3PHF1

Crystal structure of the epstein-barr virus gh and gl complex
Total Genus 173
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
173
sequence length
653
structure length
653
Chain Sequence
LSEVKLHLDIEGHASHYTIPWTELMAKVPGLSPEALWREANVTEDLASMLNRYKLIYKTSGTLGIALAEPVDIPAVSEGSMQVDASKVHPGVISGLNSPACMLSAPLEKQLFYYIGTMLPNTRPHSYVFYQLRCHLSYVALSINGDKFQYTGAMTSKFLMGTYKRVTEKGDEHVLSLVFGKTKDLPDLRGPFSYPSLTSAQSGDYSLVIVTTFVHYANFHNYFVPNLKDMFSRAVTMTAASYARYVLQKLVLLEMKGGCREPELDTETLTTMFEVSVAFFKVGHAVGETGNGCVDLRWLAKSFFELTVLKDIIGICYGATVKGMQSYGLERLAAMLMATVKMEELGHLTTEKQEYALRLATVGYPKAGVYSGLIGGATSVLLSAYNRHPLFQPLHTVMRETLFIGSHVVLRELRLNVTTQGPNLALYQLLSTALCSALEIGEVLRGLALGTESGLFSPCYLSLRFDLTRDKLLSMAPQEATLDQAAVSNAVDGFLGRLSLEREDRDAWHLPAYKCVDRLDKVLMIIPLINVTFIISSDREVRGSALYEASTTYLSSSLFLSPVIMNKCSQGAVAGEPRQIPKIQNFTRTQKSCIFCGFALLSYDEKEGLETTTYITSQEVQNSILSSNYFDFDNLHVHYLLLTTNGTVMEIAG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the Epstein-Barr virus (EBV) glycoprotein H/glycoprotein L (gH/gL) complex.
pubmed doi rcsb
molecule tags Viral protein
source organism Human herpesvirus 4
molecule keywords Envelope glycoprotein H
total genus 173
structure length 653
sequence length 653
chains with identical sequence 3, 5, A, C, E, G, I, K, M, O, Q, S, U, W, Y
ec nomenclature
pdb deposition date 2010-11-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
1 PF02489 Herpes_glycop_H Herpesvirus glycoprotein H main domain
1 PF17488 Herpes_glycoH_C Herpesvirus glycoprotein H C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.70 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 3phf101
5T1DA 3PHF1
chains in the Genus database with same CATH superfamily
3PF0A 2L10A 2L7NA 3WSCA 5JDGA 5T1DA 5HXEA 3M1CA 5HWXA 3AY5A 4ONRA 5HXRA 5JDLA 3VJZA 5JDFA 3AT7A 5HWYA 5JDHA 5HXHA 1SJ7A 4BGOA 2KVPA 3V5UA 1SJ8A 5FZTA 3FYQA 3WURA 3V5SA 5HXSA 3DYJA 5JDQA 5JDNA 5HXCA 5JDMA 2KGXA 5HYAA 3PHF1 2XQYA 2LQUA 2MTCA 2X0CA 4W8PA 2KBBA 4F7GB 4ECGA
chains in the Genus database with same CATH topology
3PF0A 3WSCA 5JDGA 5T1DA 5HXEA 3M1CA 5HWXA 5HXRA 4ONRA 5JDLA 3VJZA 5JDFA 5HWYA 3AT7A 5JDHA 5HXHA 4BGOA 3V5UA 3WURA 3V5SA 5HXSA 5JDQA 5JDNA 5HXCA 5JDMA 5HYAA 3PHF1 2XQYA 2LQUA 2MTCA 4ECGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5T1D A;  3PHF 1; 
#chains in the Genus database with same CATH topology
 3PF0 A;  2L10 A;  2L7N A;  3WSC A;  5JDG A;  5T1D A;  5HXE A;  3M1C A;  5HWX A;  3AY5 A;  4ONR A;  5HXR A;  5JDL A;  3VJZ A;  5JDF A;  3AT7 A;  5HWY A;  5JDH A;  5HXH A;  1SJ7 A;  4BGO A;  2KVP A;  3V5U A;  1SJ8 A;  5FZT A;  3FYQ A;  3WUR A;  3V5S A;  5HXS A;  3DYJ A;  5JDQ A;  5JDN A;  5HXC A;  5JDM A;  2KGX A;  5HYA A;  3PHF 1;  2XQY A;  2LQU A;  2MTC A;  2X0C A;  4W8P A;  2KBB A;  4F7G B;  4ECG A; 
#chains in the Genus database with same CATH homology
 3PF0 A;  3WSC A;  5JDG A;  5T1D A;  5HXE A;  3M1C A;  5HWX A;  5HXR A;  4ONR A;  5JDL A;  3VJZ A;  5JDF A;  5HWY A;  3AT7 A;  5JDH A;  5HXH A;  4BGO A;  3V5U A;  3WUR A;  3V5S A;  5HXS A;  5JDQ A;  5JDN A;  5HXC A;  5JDM A;  5HYA A;  3PHF 1;  2XQY A;  2LQU A;  2MTC A;  4ECG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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