4K8UA

Crystal structure of traf4 traf domain
Total Genus 39
204060801001201401600510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
39
sequence length
178
structure length
178
Chain Sequence
ELQELRRELEELSVGSDGVLIWKIGSYGRRLQEAKAKPNLECFSPAFYTHKYGYKLQVSAFLNGNGSGEGTHLSLYIRVLPGAFDNLLEWPFARRVTFSLLDQSDPGLAKPQHVTETFHPDPNWKNFQKPGTWRGSLDESSLGFGYPKFISHQDIRKRNYVRDDAVFIRAAVELPRKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of the TRAF4 TRAF domain with a coiled-coil domain and its implications for the TRAF4 signalling pathway
doi rcsb
molecule tags Signaling protein
source organism Homo sapiens
molecule keywords TNF receptor-associated factor 4
total genus 39
structure length 178
sequence length 178
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2013-04-18
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4k8uA00
2AN6A 4JJQA 4I7CA 1LB6A 1KZZA 1YZEA 4C9ZA 3HQLA 4I7DA 3MQSC 4KG9A 3HQMA 1LB5A 3IVQA 4X3GA 2XXNA 3HQHA 3HSVA 1RF3A 2F1XA 1QSCA 1ZMSA 3HU6A 1CZZA 1FLKA 3IVBA 3HQIA 1L0AA 3ZJBA 1F3VB 2F1ZA 5H9MA 4CA1A 4YSIA 1D0AA 1D00A 1D01A 4M4EA 5E1TA 2A25A 3MQRA 2CR2A 1LB4A 1YY6A 3IVVA 1CA4A 1FLLA 2F1YA 1CA9A 4I7BA 4GWMA 4Z8MA 4O1VA 2FOJA 4K8UA 4GJHA 1K2FA 2FOPA 4GHUA 4GWNA 2F1WA 2GKWA 1CZYA 2FOOA 1D0JA
chains in the Genus database with same CATH superfamily
2AN6A 4JJQA 4I7CA 1LB6A 1KZZA 1YZEA 4C9ZA 3HQLA 4I7DA 3MQSC 4KG9A 3HQMA 1LB5A 3IVQA 4X3GA 2XXNA 3HQHA 3HSVA 1RF3A 2F1XA 1QSCA 1ZMSA 3HU6A 1CZZA 1FLKA 3IVBA 3HQIA 1L0AA 3ZJBA 1F3VB 2F1ZA 5H9MA 4CA1A 4YSIA 1D0AA 1D00A 1D01A 4M4EA 5E1TA 2A25A 3MQRA 2CR2A 1LB4A 1YY6A 3IVVA 1CA4A 1FLLA 2F1YA 1CA9A 4I7BA 4GWMA 4Z8MA 4O1VA 2FOJA 4K8UA 4GJHA 1K2FA 2FOPA 4GHUA 4GWNA 2F1WA 2GKWA 1CZYA 2FOOA 1D0JA
chains in the Genus database with same CATH topology
2AN6A 4JJQA 4I7CA 1LB6A 1KZZA 1YZEA 4C9ZA 3HQLA 4I7DA 3MQSC 4KG9A 3HQMA 1LB5A 3IVQA 4X3GA 2XXNA 3HQHA 3HSVA 1RF3A 2F1XA 1QSCA 1ZMSA 3HU6A 1CZZA 1FLKA 3IVBA 3HQIA 1L0AA 3ZJBA 1F3VB 2F1ZA 5H9MA 4CA1A 4YSIA 1D0AA 1D00A 1D01A 4M4EA 5E1TA 2A25A 3MQRA 2CR2A 1LB4A 1YY6A 3IVVA 1CA4A 1FLLA 2F1YA 1CA9A 4I7BA 4GWMA 4Z8MA 4O1VA 2FOJA 4K8UA 4GJHA 1K2FA 2FOPA 4GHUA 4GWNA 2F1WA 2GKWA 1CZYA 2FOOA 1D0JA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AN6 A;  4JJQ A;  4I7C A;  1LB6 A;  1KZZ A;  1YZE A;  4C9Z A;  3HQL A;  4I7D A;  3MQS