apoptosis regulator Bcl-X
|
| total genus |
56
|
| structure length |
141
|
| sequence length |
195
|
| ec nomenclature | |
| pdb deposition date | 2008-04-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| X | PF00452 | Bcl-2 | Apoptosis regulator proteins, Bcl-2 family |
| X | PF02180 | BH4 | Bcl-2 homology region 4 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Apoptosis Regulator Bcl-x | Blc2-like |
#chains in the Genus database with same CATH superfamily 4ZBF A; 4OQ6 A; 3WIX A; 2XPX A; 2NLA A; 2NL9 A; 5FMI A; 4HW4 A; 4YK9 A; 3PK1 A; 5FDR A; 3MQP A; 2ABO A; 4ZII A; 3MK8 A; 3IHC A; 1YSG A; 4OQ5 A; 3WIY A; 2WH6 A; 4B4S A; 2MHS A; 3ILC A; 5IEZ A; 4BD2 A; 2O21 A; 3IIH A; 3QBR A; 4ZEQ A; 4BD6 A; 2K7W A; 1YSW A; 4BD7 A; 1TY4 A; 3CVA X; 1LXL A; 2O2M A; 4S0P A; 4MI8 A; 5JSB A; 1R2G A; 2ROD A; 4HW3 A; 4K5B C; 1PQ1 A; 3I1H A; 4S0O A; 2A5Y A; 2KUA A; 3IHE A; 1ZY3 A; 1R2I A; 1MAZ A; 3KJ2 A; 1K3K A; 2B48 A; 2O22 A; 2ROC A; 4YJ4 A; 4G35 A; 1YSN A; 2BZW A; 2VOG A; 4BPI A; 2O2N A; 3D7V A; 2ME8 A; 2MEJ A; 3DVU A; 3KJ0 A; 3KJ1 A; 4QVX A; 5IF4 A; 3IO9 A; 3IHD A; 2VM6 A; 5FC4 A; 2IMT A; 4HW2 A; 1OHU A; 4OYD A; 4ZIF A; 5C6H A; 2PQK A; 3BL2 A; 1O0L A; 3IIG A; 4ZIE A; 4BDU A; 4WMR A; 2VOI A; 1DDB A; 2KBW A; 1G5J A; 1BXL A; 2JM6 B; 2LR1 A; 2V6Q A; 4U2U A; 2JCN A; 1MK3 A; 2W3L A; 1G5M A; 3KZ0 A; 1Q59 A; 4BPJ A; 2VOH A; 1AF3 A; 5KTG A; 2BID A; 2M5B A; 1F16 A; 4U2V A; 1WSX A; 4BD8 A; 2VOF A; 4ZBI A; 1YSI A; 1PQ0 A; 5FDO A; 5C3F A; 4QNQ A; 2YV6 A; 5KU9 A; 1R2E A; 2O2F A; 2XA0 A; 2IMS A; 1R2H A; 4ZIH A; 4ZIG A; 1GJH A; 1R2D A; #chains in the Genus database with same CATH topology 4ZBF A; 4OQ6 A; 3WIX A; 2XPX A; 4D2M A; 2NLA A; 2NL9 A; 4UF2 A; 5FMI A; 2VTY A; 4HW4 A; 4YK9 A; 3PK1 A; 5FDR A; 3MQP A; 2ABO A; 4ZII A; 3MK8 A; 3IHC A; 1YSG A; 4OQ5 A; 3WIY A; 2WH6 A; 4B4S A; 2MHS A; 3ILC A; 2O42 A; 5IEZ A; 4BD2 A; 2O21 A; 4BBB A; 3IIH A; 3QBR A; 4ZEQ A; 4BD6 A; 2K7W A; 1YSW A; 4BD7 A; 1TY4 A; 3CVA X; 1LXL A; 2O2M A; 4S0P A; 4MI8 A; 4LQK A; 5JSB A; 4BBD A; 1R2G A; 4UF1 A; 2ROD A; 4HW3 