4GJHA

Crystal structure of the traf domain of traf5
Total Genus 40
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
175
structure length
175
Chain Sequence
HKAQLNKNEERFKQLEGACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRLCARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTDLED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Immune system
source organism Mus musculus
publication title Single Amino Acid Substitutions Confer the Antiviral Activity of the TRAF3 Adaptor Protein onto TRAF5
pubmed doi rcsb
molecule keywords TNF receptor-associated factor 5
total genus 40
structure length 175
sequence length 175
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2012-08-09
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4gjhA00
2A25A 3HQMA 4I7DA 1ZMSA 1QSCA 1YZEA 2CR2A 4X3GA 1CA4A 1CZZA 2F1WA 2F1YA 3HU6A 3IVQA 4GJHA 4O1VA 4CA1A 1FLLA 4C9ZA 3MQRA 3HSVA 3ZJBA 4JJQA 1LB4A 2XXNA 1F3VB 1LB6A 1FLKA 5H9MA 4GHUA 4GWMA 1LB5A 3HQHA 2F1XA 4GWNA 3IVBA 4M4EA 3HQLA 4I7BA 1D0JA 1K2FA 1YY6A 5E1TA 1D01A 1CA9A 4KG9A 4YSIA 1D00A 1RF3A 3HQIA 3MQSC 4Z8MA 1D0AA 1L0AA 1CZYA 2F1ZA 2FOJA 2FOOA 2GKWA 3IVVA 2FOPA 4I7CA 1KZZA 4K8UA 2AN6A
chains in the Genus database with same CATH superfamily
2A25A 3HQMA 4I7DA 1ZMSA 1QSCA 1YZEA 2CR2A 4X3GA 1CA4A 1CZZA 2F1WA 2F1YA 3HU6A 3IVQA 4GJHA 4O1VA 4CA1A 1FLLA 4C9ZA 3MQRA 3HSVA 3ZJBA 4JJQA 1LB4A 2XXNA 1F3VB 1LB6A 1FLKA 5H9MA 4GHUA 4GWMA 1LB5A 3HQHA 2F1XA 4GWNA 3IVBA 4M4EA 3HQLA 4I7BA 1D0JA 1K2FA 1YY6A 5E1TA 1D01A 1CA9A 4KG9A 4YSIA 1D00A 1RF3A 3HQIA 3MQSC 4Z8MA 1D0AA 1L0AA 1CZYA 2F1ZA 2FOJA 2FOOA 2GKWA 3IVVA 2FOPA 4I7CA 1KZZA 4K8UA 2AN6A
chains in the Genus database with same CATH topology
2A25A 3HQMA 4I7DA 1ZMSA 1QSCA 1YZEA 2CR2A 4X3GA 1CA4A 1CZZA 2F1WA 2F1YA 3HU6A 3IVQA 4GJHA 4O1VA 4CA1A 1FLLA 4C9ZA 3MQRA 3HSVA 3ZJBA 4JJQA 1LB4A 2XXNA 1F3VB 1LB6A 1FLKA 5H9MA 4GHUA 4GWMA 1LB5A 3HQHA 2F1XA 4GWNA 3IVBA 4M4EA 3HQLA 4I7BA 1D0JA 1K2FA 1YY6A 5E1TA 1D01A 1CA9A 4KG9A 4YSIA 1D00A 1RF3A 3HQIA 3MQSC 4Z8MA 1D0AA 1L0AA 1CZYA 2F1ZA 2FOJA 2FOOA 2GKWA 3IVVA 2FOPA 4I7CA 1KZZA 4K8UA 2AN6A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2A25 A;  3HQM A;  4I7D A;  1ZMS A;  1QSC A;  1YZE A;  2CR2 A;  4X3G A;  1CA4 A;  1CZZ A;  2F1W A;  2F1Y A;  3HU6 A;  3IVQ A;  4GJH A;  4O1V A;  4CA1 A;  1FLL A;  4C9Z A;  3MQR A;  3HSV A;  3ZJB A;  4JJQ A;  1LB4 A;  2XXN A;  1F3V B;  1LB6 A;  1FLK A;  5H9M A;  4GHU A;  4GWM A;  1LB5 A;  3HQH A;  2F1X A;  4GWN A;  3IVB A;  4M4E A;  3HQL A;  4I7B A;  1D0J A;  1K2F A;  1YY6 A;  5E1T A;  1D01 A;  1CA9 A;  4KG9 A;  4YSI A;  1D00 A;  1RF3 A;  3HQI A;  3MQS C;  4Z8M A;  1D0A A;  1L0A A;  1CZY A;  2F1Z A;  2FOJ A;  2FOO A;  2GKW A;  3IVV A;  2FOP A;  4I7C A;  1KZZ A;  4K8U A;  2AN6 A; 
#chains in the Genus database with same CATH topology
 2A25 A;  3HQM A;  4I7D A;  1ZMS A;  1QSC A;  1YZE A;  2CR2 A;  4X3G A;  1CA4 A;  1CZZ A;  2F1W A;  2F1Y A;  3HU6 A;  3IVQ A;  4GJH A;  4O1V A;  4CA1 A;  1FLL A;  4C9Z A;  3MQR A;  3HSV A;  3ZJB A;  4JJQ A;  1LB4 A;  2XXN A;  1F3V B;  1LB6 A;  1FLK A;  5H9M A;  4GHU A;  4GWM A;  1LB5 A;  3HQH A;  2F1X A;  4GWN A;  3IVB A;  4M4E A;  3HQL A;  4I7B A;  1D0J A;  1K2F A;  1YY6 A;  5E1T A;  1D01 A;  1CA9 A;  4KG9 A;  4YSI A;  1D00 A;  1RF3 A;  3HQI A;  3MQS C;  4Z8M A;  1D0A A;  1L0A A;  1CZY A;  2F1Z A;  2FOJ A;  2FOO A;  2GKW A;  3IVV A;  2FOP A;  4I7C A;  1KZZ A;  4K8U A;  2AN6 A; 
#chains in the Genus database with same CATH homology
 2A25 A;  3HQM A;  4I7D A;  1ZMS A;  1QSC A;  1YZE A;  2CR2 A;  4X3G A;  1CA4 A;  1CZZ A;  2F1W A;  2F1Y A;  3HU6 A;  3IVQ A;  4GJH A;  4O1V A;  4CA1 A;  1FLL A;  4C9Z A;  3MQR A;  3HSV A;  3ZJB A;  4JJQ A;  1LB4 A;  2XXN A;  1F3V B;  1LB6 A;  1FLK A;  5H9M A;  4GHU A;  4GWM A;  1LB5 A;  3HQH A;  2F1X A;  4GWN A;  3IVB A;  4M4E A;  3HQL A;  4I7B A;  1D0J A;  1K2F A;  1YY6 A;  5E1T A;  1D01 A;  1CA9 A;  4KG9 A;  4YSI A;  1D00 A;  1RF3 A;  3HQI A;  3MQS C;  4Z8M A;  1D0A A;  1L0A A;  1CZY A;  2F1Z A;  2FOJ A;  2FOO A;  2GKW A;  3IVV A;  2FOP A;  4I7C A;  1KZZ A;  4K8U A;  2AN6 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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