4O1V | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	141
structure length	141
Chain Sequence	SGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 141 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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141 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Protein binding
source organism	Homo sapiens
publication title	SPOP Promotes Tumorigenesis by Acting as a Key Regulatory Hub in Kidney Cancer. pubmed doi rcsb
molecule keywords	Speckle-type POZ protein
total genus	28
structure length	141
sequence length	141
ec nomenclature
pdb deposition date	2013-12-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00917	MATH	MATH domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	4o1vA01

1K2FA 4KG9A 3HQMA 1FLKA 1F3VB 1FLLA 3MQRA 4GJHA 1KZZA 4GWNA 1D0AA 1YY6A 4X3GA 4Z8MA 4I7DA 3ZJBA 4YSIA 1LB5A 2GKWA 4GWMA 3HU6A 2FOOA 3HQLA 3HQIA 1CA9A 2FOPA 4JJQA 1CZZA 2F1WA 2CR2A 1QSCA 2AN6A 2A25A 4GHUA 5E1TA 1D0JA 3IVVA 3MQSC 3IVBA 1D01A 1LB6A 1ZMSA 2FOJA 4O1VA 3IVQA 2F1ZA 4K8UA 2F1XA 1L0AA 4M4EA 3HSVA 2XXNA 4CA1A 2F1YA 1D00A 1CZYA 1LB4A 1RF3A 4C9ZA 4I7CA 1YZEA 4I7BA 1CA4A 3HQHA 5H9MA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1K2F A;  4KG9 A;  3HQM A;  1FLK A;  1F3V B;  1FLL A;  3MQR A;  4GJH A;  1KZZ A;  4GWN A;  1D0A A;  1YY6 A;  4X3G A;  4Z8M A;  4I7D A;  3ZJB A;  4YSI A;  1LB5 A;  2GKW A;  4GWM A;  3HU6 A;  2FOO A;  3HQL A;  3HQI A;  1CA9 A;  2FOP A;  4JJQ A;  1CZZ A;  2F1W A;  2CR2 A;  1QSC A;  2AN6 A;  2A25 A;  4GHU A;  5E1T A;  1D0J A;  3IVV A;  3MQS C;  3IVB A;  1D01 A;  1LB6 A;  1ZMS A;  2FOJ A;  4O1V A;  3IVQ A;  2F1Z A;  4K8U A;  2F1X A;  1L0A A;  4M4E A;  3HSV A;  2XXN A;  4CA1 A;  2F1Y A;  1D00 A;  1CZY A;  1LB4 A;  1RF3 A;  4C9Z A;  4I7C A;  1YZE A;  4I7B A;  1CA4 A;  3HQH A;  5H9M A; 
#chains in the Genus database with same CATH topology
 1K2F A;  4KG9 A;  3HQM A;  1FLK A;  1F3V B;  1FLL A;  3MQR A;  4GJH A;  1KZZ A;  4GWN A;  1D0A A;  1YY6 A;  4X3G A;  4Z8M A;  4I7D A;  3ZJB A;  4YSI A;  1LB5 A;  2GKW A;  4GWM A;  3HU6 A;  2FOO A;  3HQL A;  3HQI A;  1CA9 A;  2FOP A;  4JJQ A;  1CZZ A;  2F1W A;  2CR2 A;  1QSC A;  2AN6 A;  2A25 A;  4GHU A;  5E1T A;  1D0J A;  3IVV A;  3MQS C;  3IVB A;  1D01 A;  1LB6 A;  1ZMS A;  2FOJ A;  4O1V A;  3IVQ A;  2F1Z A;  4K8U A;  2F1X A;  1L0A A;  4M4E A;  3HSV A;  2XXN A;  4CA1 A;  2F1Y A;  1D00 A;  1CZY A;  1LB4 A;  1RF3 A;  4C9Z A;  4I7C A;  1YZE A;  4I7B A;  1CA4 A;  3HQH A;  5H9M A; 
#chains in the Genus database with same CATH homology
 1K2F A;  4KG9 A;  3HQM A;  1FLK A;  1F3V B;  1FLL A;  3MQR A;  4GJH A;  1KZZ A;  4GWN A;  1D0A A;  1YY6 A;  4X3G A;  4Z8M A;  4I7D A;  3ZJB A;  4YSI A;  1LB5 A;  2GKW A;  4GWM A;  3HU6 A;  2FOO A;  3HQL A;  3HQI A;  1CA9 A;  2FOP A;  4JJQ A;  1CZZ A;  2F1W A;  2CR2 A;  1QSC A;  2AN6 A;  2A25 A;  4GHU A;  5E1T A;  1D0J A;  3IVV A;  3MQS C;  3IVB A;  1D01 A;  1LB6 A;  1ZMS A;  2FOJ A;  4O1V A;  3IVQ A;  2F1Z A;  4K8U A;  2F1X A;  1L0A A;  4M4E A;  3HSV A;  2XXN A;  4CA1 A;  2F1Y A;  1D00 A;  1CZY A;  1LB4 A;  1RF3 A;  4C9Z A;  4I7C A;  1YZE A;  4I7B A;  1CA4 A;  3HQH A;  5H9M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4O1VA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations