3PF0A

Crystal structure of an imelysin-like protein (psyc_1802) from psychrobacter arcticum 273-4 at 2.15 a resolution
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
318
structure length
318
Chain Sequence
IVAVDISAETEKTYLTHVANDMVIPAYADAAKQSDLLHDLAQKHCQKAPVSGDELQALRDQWLVLAQAWASAEMVNFGPATASMSNLYINYYPDERGLVHGGVADLITANPALTAEQLANESAVVQGIPGLEEALYANDSLDAGQCAYVMSASSALGTRLKDIEKNWQQNAIKLLAIDKTAESDQGLNQWFNSLLSLVETMKSNAIEQPLGLSGKAKGHLPAATAGQSRAIINAKLATLNKAMTDPVLTAILGSNNENTVADTLSTALADTTALLAQMPEDLATADKATQQELYDHLTNITRLIKSQLIPTLGIRVGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of an Imelysin-like protein (Psyc_1802) from PSYCHROBACTER ARCTICUM 273-4 at 2.15 A resolution
rcsb
molecule tags Unknown function
source organism Psychrobacter arcticus
molecule keywords Imelysin-like protein
total genus 113
structure length 318
sequence length 318
ec nomenclature
pdb deposition date 2010-10-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3pf0A00
4ECGA 3AT7A 3WSCA 3PF0A 4BGOA
chains in the Genus database with same CATH superfamily
1SJ7A 3FYQA 4ECGA 2LQUA 5JDNA 3WURA 1SJ8A 4W8PA 3AT7A 3WSCA 3VJZA 5JDFA 3PF0A 5FZTA 2KVPA 2L10A 4BGOA 4F7GB 5HXEA 2XQYA 2MTCA 5JDMA 3PHF1 5HXCA 5JDLA 5HXHA 5JDGA 5HWYA 3V5UA 5JDHA 3M1CA 3AY5A 2X0CA 5T1DA 5JDQA 2L7NA 3DYJA 3V5SA 2KGXA 5HWXA 4ONRA 5HXSA 2KBBA 5HYAA 5HXRA
chains in the Genus database with same CATH topology
4ECGA 2LQUA 5JDNA 3WURA 3AT7A 3WSCA 3VJZA 5JDFA 3PF0A 4BGOA 5HXEA 2XQYA 2MTCA 5JDMA 3PHF1 5HXCA 5JDLA 5HXHA 5JDGA 5HWYA 3V5UA 5JDHA 3M1CA 5T1DA 5JDQA 3V5SA 5HWXA 4ONRA 5HXSA 5HYAA 5HXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ECG A;  3AT7 A;  3WSC A;  3PF0 A;  4BGO A; 
#chains in the Genus database with same CATH topology
 1SJ7 A;  3FYQ A;  4ECG A;  2LQU A;  5JDN A;  3WUR A;  1SJ8 A;  4W8P A;  3AT7 A;  3WSC A;  3VJZ A;  5JDF A;  3PF0 A;  5FZT A;  2KVP A;  2L10 A;  4BGO A;  4F7G B;  5HXE A;  2XQY A;  2MTC A;  5JDM A;  3PHF 1;  5HXC A;  5JDL A;  5HXH A;  5JDG A;  5HWY A;  3V5U A;  5JDH A;  3M1C A;  3AY5 A;  2X0C A;  5T1D A;  5JDQ A;  2L7N A;  3DYJ A;  3V5S A;  2KGX A;  5HWX A;  4ONR A;  5HXS A;  2KBB A;  5HYA A;  5HXR A; 
#chains in the Genus database with same CATH homology
 4ECG A;  2LQU A;  5JDN A;  3WUR A;  3AT7 A;  3WSC A;  3VJZ A;  5JDF A;  3PF0 A;  4BGO A;  5HXE A;  2XQY A;  2MTC A;  5JDM A;  3PHF 1;  5HXC A;  5JDL A;  5HXH A;  5JDG A;  5HWY A;  3V5U A;  5JDH A;  3M1C A;  5T1D A;  5JDQ A;  3V5S A;  5HWX A;  4ONR A;  5HXS A;  5HYA A;  5HXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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