4BGOA

Structural and functional role of the imelysin-like protein efem from pseudomonas syringae pv. syringae and implications in bacterial iron transport
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
251
structure length
251
Chain Sequence
ATAPLDLVGPVSDYKIYVTENIEELVSHTQKFTDAVKKGDIATAKKLYAPTRVYYESVEPIAELFSDLDASIDSRVDDHEQGVAAEDFTGFHRLEYALFSQNTTKDQGPIADKLLSDVKDLEKRVADLTFPPEKVVGGAAALLEEVAATKISGEEDRYSHTDLYDFQGNIDGAKKIVDLFRPQIEQQDKAFSSKVDKNFATVDKILAKYKTKDGGFETYDKVKENDRKALVGPVNTLAEDLSTLRGKLGLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Role of the Imelysin- Like Protein Efem from Pseudomonas Syringae Pv. Syringae and Implications in Bacterial Iron Transport
rcsb
molecule tags Hydrolase
source organism Pseudomonas syringae pv. syringae
molecule keywords EFEM M75 PEPTIDASE
total genus 99
structure length 251
sequence length 251
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 4bgoA00
4ECGA 3WSCA 3AT7A 3PF0A 4BGOA
chains in the Genus database with same CATH superfamily
2X0CA 5JDNA 2XQYA 5JDGA 2KBBA 2KVPA 4BGOA 1SJ8A 4ECGA 5JDLA 3DYJA 5HXRA 5T1DA 3WSCA 4W8PA 3PHF1 4ONRA 5FZTA 5HXCA 5HXEA 3VJZA 5HXSA 5HYAA 3V5UA 5JDFA 3AT7A 3WURA 2MTCA 2KGXA 4F7GB 2L10A 3AY5A 3FYQA 2L7NA 5HWYA 5HWXA 3PF0A 3V5SA 5HXHA 3M1CA 5JDHA 1SJ7A 5JDQA 5JDMA 2LQUA
chains in the Genus database with same CATH topology
5JDNA 2XQYA 5JDGA 4BGOA 4ECGA 5JDLA 5HXRA 5T1DA 3WSCA 3PHF1 4ONRA 5HXCA 5HXEA 3VJZA 5HXSA 5HYAA 3V5UA 5JDFA 3AT7A 3WURA 2MTCA 5HWYA 5HWXA 3PF0A 3V5SA 5HXHA 3M1CA 5JDHA 5JDQA 5JDMA 2LQUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ECG A;  3WSC A;  3AT7 A;  3PF0 A;  4BGO A; 
#chains in the Genus database with same CATH topology
 2X0C A;  5JDN A;  2XQY A;  5JDG A;  2KBB A;  2KVP A;  4BGO A;  1SJ8 A;  4ECG A;  5JDL A;  3DYJ A;  5HXR A;  5T1D A;  3WSC A;  4W8P A;  3PHF 1;  4ONR A;  5FZT A;  5HXC A;  5HXE A;  3VJZ A;  5HXS A;  5HYA A;  3V5U A;  5JDF A;  3AT7 A;  3WUR A;  2MTC A;  2KGX A;  4F7G B;  2L10 A;  3AY5 A;  3FYQ A;  2L7N A;  5HWY A;  5HWX A;  3PF0 A;  3V5S A;  5HXH A;  3M1C A;  5JDH A;  1SJ7 A;  5JDQ A;  5JDM A;  2LQU A; 
#chains in the Genus database with same CATH homology
 5JDN A;  2XQY A;  5JDG A;  4BGO A;  4ECG A;  5JDL A;  5HXR A;  5T1D A;  3WSC A;  3PHF 1;  4ONR A;  5HXC A;  5HXE A;  3VJZ A;  5HXS A;  5HYA A;  3V5U A;  5JDF A;  3AT7 A;  3WUR A;  2MTC A;  5HWY A;  5HWX A;  3PF0 A;  3V5S A;  5HXH A;  3M1C A;  5JDH A;  5JDQ A;  5JDM A;  2LQU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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