3PF0A

Crystal structure of an imelysin-like protein (psyc_1802) from psychrobacter arcticum 273-4 at 2.15 a resolution
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
318
structure length
318
Chain Sequence
IVAVDISAETEKTYLTHVANDMVIPAYADAAKQSDLLHDLAQKHCQKAPVSGDELQALRDQWLVLAQAWASAEMVNFGPATASMSNLYINYYPDERGLVHGGVADLITANPALTAEQLANESAVVQGIPGLEEALYANDSLDAGQCAYVMSASSALGTRLKDIEKNWQQNAIKLLAIDKTAESDQGLNQWFNSLLSLVETMKSNAIEQPLGLSGKAKGHLPAATAGQSRAIINAKLATLNKAMTDPVLTAILGSNNENTVADTLSTALADTTALLAQMPEDLATADKATQQELYDHLTNITRLIKSQLIPTLGIRVGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an Imelysin-like protein (Psyc_1802) from PSYCHROBACTER ARCTICUM 273-4 at 2.15 A resolution
rcsb
molecule tags Unknown function
source organism Psychrobacter arcticus
molecule keywords Imelysin-like protein
total genus 113
structure length 318
sequence length 318
ec nomenclature
pdb deposition date 2010-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3pf0A00
3WSCA 4ECGA 4BGOA 3PF0A 3AT7A
chains in the Genus database with same CATH superfamily
5HXSA 1SJ8A 4ECGA 2KGXA 3WURA 2MTCA 5JDNA 5HXCA 3V5SA 5JDGA 5JDQA 3AT7A 3PHF1 5JDFA 4W8PA 3VJZA 1SJ7A 5JDMA 4BGOA 2X0CA 5HXEA 5JDHA 3V5UA 3WSCA 3DYJA 3AY5A 5HWYA 2XQYA 5JDLA 5HWXA 4ONRA 3M1CA 3PF0A 5T1DA 5HXHA 2LQUA 5FZTA 2KBBA 5HYAA 3FYQA 2L7NA 5HXRA 2L10A 4F7GB 2KVPA
chains in the Genus database with same CATH topology
5HXSA 4ECGA 3WURA 2MTCA 5JDNA 5HXCA 3V5SA 5JDGA 5JDQA 3AT7A 3PHF1 5JDFA 3VJZA 5JDMA 4BGOA 5HXEA 5JDHA 3V5UA 3WSCA 5JDLA 5HWYA 2XQYA 5HWXA 4ONRA 3M1CA 3PF0A 5T1DA 5HXHA 2LQUA 5HYAA 5HXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3WSC A;  4ECG A;  4BGO A;  3PF0 A;  3AT7 A; 
#chains in the Genus database with same CATH topology
 5HXS A;  1SJ8 A;  4ECG A;  2KGX A;  3WUR A;  2MTC A;  5JDN A;  5HXC A;  3V5S A;  5JDG A;  5JDQ A;  3AT7 A;  3PHF 1;  5JDF A;  4W8P A;  3VJZ A;  1SJ7 A;  5JDM A;  4BGO A;  2X0C A;  5HXE A;  5JDH A;  3V5U A;  3WSC A;  3DYJ A;  3AY5 A;  5HWY A;  2XQY A;  5JDL A;  5HWX A;  4ONR A;  3M1C A;  3PF0 A;  5T1D A;  5HXH A;  2LQU A;  5FZT A;  2KBB A;  5HYA A;  3FYQ A;  2L7N A;  5HXR A;  2L10 A;  4F7G B;  2KVP A; 
#chains in the Genus database with same CATH homology
 5HXS A;  4ECG A;  3WUR A;  2MTC A;  5JDN A;  5HXC A;  3V5S A;  5JDG A;  5JDQ A;  3AT7 A;  3PHF 1;  5JDF A;  3VJZ A;  5JDM A;  4BGO A;  5HXE A;  5JDH A;  3V5U A;  3WSC A;  5JDL A;  5HWY A;  2XQY A;  5HWX A;  4ONR A;  3M1C A;  3PF0 A;  5T1D A;  5HXH A;  2LQU A;  5HYA A;  5HXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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