The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
28
|
sequence length |
118
|
structure length |
118
|
Chain Sequence |
SHMTIEQMVDRLLSYPERTKMQILAPIVSGKKGTHAKTLEDIRKQGYVRVRIDREMRELTGDIELEKNKKHSIDVVVDRIIIKDGIAARLADSLETALKLADGKVVVDVIGEGELLFS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A Structural Model for the Damage-sensing Complex in Bacterial Nucleotide Excision Repair.
pubmed doi rcsb |
| molecule tags |
Dna binding protein
|
| source organism |
Geobacillus stearothermophilus
|
| molecule keywords |
Geobacillus stearothermophilus UvrA interaction domain
|
| total genus |
28
|
| structure length |
118
|
| sequence length |
118
|
| ec nomenclature | |
| pdb deposition date | 2009-01-05 |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase | Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase |
#chains in the Genus database with same CATH superfamily 3FPN A; 5DM7 0; 3UMY A; 1MZP A; 1I2A A; 5DM6 0; 4QVI A; 4REO A; 3TG8 A; 3ZQJ A; 4F9T A; 4DFC B; 1U63 A; 3QOY A; 1AD2 A; 4QG3 A; 4LQ4 A; 1ZHO A; 4QGB A; 1CJS A; 3U4M A; 1DWU A; 2HW8 A; 3U56 A; #chains in the Genus database with same CATH topology 1UPM C; 1UW9 C; 4MKV S; 3FPN A; 2DFX I; 5DM7 0; 1AUS S; 1IR1 S; 1RBO C; 3UMY A; 2VDH I; 1I2A A; 1MZP A; 5DM6 0; 3ZXW B; 4QVI A; 4REO A; 2V69 I; 3TG8 A; 1IWA B; 1UPP I; 1RBL I; 2VDI I; 3ZQJ A; 4F9T A; 4F0K B; 4DFC B; 3AXK S; 3RUB S; 4F0H B; 1U63 A; 1WDD S; 2V67 I; 1EJ7 S; 2V68 I; 3QOY A; 1AA1 C; 1AD2 A; 1BXN I; 4HHH S; 4RUB S; 4QG3 A; 1RCX C; 3AXM S; 1RLD S; 1RXO C; 4LQ4 A; 1RSC I; 1UWA C; 1ZHO A; 1RCO C; 2HW8 A; 1CJS A; 4QGB A; 2V63 I; 1UZD C; 8RUC I; 3U4M A; 1GK8 I; 1SVD M; 1UZH C; 2YBV B; 1DWU A; 1BWV S; 2V6A I; 4F0M B; 2FHZ A; 3U56 A; 1RLC S; 1IR2 1; #chains in the Genus database with same CATH homology 3FPN A; 2DFX I; 5DM7 0; 3UMY A; 1MZP A; 1I2A A; 5DM6 0; 4QVI A; 4REO A; 3TG8 A; 3ZQJ A; 4F9T A; 4DFC B; 1U63 A; 3QOY A; 1AD2 A; 4QG3 A; 4LQ4 A; 1ZHO A; 4QGB A; 1CJS A; 3U4M A; 1DWU A; 2HW8 A; 2FHZ A; 3U56 A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
