3PHF1

Crystal structure of the epstein-barr virus gh and gl complex
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
653
structure length
653
Chain Sequence
LSEVKLHLDIEGHASHYTIPWTELMAKVPGLSPEALWREANVTEDLASMLNRYKLIYKTSGTLGIALAEPVDIPAVSEGSMQVDASKVHPGVISGLNSPACMLSAPLEKQLFYYIGTMLPNTRPHSYVFYQLRCHLSYVALSINGDKFQYTGAMTSKFLMGTYKRVTEKGDEHVLSLVFGKTKDLPDLRGPFSYPSLTSAQSGDYSLVIVTTFVHYANFHNYFVPNLKDMFSRAVTMTAASYARYVLQKLVLLEMKGGCREPELDTETLTTMFEVSVAFFKVGHAVGETGNGCVDLRWLAKSFFELTVLKDIIGICYGATVKGMQSYGLERLAAMLMATVKMEELGHLTTEKQEYALRLATVGYPKAGVYSGLIGGATSVLLSAYNRHPLFQPLHTVMRETLFIGSHVVLRELRLNVTTQGPNLALYQLLSTALCSALEIGEVLRGLALGTESGLFSPCYLSLRFDLTRDKLLSMAPQEATLDQAAVSNAVDGFLGRLSLEREDRDAWHLPAYKCVDRLDKVLMIIPLINVTFIISSDREVRGSALYEASTTYLSSSLFLSPVIMNKCSQGAVAGEPRQIPKIQNFTRTQKSCIFCGFALLSYDEKEGLETTTYITSQEVQNSILSSNYFDFDNLHVHYLLLTTNGTVMEIAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the Epstein-Barr virus (EBV) glycoprotein H/glycoprotein L (gH/gL) complex.
pubmed doi rcsb
molecule tags Viral protein
source organism Human herpesvirus 4
molecule keywords Envelope glycoprotein H
total genus 173
structure length 653
sequence length 653
chains with identical sequence 3, 5, A, C, E, G, I, K, M, O, Q, S, U, W, Y
ec nomenclature
pdb deposition date 2010-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF02489 Herpes_glycop_H Herpesvirus glycoprotein H main domain
1 PF17488 Herpes_glycoH_C Herpesvirus glycoprotein H C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.70 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3phf101
5T1DA 3PHF1
chains in the Genus database with same CATH superfamily
2MTCA 5JDLA 5HXHA 5T1DA 2L7NA 5JDGA 2L10A 3WSCA 5JDMA 5HWXA 3PHF1 2LQUA 3WURA 2KGXA 5JDHA 1SJ7A 3V5UA 5HYAA 5JDQA 2X0CA 3FYQA 2KVPA 3PF0A 4W8PA 3V5SA 5HXSA 2KBBA 3AT7A 2XQYA 3AY5A 3DYJA 5JDFA 4F7GB 5HXRA 5JDNA 3VJZA 4BGOA 5HXEA 3M1CA 4ONRA 5HWYA 5FZTA 1SJ8A 5HXCA 4ECGA
chains in the Genus database with same CATH topology
2MTCA 5JDLA 5HXHA 5T1DA 5JDGA 3WSCA 5JDMA 5HWXA 3PHF1 2LQUA 3WURA 5JDHA 3V5UA 5HYAA 5JDQA 3PF0A 3V5SA 5HXSA 3AT7A 2XQYA 5JDFA 5HXRA 5JDNA 3VJZA 4BGOA 5HXEA 3M1CA 4ONRA 5HWYA 5HXCA 4ECGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5T1D A;  3PHF 1; 
#chains in the Genus database with same CATH topology
 2MTC A;  5JDL A;  5HXH A;  5T1D A;  2L7N A;  5JDG A;  2L10 A;  3WSC A;  5JDM A;  5HWX A;  3PHF 1;  2LQU A;  3WUR A;  2KGX A;  5JDH A;  1SJ7 A;  3V5U A;  5HYA A;  5JDQ A;  2X0C A;  3FYQ A;  2KVP A;  3PF0 A;  4W8P A;  3V5S A;  5HXS A;  2KBB A;  3AT7 A;  2XQY A;  3AY5 A;  3DYJ A;  5JDF A;  4F7G B;  5HXR A;  5JDN A;  3VJZ A;  4BGO A;  5HXE A;  3M1C A;  4ONR A;  5HWY A;  5FZT A;  1SJ8 A;  5HXC A;  4ECG A; 
#chains in the Genus database with same CATH homology
 2MTC A;  5JDL A;  5HXH A;  5T1D A;  5JDG A;  3WSC A;  5JDM A;  5HWX A;  3PHF 1;  2LQU A;  3WUR A;  5JDH A;  3V5U A;  5HYA A;  5JDQ A;  3PF0 A;  3V5S A;  5HXS A;  3AT7 A;  2XQY A;  5JDF A;  5HXR A;  5JDN A;  3VJZ A;  4BGO A;  5HXE A;  3M1C A;  4ONR A;  5HWY A;  5HXC A;  4ECG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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