3MQSC

Crystal structure of the usp7:hdm2(psts) complex
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
143
structure length
137
Chain Sequence
TSWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRFQKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYTIV3 (103-112)S6 (131-140)TI1 (63-66)S3 (90-92)S1 (68-75)S2 (85-86)3H1 (78-80)TI2 (122-125)TIV6 (120-123)TIV4 (104-113)TIV2 (91-94)S4 (95-104)S5 (114-121)TIV7 (127-130)TIV1 (75-78)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Crystal Structure of USP7
rcsb
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
total genus 24
structure length 137
sequence length 143
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2010-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 3mqsC00
3HSVA 4GWNA 3ZJBA 2F1WA 2F1XA 2CR2A 4YSIA 3IVQA 1CA4A 2F1ZA 4C9ZA 4O1VA 3HQMA 4CA1A 4KG9A 5H9MA 1LB5A 1D0AA 3HQLA 2FOJA 2GKWA 1D0JA 4GJHA 4JJQA 4I7BA 4I7CA 1ZMSA 1L0AA 3HU6A 4K8UA 1K2FA 4X3GA 2XXNA 4M4EA 1CZYA 1LB6A 1F3VB 1FLLA 1YY6A 1FLKA 2AN6A 3HQIA 1D00A 1CZZA 2F1YA 1D01A 2FOPA 3MQSC 4GHUA 1KZZA 3HQHA 3MQRA 2FOOA 4Z8MA 1QSCA 4GWMA 1RF3A 4I7DA 3IVVA 1LB4A 1YZEA 2A25A 5E1TA 1CA9A 3IVBA
chains in the Genus database with same CATH superfamily
3HSVA 4GWNA 3ZJBA 2F1WA 2F1XA 2CR2A 4YSIA 3IVQA 1CA4A 2F1ZA 4C9ZA 4O1VA 3HQMA 4CA1A 4KG9A 5H9MA 1LB5A 1D0AA 3HQLA 2FOJA 2GKWA 1D0JA 4GJHA 4JJQA 4I7BA 4I7CA 1ZMSA 1L0AA 3HU6A 4K8UA 1K2FA 4X3GA 2XXNA 4M4EA 1CZYA 1LB6A 1F3VB 1FLLA 1YY6A 1FLKA 2AN6A 3HQIA 1D00A 1CZZA 2F1YA 1D01A 2FOPA 3MQSC 4GHUA 1KZZA 3HQHA 3MQRA 2FOOA 4Z8MA 1QSCA 4GWMA 1RF3A 4I7DA 3IVVA 1LB4A 1YZEA 2A25A 5E1TA 1CA9A 3IVBA
chains in the Genus database with same CATH topology
3HSVA 4GWNA 3ZJBA 2F1WA 2F1XA 2CR2A 4YSIA 3IVQA 1CA4A 2F1ZA 4C9ZA 4O1VA 3HQMA 4CA1A 4KG9A 5H9MA 1LB5A 1D0AA 3HQLA 2FOJA 2GKWA 1D0JA 4GJHA 4JJQA 4I7BA 4I7CA 1ZMSA 1L0AA 3HU6A 4K8UA 1K2FA 4X3GA 2XXNA 4M4EA 1CZYA 1LB6A 1F3VB 1FLLA 1YY6A 1FLKA 2AN6A 3HQIA 1D00A 1CZZA 2F1YA 1D01A 2FOPA 3MQSC 4GHUA 1KZZA 3HQHA 3MQRA 2FOOA 4Z8MA 1QSCA 4GWMA 1RF3A 4I7DA 3IVVA 1LB4A 1YZEA 2A25A 5E1TA 1CA9A 3IVBA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3HSV A;  4GWN A;  3ZJB A;  2F1W A;  2F1X A;  2CR2 A;  4YSI A;  3IVQ A;  1CA4 A;  2F1Z A;  4C9Z A;  4O1V A;  3HQM A;  4CA1 A;  4KG9 A;  5H9M A;  1LB5 A;  1D0A A;  3HQL A;  2FOJ A;  2GKW A;  1D0J A;  4GJH A;  4JJQ A;  4I7B A;  4I7C A;  1ZMS A;  1L0A A;  3HU6 A;  4K8U A;  1K2F A;  4X3G A;  2XXN A;  4M4E A;  1CZY A;  1LB6 A;  1F3V B;  1FLL A;  1YY6 A;  1FLK A;  2AN6 A;  3HQI A;  1D00 A;  1CZZ A;  2F1Y A;  1D01 A;  2FOP A;  3MQS C;  4GHU A;  1KZZ A;  3HQH A;  3MQR A;  2FOO A;  4Z8M A;  1QSC A;  4GWM A;  1RF3 A;  4I7D A;  3IVV A;  1LB4 A;  1YZE A;  2A25 A;  5E1T A;  1CA9 A;  3IVB A; 
#chains in the Genus database with same CATH topology
 3HSV A;  4GWN A;  3ZJB A;  2F1W A;  2F1X A;  2CR2 A;  4YSI A;  3IVQ A;  1CA4 A;  2F1Z A;  4C9Z A;  4O1V A;  3HQM A;  4CA1 A;  4KG9 A;  5H9M A;  1LB5 A;  1D0A A;  3HQL A;  2FOJ A;  2GKW A;  1D0J A;  4GJH A;  4JJQ A;  4I7B A;  4I7C A;  1ZMS A;  1L0A A;  3HU6 A;  4K8U A;  1K2F A;  4X3G A;  2XXN A;  4M4E A;  1CZY A;  1LB6 A;  1F3V B;  1FLL A;  1YY6 A;  1FLK A;  2AN6 A;  3HQI A;  1D00 A;  1CZZ A;  2F1Y A;  1D01 A;  2FOP A;  3MQS C;  4GHU A;  1KZZ A;  3HQH A;  3MQR A;  2FOO A;  4Z8M A;  1QSC A;  4GWM A;  1RF3 A;  4I7D A;  3IVV A;  1LB4 A;  1YZE A;  2A25 A;  5E1T A;  1CA9 A;  3IVB A; 
#chains in the Genus database with same CATH homology
 3HSV A;  4GWN A;  3ZJB A;  2F1W A;  2F1X A;  2CR2 A;  4YSI A;  3IVQ A;  1CA4 A;  2F1Z A;  4C9Z A;  4O1V A;  3HQM A;  4CA1 A;  4KG9 A;  5H9M A;  1LB5 A;  1D0A A;  3HQL A;  2FOJ A;  2GKW A;  1D0J A;  4GJH A;  4JJQ A;  4I7B A;  4I7C A;  1ZMS A;  1L0A A;  3HU6 A;  4K8U A;  1K2F A;  4X3G A;  2XXN A;  4M4E A;  1CZY A;  1LB6 A;  1F3V B;  1FLL A;  1YY6 A;  1FLK A;  2AN6 A;  3HQI A;  1D00 A;  1CZZ A;  2F1Y A;  1D01 A;  2FOP A;  3MQS C;  4GHU A;  1KZZ A;  3HQH A;  3MQR A;  2FOO A;  4Z8M A;  1QSC A;  4GWM A;  1RF3 A;  4I7D A;  3IVV A;  1LB4 A;  1YZE A;  2A25 A;  5E1T A;  1CA9 A;  3IVB A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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