The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
49
|
sequence length |
135
|
structure length |
135
|
Chain Sequence |
SHKKSGTYWATLITAFLKTVSKVEELDCVDSAVLVDVSKIITLTQEFRRHYDSVYRADYGPALKNWKRDLSKLFTSLFVDVINSGRIVGFFDVGRYVCEEVLCPGSWTEDHELLNDCMTHFFIENNLMNHFPLED
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Targeting gamma-herpesvirus 68 Bcl-2-mediated down-regulation of autophagy.
pubmed doi rcsb |
| molecule tags |
Viral protein/apoptosis
|
| source organism |
Murid herpesvirus 4
|
| molecule keywords |
Bcl-2 homolog (Gene 16?)
|
| total genus |
49
|
| structure length |
135
|
| sequence length |
135
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2013-08-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF15286 | Bcl-2_3 | Apoptosis regulator M11, B cell 2 leukaemia/lymphoma like |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Apoptosis Regulator Bcl-x | Blc2-like |
#chains in the Genus database with same CATH superfamily 1G5J A; 2ROC A; 2VOG A; 4MI8 A; 5FDO A; 3IHE A; 5IEZ A; 3IHD A; 1DDB A; 1R2H A; 3CVA X; 2O2M A; 5C3F A; 4WMR A; 2B48 A; 4U2V A; 3WIX A; 2WH6 A; 4BD8 A; 1YSW A; 3KJ2 A; 3KZ0 A; 1PQ1 A; 3IIG A; 1R2E A; 3MQP A; 4ZIF A; 4BD6 A; 4BDU A; 4ZIH A; 2VM6 A; 2MHS A; 2K7W A; 1OHU A; 1WSX A; 2NL9 A; 5IF4 A; 1O0L A; 2O22 A; 4HW2 A; 1R2D A; 5FC4 A; 3BL2 A; 3IHC A; 5JSB A; 1G5M A; 4QVX A; 1K3K A; 4ZBF A; 2BID A; 1R2I A; 1R2G A; 5FMI A; 4OQ5 A; 4ZIE A; 3D7V A; 1MK3 A; 1PQ0 A; 2XA0 A; 1F16 A; 2M5B A; 3DVU A; 3I1H A; 1GJH A; 2A5Y A; 3IIH A; 2ME8 A; 2O21 A; 2IMT A; 2YV6 A; 4HW4 A; 1AF3 A; 2W3L A; 3PK1 A; 2MEJ A; 1ZY3 A; 4U2U A; 4YK9 A; 5KU9 A; 3IO9 A; 4S0O A; 2NLA A; 4B4S A; 4OYD A; 3WIY A; 2VOH A; 2VOI A; 1Q59 A; 2IMS A; 2VOF A; 4QNQ A; 4BD2 A; 2KUA A; 4G35 A; 4ZIG A; 1LXL A; 1TY4 A; 4BPJ A; 4S0P A; 4BD7 A; 3KJ0 A; 3MK8 A; 1MAZ A; 3ILC A; 2O2N A; 4ZBI A; 5C6H A; 4ZEQ A; 4YJ4 A; 4ZII A; 2ABO A; 5KTG A; 2V6Q A; 4HW3 A; 2XPX A; 1YSG A; 2JCN A; 2ROD A; 4BPI A; 2JM6 B; 2O2F A; 2LR1 A; 4K5B C; 5FDR A; 4OQ6 A; 2KBW A; 3KJ1 A; 1BXL A; 1YSI A; 2PQK A; 3QBR A; 2BZW A; 1YSN A; #chains in the Genus database with same CATH topology 1G5J A; 2ROC A; 2VOG A; 4MI8 A; 5FDO A; 3IHE A; 5IEZ A; 3IHD A; 1DDB A; 1R2H A; 3CVA X; 2O2M A; 5C3F A; 4WMR A; 2B48 A; 4U2V A; 3WIX A; 2VVY A; 2WH6 A; 4BD8 A; 