The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
144
|
structure length |
142
|
Chain Sequence |
DYEDAVFYFVDDDKICSRDSIIDLIDEYITWRNHVIVFNKDITSCGRLYKELMKFDDVAIRYYGIDKINEIVEAMSDHYINFTKVHDQESLFATIGICAKITEHWGYKKISESRFQSLGNITDLMTDDNINILILFLEKKLN
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural basis for targeting of human RNA helicase DDX3 by poxvirus protein K7
pubmed doi rcsb |
| molecule keywords |
Protein K7
|
| molecule tags |
Viral protein/protein binding
|
| source organism |
Vaccinia virus wr
|
| total genus |
52
|
| structure length |
142
|
| sequence length |
144
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2009-09-09 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF06227 | Poxvirus | dsDNA Poxvirus |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Apoptosis Regulator Bcl-x | Apoptosis Regulator Bcl-x |
#chains in the Genus database with same CATH superfamily 2VVY A; 2VVX A; 4M0S A; 3JRV A; 4BBD A; 2I39 A; 4BBC A; 2K36 A; 2UXE A; 4LQK A; 4BBB A; 2VVW A; #chains in the Genus database with same CATH topology 1MK3 A; 5IF4 A; 1YSN A; 4K5B C; 4BD2 A; 2O2F A; 3IO9 A; 5JSB A; 2NL9 A; 2B48 A; 4B4S A; 5C3F A; 1YSI A; 2LR1 A; 2VOI A; 3MQP A; 5FC4 A; 2JBX A; 2K36 A; 2MEJ A; 4S0P A; 1R2G A; 4ZIE A; 1R2I A; 2O42 A; 2VOH A; 5FMI A; 1R2E A; 2VOG A; 4BD6 A; 4UF1 A; 1YSG A; 4D2L A; 4OQ6 A; 2VM6 A; 2ME8 A; 2W3L A; 1PQ1 A; 3KJ0 A; 1R2D A; 4M0S A; 4D2M A; 4U2V A; 3QBR A; 4U2U A; 3KZ0 A; 1AF3 A; 4YJ4 A; 4ZEQ A; 4HW3 A; 5KTG A; 5FDR A; 5FDO A; 3BL2 A; 5KU9 A; 4BBD A; 2V6Q A; 3D7V A; 2XA0 A; 2O22 A; 4BDU A; 4ZII A; 2MHS A; 2O21 A; 2XPX A; 1BXL A; 3DVU A; 2IMT A; 2PQK A; 4ZBI A; 4BPJ A; 1ZY3 A; 2NLA A; 2VVX A; 3IHE A; 2A5Y A; 2I39 A; 3IIG A; 2O2N A; 4S0O A; 4OQ5 A; 2VVW A; 4OYD A; 3IHD A; 3IHC A; 5IEZ A; 1DDB A; 2WH6 A; 1GJH A; 4YK9 A; 2ABO A; 1PQ0 A; 1O0L A; 3WIY A; 1Q59 A; 4WMR A; 4ZBF A; 2VTY A; 3PK1 A; 1R2H A; 2UXE A; 2KBW A; 2JM6 B; 2BZW A; 2JCN A; 2K7W A; 4BBC A; 3KJ1 A; 3I1H A; 2VOF A; 4UF3 A; 1LXL A; 1G5J A; 1TY4 A; 4BBB A; 1YSW A; 2BID A; 1WSX A; 2M5B A; 3WIX A; 2O2M A; 2YV6 A; 1MAZ A; 2VVY A; 3ILC A; 4ZIF A; 1F16 A; 4ZIG A; 4QNQ A; 4BD8 A; 4BD7 A; 2ROC A; 4BPI A; 3IIH A; 5C6H A; 4QVX A; 3MK8 A; 4ZIH A; 4HW2 A; 2ROD A; 4HW4 A; 3JRV A; 1K3K A; 1OHU A; 4MI8 A; 4UF2 A; 2KUA A; 1G5M A; 2JBY A; 4LQK A; 3KJ2 A; 4G35 A; 2IMS A; 3CVA X; #chains in the Genus database with same CATH homology 2VVY A; 4BBD A; 2VTY A; 2UXE A; 4BBC A; 2K36 A; 2JBX A; 2O42 A; 2VVX A; 3JRV A; 4UF3 A; 2I39 A; 4UF2 A; 4UF1 A; 4D2L A; 4LQK A; 2JBY A; 4BBB A; 2VVW A; 4M0S A; 4D2M A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
