4AWHA

Influenza strain ph1n1 2009 polymerase subunit pa endonuclease in complex with rump
Total Genus 71
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
71
sequence length
199
structure length
199
Chain Sequence
MAMEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Analysis of Specific Metal Chelating Inhibitor Binding to the Endonuclease Domain of Influenza Ph1N1 (2009) Polymerase.
pubmed doi rcsb
molecule tags Hydrolase
source organism Influenza virus
molecule keywords POLYMERASE PA
total genus 71
structure length 199
sequence length 199
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-06-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.90 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 4awhA00
4AWFA 4E5FA 5JHTA 4NFZA 5DEBA 4E5EA 4AWHA 4E5GA 4CGSA 4CGXA 4E5JA 4ZHZA 3HW3A 4ZI0A 5EGAA 4AWMA 5D2OA 3HW4A 5JHVA 4E5LA 4E5HA 4CHCA 5FDDA 5I13A 3HW5A 4AVGA 4YYLA 4AVLA 4AWKA 3HW6A 4ZQQA 5CL0A 4AVQA 5CGVA 4E5IA 5D42A 3EBJA 5CCYA 5D8UA 5D4GA 5DBSA 5FDGA 5DESA 5CZNA 4AWGA 5D9JA
chains in the Genus database with same CATH superfamily
4AWFA 2FQZA 1ES8A 2XI5A 5I13A 2BAMA 3BM3A 4R28A 4AWKA 3HW6A 1ESGA 5D8UA 5D4GA 5DBSA 5FDGA 2GB7A 2P0JA 5JHTA 3WVGA 4AWHA 4CGXA 3BAMA 4ZI0A 3DW9A 4F0PA 4E5LA 4E5HA 5JHVA 4CHCA 3V1ZA 3HW5A 4AVGA 2P14A 4YYLA 1KNVA 4ZQQA 1DC1A 3WVHA 5CL0A 4AVQA 5CGVA 5DESA 1M0DA 1VRRA 1CFRA 2FOKA 3WVKA 3V20A 3WVPA 3DVOA 4NFZA 3V21A 1SDOA 4E5JA 3MQYA 5EGAA 4AWMA 3CAEA 3DPGA 5FDDA 1D2IA 3ODHA 1M0IA 2EWFA 4E5IA 5D42A 5CZNA 4AWGA 5D9JA 1BHMA 4E5FA 5DEBA 4E5EA 4E5GA 4CGSA 3MQ6A 4ZHZA 3HW3A 5D2OA 1BAMA 3HW4A 3N78A 4OC8A 3A4KA 3N7BA 4AVLA 3WVIA 2XI7A 1FZRA 1FOKA 2E52A 3EBJA 5CCYA 1DFMA 2PFJA 4F0QA
chains in the Genus database with same CATH topology
4AWFA 2FQZA 1ES8A 2XI5A 5I13A 2BAMA 3BM3A 4R28A 4AWKA 3HW6A 1ESGA 5D8UA 5D4GA 5DBSA 5FDGA 2GB7A 2P0JA 5JHTA 3WVGA 4AWHA 4CGXA 3BAMA 4ZI0A 3DW9A 4F0PA 4E5LA 4E5HA 5JHVA 4CHCA 3V1ZA 3HW5A 4AVGA 2P14A 4YYLA 1KNVA 4ZQQA 1DC1A 3WVHA 5CL0A 4AVQA 5CGVA 5DESA 1M0DA 1VRRA 1CFRA 2FOKA 3WVKA 3V20A 3WVPA 3DVOA 4NFZA 3V21A 1SDOA 4E5JA 3MQYA 5EGAA 4AWMA 3CAEA 3DPGA 5FDDA 1D2IA 3ODHA 1M0IA 2EWFA 4E5IA 5D42A 5CZNA 4AWGA 5D9JA 1BHMA 4E5FA 5DEBA 4E5EA 4E5GA 4CGSA 3MQ6A 4ZHZA 3HW3A 5D2OA 1BAMA 3HW4A 3N78A 4OC8A 3A4KA 3N7BA 4AVLA 3WVIA 2XI7A 1FZRA 1FOKA 2E52A 3EBJA 5CCYA 1DFMA 2PFJA 4F0QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AWF A;  4E5F A;  