1YSW A; 4BBB A; 3KJ2 A; 2JBX A; 3KZ0 A; 2K36 A; 1PQ1 A; 3IIG A; 1R2E A; 3MQP A; 4ZIF A; 2O42 A; 4BD6 A; 4BDU A; 2JBY A; 4ZIH A; 2VM6 A; 2MHS A; 2K7W A; 1OHU A; 2VVX A; 1WSX A; 2NL9 A; 5IF4 A; 1O0L A; 2O22 A; 4HW2 A; 1R2D A; 5FC4 A; 3BL2 A; 3IHC A; 5JSB A; 1G5M A; 4D2M A; 4QVX A; 1K3K A; 4ZBF A; 2BID A; 1R2I A; 1R2G A; 5FMI A; 4OQ5 A; 4ZIE A; 3D7V A; 2UXE A; 1MK3 A; 4BBC A; 1PQ0 A; 2XA0 A; 2VVW A; 2M5B A; 3DVU A; 3I1H A; 1F16 A; 1GJH A; 2A5Y A; 3IIH A; 2ME8 A; 2O21 A; 2IMT A; 4M0S A; 2YV6 A; 4HW4 A; 1AF3 A; 2W3L A; 4LQK A; 3PK1 A; 2MEJ A; 1ZY3 A; 4U2U A; 4YK9 A; 4UF2 A; 5KU9 A; 3IO9 A; 4S0O A; 2NLA A; 4B4S A; 4OYD A; 4BBD A; 3WIY A; 2VOH A; 2VOI A; 1Q59 A; 2IMS A; 4UF3 A; 2VOF A; 4QNQ A; 4BD2 A; 2KUA A; 4D2L A; 4G35 A; 4ZIG A; 1LXL A; 1TY4 A; 4BPJ A; 4S0P A; 4BD7 A; 3KJ0 A; 3MK8 A; 1MAZ A; 2I39 A; 2O2N A; 3ILC A; 2VTY A; 4UF1 A; 4ZBI A; 5C6H A; 4ZEQ A; 4YJ4 A; 4ZII A; 2ABO A; 5KTG A; 2V6Q A; 4HW3 A; 2XPX A; 1YSG A; 2JCN A; 2ROD A; 4BPI A; 2JM6 B; 3JRV A; 2O2F A; 2LR1 A; 4K5B C; 5FDR A; 4OQ6 A; 2KBW A; 3KJ1 A; 1BXL A; 1YSI A; 2PQK A; 3QBR A; 2BZW A; 1YSN A; #chains in the Genus database with same CATH homology 1G5J A; 2ROC A; 2VOG A; 4MI8 A; 5FDO A; 3IHE A; 5IEZ A; 3IHD A; 1DDB A; 1R2H A; 3CVA X; 2O2M A; 5C3F A; 4WMR A; 2B48 A; 4U2V A; 3WIX A; 2WH6 A; 4BD8 A; 1YSW A; 3KJ2 A; 3KZ0 A; 1PQ1 A; 3IIG A; 1R2E A; 3MQP A; 4ZIF A; 4BD6 A; 4BDU A; 4ZIH A; 2VM6 A; 2MHS A; 2K7W A; 1OHU A; 1WSX A; 2NL9 A; 5IF4 A; 1O0L A; 2O22 A; 4HW2 A; 1R2D A; 5FC4 A; 3BL2 A; 3IHC A; 5JSB A; 1G5M A; 4QVX A; 1K3K A; 4ZBF A; 2BID A; 1R2I A; 1R2G A; 5FMI A; 4OQ5 A; 4ZIE A; 3D7V A; 1MK3 A; 1PQ0 A; 2XA0 A; 1F16 A; 2M5B A; 3DVU A; 3I1H A; 1GJH A; 2A5Y A; 3IIH A; 2ME8 A; 2O21 A; 2IMT A; 2YV6 A; 4HW4 A; 1AF3 A; 2W3L A; 3PK1 A; 2MEJ A; 1ZY3 A; 4U2U A; 4YK9 A; 5KU9 A; 3IO9 A; 4S0O A; 2NLA A; 4B4S A; 4OYD A; 3WIY A; 2VOH A; 2VOI A; 1Q59 A; 2IMS A; 2VOF A; 4QNQ A; 4BD2 A; 2KUA A; 4G35 A; 4ZIG A; 1LXL A; 1TY4 A; 4BPJ A; 4S0P A; 4BD7 A; 3KJ0 A; 3MK8 A; 1MAZ A; 3ILC A; 2O2N A; 4ZBI A; 5C6H A; 4ZEQ A; 4YJ4 A; 4ZII A; 2ABO A; 5KTG A; 2V6Q A; 4HW3 A; 2XPX A; 1YSG A; 2JCN A; 2ROD A; 4BPI A; 2JM6 B; 2O2F A; 2LR1 A; 4K5B C; 5FDR A; 4OQ6 A; 2KBW A; 3KJ1 A; 1BXL A; 1YSI A; 2PQK A; 3QBR A; 2BZW A; 1YSN A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
