4BGOA

Structural and functional role of the imelysin-like protein efem from pseudomonas syringae pv. syringae and implications in bacterial iron transport
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
251
structure length
251
Chain Sequence
ATAPLDLVGPVSDYKIYVTENIEELVSHTQKFTDAVKKGDIATAKKLYAPTRVYYESVEPIAELFSDLDASIDSRVDDHEQGVAAEDFTGFHRLEYALFSQNTTKDQGPIADKLLSDVKDLEKRVADLTFPPEKVVGGAAALLEEVAATKISGEEDRYSHTDLYDFQGNIDGAKKIVDLFRPQIEQQDKAFSSKVDKNFATVDKILAKYKTKDGGFETYDKVKENDRKALVGPVNTLAEDLSTLRGKLGLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural and Functional Role of the Imelysin- Like Protein Efem from Pseudomonas Syringae Pv. Syringae and Implications in Bacterial Iron Transport
rcsb
molecule tags Hydrolase
source organism Pseudomonas syringae pv. syringae
molecule keywords EFEM M75 PEPTIDASE
total genus 99
structure length 251
sequence length 251
chains with identical sequence B
ec nomenclature
pdb deposition date 2013-03-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09375 Peptidase_M75 Imelysin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1420.20 Mainly Alpha Up-down Bundle A middle domain of Talin 1 A middle domain of Talin 1 4bgoA00
4ECGA 3PF0A 4BGOA 3AT7A 3WSCA
chains in the Genus database with same CATH superfamily
2X0CA 3WURA 2KVPA 4ECGA 2LQUA 2MTCA 2XQYA 5JDFA 4BGOA 5JDNA 5HXRA 5HWXA 4W8PA 5T1DA 4F7GB 5HYAA 3PHF1 3PF0A 3V5UA 5HXHA 3FYQA 3WSCA 5JDMA 5JDGA 3AT7A 3VJZA 3V5SA 2KGXA 3DYJA 5HXSA 5JDQA 2L7NA 1SJ8A 5HWYA 5JDLA 5HXCA 3AY5A 1SJ7A 2L10A 2KBBA 5HXEA 5JDHA 4ONRA 5FZTA 3M1CA
chains in the Genus database with same CATH topology
3WURA 4ECGA 2LQUA 2MTCA 2XQYA 5JDFA 4BGOA 5JDNA 5HXRA 5HWXA 5T1DA 3PHF1 5HYAA 3PF0A 3V5UA 5HXHA 3WSCA 5JDMA 5JDGA 3AT7A 3VJZA 3V5SA 5HXSA 5JDQA 5JDLA 5HWYA 5HXCA 5HXEA 5JDHA 4ONRA 3M1CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4ECG A;  3PF0 A;  4BGO A;  3AT7 A;  3WSC A; 
#chains in the Genus database with same CATH topology
 2X0C A;  3WUR A;  2KVP A;  4ECG A;  2LQU A;  2MTC A;  2XQY A;  5JDF A;  4BGO A;  5JDN A;  5HXR A;  5HWX A;  4W8P A;  5T1D A;  4F7G B;  5HYA A;  3PHF 1;  3PF0 A;  3V5U A;  5HXH A;  3FYQ A;  3WSC A;  5JDM A;  5JDG A;  3AT7 A;  3VJZ A;  3V5S A;  2KGX A;  3DYJ A;  5HXS A;  5JDQ A;  2L7N A;  1SJ8 A;  5HWY A;  5JDL A;  5HXC A;  3AY5 A;  1SJ7 A;  2L10 A;  2KBB A;  5HXE A;  5JDH A;  4ONR A;  5FZT A;  3M1C A; 
#chains in the Genus database with same CATH homology
 3WUR A;  4ECG A;  2LQU A;  2MTC A;  2XQY A;  5JDF A;  4BGO A;  5JDN A;  5HXR A;  5HWX A;  5T1D A;  3PHF 1;  5HYA A;  3PF0 A;  3V5U A;  5HXH A;  3WSC A;  5JDM A;  5JDG A;  3AT7 A;  3VJZ A;  3V5S A;  5HXS A;  5JDQ A;  5JDL A;  5HWY A;  5HXC A;  5HXE A;  5JDH A;  4ONR A;  3M1C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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