A; 4K5B C; 4BBC A; 4M0S A; 1PQ1 A; 3I1H A; 4S0O A; 2A5Y A; 2KUA A; 3IHE A; 1ZY3 A; 4D2L A; 1R2I A; 1MAZ A; 3KJ2 A; 1K3K A; 2B48 A; 2O22 A; 2ROC A; 4YJ4 A; 2JBX A; 4G35 A; 4UF3 A; 1YSN A; 2BZW A; 2VOG A; 4BPI A; 2O2N A; 3D7V A; 2ME8 A; 2MEJ A; 3DVU A; 3KJ0 A; 3KJ1 A; 4QVX A; 2VVY A; 5IF4 A; 3IO9 A; 3IHD A; 2VVW A; 2VM6 A; 5FC4 A; 2IMT A; 4HW2 A; 1OHU A; 4OYD A; 4ZIF A; 5C6H A; 2PQK A; 3BL2 A; 2K36 A; 1O0L A; 3IIG A; 4ZIE A; 4BDU A; 4WMR A; 2VOI A; 1DDB A; 2KBW A; 1G5J A; 1BXL A; 2JM6 B; 2LR1 A; 2V6Q A; 4U2U A; 2JCN A; 1MK3 A; 2W3L A; 1G5M A; 3KZ0 A; 1Q59 A; 4BPJ A; 2VOH A; 1AF3 A; 2VVX A; 2BID A; 5KTG A; 2M5B A; 1F16 A; 4U2V A; 1WSX A; 4BD8 A; 2VOF A; 4ZBI A; 2I39 A; 1YSI A; 1PQ0 A; 5FDO A; 5C3F A; 4QNQ A; 2YV6 A; 2JBY A; 5KU9 A; 1R2E A; 2O2F A; 2XA0 A; 2UXE A; 3JRV A; 2IMS A; 1R2H A; 4ZIH A; 4ZIG A; 1GJH A; 1R2D A; #chains in the Genus database with same CATH homology 4ZBF A; 4OQ6 A; 3WIX A; 2XPX A; 2NLA A; 2NL9 A; 5FMI A; 4HW4 A; 4YK9 A; 3PK1 A; 5FDR A; 3MQP A; 2ABO A; 4ZII A; 3MK8 A; 3IHC A; 1YSG A; 4OQ5 A; 3WIY A; 2WH6 A; 4B4S A; 2MHS A; 3ILC A; 5IEZ A; 4BD2 A; 2O21 A; 3IIH A; 3QBR A; 4ZEQ A; 4BD6 A; 2K7W A; 1YSW A; 4BD7 A; 1TY4 A; 3CVA X; 1LXL A; 2O2M A; 4S0P A; 4MI8 A; 5JSB A; 1R2G A; 2ROD A; 4HW3 A; 4K5B C; 1PQ1 A; 3I1H A; 4S0O A; 2A5Y A; 2KUA A; 3IHE A; 1ZY3 A; 1R2I A; 1MAZ A; 3KJ2 A; 1K3K A; 2B48 A; 2O22 A; 2ROC A; 4YJ4 A; 4G35 A; 1YSN A; 2BZW A; 2VOG A; 4BPI A; 2O2N A; 3D7V A; 2ME8 A; 2MEJ A; 3DVU A; 3KJ0 A; 3KJ1 A; 4QVX A; 5IF4 A; 3IO9 A; 3IHD A; 2VM6 A; 5FC4 A; 2IMT A; 4HW2 A; 1OHU A; 4OYD A; 4ZIF A; 5C6H A; 2PQK A; 3BL2 A; 1O0L A; 3IIG A; 4ZIE A; 4BDU A; 4WMR A; 2VOI A; 1DDB A; 2KBW A; 1G5J A; 1BXL A; 2JM6 B; 2LR1 A; 2V6Q A; 4U2U A; 2JCN A; 1MK3 A; 2W3L A; 1G5M A; 3KZ0 A; 1Q59 A; 4BPJ A; 2VOH A; 1AF3 A; 5KTG A; 2BID A; 2M5B A; 1F16 A; 4U2V A; 1WSX A; 4BD8 A; 2VOF A; 4ZBI A; 1YSI A; 1PQ0 A; 5FDO A; 5C3F A; 4QNQ A; 2YV6 A; 5KU9 A; 1R2E A; 2O2F A; 2XA0 A; 2IMS A; 1R2H A; 4ZIH A; 4ZIG A; 1GJH A; 1R2D A;
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