C;  4KG9 A;  3HQM A;  1LB5 A;  3IVQ A;  4X3G A;  2XXN A;  3HQH A;  3HSV A;  1RF3 A;  2F1X A;  1QSC A;  1ZMS A;  3HU6 A;  1CZZ A;  1FLK A;  3IVB A;  3HQI A;  1L0A A;  3ZJB A;  1F3V B;  2F1Z A;  5H9M A;  4CA1 A;  4YSI A;  1D0A A;  1D00 A;  1D01 A;  4M4E A;  5E1T A;  2A25 A;  3MQR A;  2CR2 A;  1LB4 A;  1YY6 A;  3IVV A;  1CA4 A;  1FLL A;  2F1Y A;  1CA9 A;  4I7B A;  4GWM A;  4Z8M A;  4O1V A;  2FOJ A;  4K8U A;  4GJH A;  1K2F A;  2FOP A;  4GHU A;  4GWN A;  2F1W A;  2GKW A;  1CZY A;  2FOO A;  1D0J A; 
#chains in the Genus database with same CATH topology
 2AN6 A;  4JJQ A;  4I7C A;  1LB6 A;  1KZZ A;  1YZE A;  4C9Z A;  3HQL A;  4I7D A;  3MQS C;  4KG9 A;  3HQM A;  1LB5 A;  3IVQ A;  4X3G A;  2XXN A;  3HQH A;  3HSV A;  1RF3 A;  2F1X A;  1QSC A;  1ZMS A;  3HU6 A;  1CZZ A;  1FLK A;  3IVB A;  3HQI A;  1L0A A;  3ZJB A;  1F3V B;  2F1Z A;  5H9M A;  4CA1 A;  4YSI A;  1D0A A;  1D00 A;  1D01 A;  4M4E A;  5E1T A;  2A25 A;  3MQR A;  2CR2 A;  1LB4 A;  1YY6 A;  3IVV A;  1CA4 A;  1FLL A;  2F1Y A;  1CA9 A;  4I7B A;  4GWM A;  4Z8M A;  4O1V A;  2FOJ A;  4K8U A;  4GJH A;  1K2F A;  2FOP A;  4GHU A;  4GWN A;  2F1W A;  2GKW A;  1CZY A;  2FOO A;  1D0J A; 
#chains in the Genus database with same CATH homology
 2AN6 A;  4JJQ A;  4I7C A;  1LB6 A;  1KZZ A;  1YZE A;  4C9Z A;  3HQL A;  4I7D A;  3MQS C;  4KG9 A;  3HQM A;  1LB5 A;  3IVQ A;  4X3G A;  2XXN A;  3HQH A;  3HSV A;  1RF3 A;  2F1X A;  1QSC A;  1ZMS A;  3HU6 A;  1CZZ A;  1FLK A;  3IVB A;  3HQI A;  1L0A A;  3ZJB A;  1F3V B;  2F1Z A;  5H9M A;  4CA1 A;  4YSI A;  1D0A A;  1D00 A;  1D01 A;  4M4E A;  5E1T A;  2A25 A;  3MQR A;  2CR2 A;  1LB4 A;  1YY6 A;  3IVV A;  1CA4 A;  1FLL A;  2F1Y A;  1CA9 A;  4I7B A;  4GWM A;  4Z8M A;  4O1V A;  2FOJ A;  4K8U A;  4GJH A;  1K2F A;  2FOP A;  4GHU A;  4GWN A;  2F1W A;  2GKW A;  1CZY A;  2FOO A;  1D0J A; 
1CA4A 1CA9A 1RF3A 3ZJBA 4GJHA 4M4EA 5H10A 5YC1A 7YPCA
similar chains in the Genus database (40% sequence similarity)
None
similar chains in the pdb database (40% sequence similarity)

 
#similar chains in the Genus database (40% sequence similarity)
1CA4 A; 1CA9 A; 1RF3 A; 3ZJB A; 4GJH A; 4M4E A; 5H10 A; 5YC1 A; 7YPC A; 
#similar chains, but unknotted

#similar chains in the pdb database (40% sequence similarity)


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