5JHT A;  4NFZ A;  5DEB A;  4E5E A;  4AWH A;  4E5G A;  4CGS A;  4CGX A;  4E5J A;  4ZHZ A;  3HW3 A;  4ZI0 A;  5EGA A;  4AWM A;  5D2O A;  3HW4 A;  5JHV A;  4E5L A;  4E5H A;  4CHC A;  5FDD A;  5I13 A;  3HW5 A;  4AVG A;  4YYL A;  4AVL A;  4AWK A;  3HW6 A;  4ZQQ A;  5CL0 A;  4AVQ A;  5CGV A;  4E5I A;  5D42 A;  3EBJ A;  5CCY A;  5D8U A;  5D4G A;  5DBS A;  5FDG A;  5DES A;  5CZN A;  4AWG A;  5D9J A; 
#chains in the Genus database with same CATH topology
 4AWF A;  2FQZ A;  1ES8 A;  2XI5 A;  5I13 A;  2BAM A;  3BM3 A;  4R28 A;  4AWK A;  3HW6 A;  1ESG A;  5D8U A;  5D4G A;  5DBS A;  5FDG A;  2GB7 A;  2P0J A;  5JHT A;  3WVG A;  4AWH A;  4CGX A;  3BAM A;  4ZI0 A;  3DW9 A;  4F0P A;  4E5L A;  4E5H A;  5JHV A;  4CHC A;  3V1Z A;  3HW5 A;  4AVG A;  2P14 A;  4YYL A;  1KNV A;  4ZQQ A;  1DC1 A;  3WVH A;  5CL0 A;  4AVQ A;  5CGV A;  5DES A;  1M0D A;  1VRR A;  1CFR A;  2FOK A;  3WVK A;  3V20 A;  3WVP A;  3DVO A;  4NFZ A;  3V21 A;  1SDO A;  4E5J A;  3MQY A;  5EGA A;  4AWM A;  3CAE A;  3DPG A;  5FDD A;  1D2I A;  3ODH A;  1M0I A;  2EWF A;  4E5I A;  5D42 A;  5CZN A;  4AWG A;  5D9J A;  1BHM A;  4E5F A;  5DEB A;  4E5E A;  4E5G A;  4CGS A;  3MQ6 A;  4ZHZ A;  3HW3 A;  5D2O A;  1BAM A;  3HW4 A;  3N78 A;  4OC8 A;  3A4K A;  3N7B A;  4AVL A;  3WVI A;  2XI7 A;  1FZR A;  1FOK A;  2E52 A;  3EBJ A;  5CCY A;  1DFM A;  2PFJ A;  4F0Q A; 
#chains in the Genus database with same CATH homology
 4AWF A;  2FQZ A;  1ES8 A;  2XI5 A;  5I13 A;  2BAM A;  3BM3 A;  4R28 A;  4AWK A;  3HW6 A;  1ESG A;  5D8U A;  5D4G A;  5DBS A;  5FDG A;  2GB7 A;  2P0J A;  5JHT A;  3WVG A;  4AWH A;  4CGX A;  3BAM A;  4ZI0 A;  3DW9 A;  4F0P A;  4E5L A;  4E5H A;  5JHV A;  4CHC A;  3V1Z A;  3HW5 A;  4AVG A;  2P14 A;  4YYL A;  1KNV A;  4ZQQ A;  1DC1 A;  3WVH A;  5CL0 A;  4AVQ A;  5CGV A;  5DES A;  1M0D A;  1VRR A;  1CFR A;  2FOK A;  3WVK A;  3V20 A;  3WVP A;  3DVO A;  4NFZ A;  3V21 A;  1SDO A;  4E5J A;  3MQY A;  5EGA A;  4AWM A;  3CAE A;  3DPG A;  5FDD A;  1D2I A;  3ODH A;  1M0I A;  2EWF A;  4E5I A;  5D42 A;  5CZN A;  4AWG A;  5D9J A;  1BHM A;  4E5F A;  5DEB A;  4E5E A;  4E5G A;  4CGS A;  3MQ6 A;  4ZHZ A;  3HW3 A;  5D2O A;  1BAM A;  3HW4 A;  3N78 A;  4OC8 A;  3A4K A;  3N7B A;  4AVL A;  3WVI A;  2XI7 A;  1FZR A;  1FOK A;  2E52 A;  3EBJ A;  5CCY A;  1DFM A;  2PFJ A;  4F0Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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