5E1T | Genus

Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	49
sequence length	192
structure length	192
Chain Sequence	LDRERILSLEQRVVELQQTLAQKDQALGKLEQSLRLMEEASFDGTFLWKITNVTRRCHESACGRTVSLFSPAFYTAKYGYKLCLRLYLNGDGTGKRTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREHAIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVETS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 192 atoms

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192 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Protein binding
source organism	Homo sapiens
publication title	Crystal structure of TRAF1 TRAF domain and its implications in the TRAF1-mediated intracellular signaling pathway pubmed doi rcsb
molecule keywords	TNF receptor-associated factor 1
total genus	49
structure length	192
sequence length	192
chains with identical sequence	B, C
ec nomenclature
pdb deposition date	2015-09-30

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.210.10	Mainly Beta	Sandwich	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A	5e1tA00

1F3VB 1ZMSA 2F1WA 2GKWA 2F1XA 3HQIA 1CA9A 1LB4A 1CZZA 4O1VA 2CR2A 1YZEA 2FOJA 1FLLA 1LB6A 1D00A 2AN6A 4GWNA 4M4EA 1QSCA 3ZJBA 1K2FA 1D0JA 3IVVA 1RF3A 2FOOA 3MQRA 3HQMA 5E1TA 4I7BA 4Z8MA 2F1YA 2A25A 3MQSC 1KZZA 4JJQA 3HSVA 4GWMA 4CA1A 4I7CA 2FOPA 3HQHA 1CA4A 4K8UA 4GHUA 3HU6A 2F1ZA 4KG9A 4YSIA 3HQLA 1L0AA 1CZYA 4C9ZA 3IVQA 4I7DA 4X3GA 3IVBA 1D0AA 1D01A 1LB5A 2XXNA 4GJHA 5H9MA 1YY6A 1FLKA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1F3V B;  1ZMS A;  2F1W A;  2GKW A;  2F1X A;  3HQI A;  1CA9 A;  1LB4 A;  1CZZ A;  4O1V A;  2CR2 A;  1YZE A;  2FOJ A;  1FLL A;  1LB6 A;  1D00 A;  2AN6 A;  4GWN A;  4M4E A;  1QSC A;  3ZJB A;  1K2F A;  1D0J A;  3IVV A;  1RF3 A;  2FOO A;  3MQR A;  3HQM A;  5E1T A;  4I7B A;  4Z8M A;  2F1Y A;  2A25 A;  3MQS C;  1KZZ A;  4JJQ A;  3HSV A;  4GWM A;  4CA1 A;  4I7C A;  2FOP A;  3HQH A;  1CA4 A;  4K8U A;  4GHU A;  3HU6 A;  2F1Z A;  4KG9 A;  4YSI A;  3HQL A;  1L0A A;  1CZY A;  4C9Z A;  3IVQ A;  4I7D A;  4X3G A;  3IVB A;  1D0A A;  1D01 A;  1LB5 A;  2XXN A;  4GJH A;  5H9M A;  1YY6 A;  1FLK A; 
#chains in the Genus database with same CATH topology
 1F3V B;  1ZMS A;  2F1W A;  2GKW A;  2F1X A;  3HQI A;  1CA9 A;  1LB4 A;  1CZZ A;  4O1V A;  2CR2 A;  1YZE A;  2FOJ A;  1FLL A;  1LB6 A;  1D00 A;  2AN6 A;  4GWN A;  4M4E A;  1QSC A;  3ZJB A;  1K2F A;  1D0J A;  3IVV A;  1RF3 A;  2FOO A;  3MQR A;  3HQM A;  5E1T A;  4I7B A;  4Z8M A;  2F1Y A;  2A25 A;  3MQS C;  1KZZ A;  4JJQ A;  3HSV A;  4GWM A;  4CA1 A;  4I7C A;  2FOP A;  3HQH A;  1CA4 A;  4K8U A;  4GHU A;  3HU6 A;  2F1Z A;  4KG9 A;  4YSI A;  3HQL A;  1L0A A;  1CZY A;  4C9Z A;  3IVQ A;  4I7D A;  4X3G A;  3IVB A;  1D0A A;  1D01 A;  1LB5 A;  2XXN A;  4GJH A;  5H9M A;  1YY6 A;  1FLK A; 
#chains in the Genus database with same CATH homology
 1F3V B;  1ZMS A;  2F1W A;  2GKW A;  2F1X A;  3HQI A;  1CA9 A;  1LB4 A;  1CZZ A;  4O1V A;  2CR2 A;  1YZE A;  2FOJ A;  1FLL A;  1LB6 A;  1D00 A;  2AN6 A;  4GWN A;  4M4E A;  1QSC A;  3ZJB A;  1K2F A;  1D0J A;  3IVV A;  1RF3 A;  2FOO A;  3MQR A;  3HQM A;  5E1T A;  4I7B A;  4Z8M A;  2F1Y A;  2A25 A;  3MQS C;  1KZZ A;  4JJQ A;  3HSV A;  4GWM A;  4CA1 A;  4I7C A;  2FOP A;  3HQH A;  1CA4 A;  4K8U A;  4GHU A;  3HU6 A;  2F1Z A;  4KG9 A;  4YSI A;  3HQL A;  1L0A A;  1CZY A;  4C9Z A;  3IVQ A;  4I7D A;  4X3G A;  3IVB A;  1D0A A;  1D01 A;  1LB5 A;  2XXN A;  4GJH A;  5H9M A;  1YY6 A;  1FLK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5E1TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization