The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
120
|
structure length |
115
|
Chain Sequence |
PAKTLEAVSAVADWLRDPQRESPARAQLAEAVRLTARTLAAVAPGASVEVRVPPFVAVQCISGGTPPNVVETDARTWLLLATGLLDIADAGASVQMSGSRAAEVAHWLPVVRIDP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
A structural and functional investigation of a novel protein from Mycobacterium smegmatis implicated in mycobacterial macrophage survivability.
pubmed doi rcsb |
| molecule tags |
Unknown function
|
| source organism |
Mycobacterium smegmatis
|
| molecule keywords |
Mycobacterial protein
|
| total genus |
33
|
| structure length |
115
|
| sequence length |
120
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2013-11-28 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF17844 | SCP_3 | Bacterial SCP ortholog |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Nonspecific Lipid-transfer Protein; Chain A | Nonspecific Lipid-transfer Protein; Chain A |
#chains in the Genus database with same CATH superfamily 4ZY7 A; 4NSS A; #chains in the Genus database with same CATH topology 3R1K A; 1IKT A; 2YHE A; 3RYO A; 3SSM A; 2CFZ A; 4ZY7 A; 2CG2 A; 2C0L B; 4JGX A; 3SSN A; 2NSF A; 2NBN A; 2CG3 A; 4UEI A; 2QZT A; 3BKS A; 5AJL A; 4AV7 A; 5A23 A; 4PDX A; 2CX7 A; 4QB9 A; 3N7Z A; 3CNU A; 3SSO A; 3SXN A; 5IV0 A; 2I00 A; 5AIJ A; 2CFU A; 2KSI A; 3BDQ A; 4NSS A; 2HV2 A; 2OZG A; 5EBV A; 1WFR A; 2KSH A; 1QND A; 4MY3 A; 3SXO A; 2NSG A; 2NBM A; 3UY5 A; 4MY0 A; 3BN8 A; 5EC4 A; 4AXH A; 3BKR A; 1C44 A; 1PZ4 A; 4JD6 A; 4NUR A; #chains in the Genus database with same CATH homology 3SSM A; 4ZY7 A; 3SSN A; 2NSG A; 2NSF A; 3SSO A; 4NSS A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
