The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
107
|
sequence length |
327
|
structure length |
327
|
Chain Sequence |
MYRVAVIPGDGIGPEVIDGAVRVLKAVTGRVRFEYYEGGVDVFQECGSPIREEDLEEIRRSDAVLFGATTTPFDLPGYRSLILTLRKELGLYANLRIIPDLRTGREIVIVRENSEGLYFGIGAVVNGRAVDVRLITREGAERIARFAVEQAKARGSFITFVHKANVLTGDKFFRRIVREVAGEEGVEVRDAIIDSFTIKLVRNPWEHGVILSENLFGDILSDLATVHAGSIGIVPSGNYGDGIALFEPVHGSAPDIAGKGIANPIGAILSGAMLLDYLGLDGSLIRAAVRGYVVNGELTPDMGGRARTEDVVRGIIGEIEDLLSMDE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and function of an ancestral-type beta-decarboxylating dehydrogenase from Thermococcus kodakarensis
pubmed doi rcsb |
| molecule tags |
Oxidoreductase
|
| source organism |
Thermococcus kodakarensis (strain atcc baa-918 / jcm 12380 / kod1)
|
| molecule keywords |
Homoisocitrate dehydrogenase
|
| total genus |
107
|
| structure length |
327
|
| sequence length |
327
|
| ec nomenclature | |
| pdb deposition date | 2016-01-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00180 | Iso_dh | Isocitrate/isopropylmalate dehydrogenase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 3-Layer(aba) Sandwich | Isopropylmalate Dehydrogenase | Isopropylmalate Dehydrogenase |
#chains in the Genus database with same CATH superfamily 1XAC A; 4XRX A; 4JQP A; 5GRH B; 1IPD A; 2Y40 A; 1IDD A; 2DHT A; 3VL3 A; 1HQS A; 1GRP A; 9ICD A; 7ICD A; 5J33 A; 3FMX X; 1TYO A; 8ICD A; 1CW1 A; 3VKZ A; 4P69 C; 1PS7 A; 4UMX A; 1PB1 A; 1XAB A; 1YCO A; 3TY3 A; 5HN5 A; 1P8F A; 4I3K A; 3WZX A; 2UXR A; 3R8W A; 1W0D A; 1HEX A; 1U7N A; 3UDU A; 1V94 A; 3AH3 A; 4HCX A; 2E5M A; 1PB3 A; 4IWH A; 5LGE A; 1IDM A; 3VL7 A; 2UXQ A; 4ATY A; 3ICD A; 3VL4 A; 1XAD A; 4AJR A; 4L03 A; 4AJ3 A; 3DMS A; 2Y3Z A; 3VL2 A; 4F7I A; 1IDC A; 4L06 A; 4AJA A; 5ICD A; 3LCB C; 1T0L A; 6ICD A; 5K10 A; 1ISO A; 4AJS A; 1IDE A; 5GRF A; 5GRE A; 3U1H A; 2IV0 A; 2D1C A; 5I95 A; 2ZTW A; 1DR8 A; 3VMK A; 4JA8 A; 2Y41 A; 5HN6 A; 1CNZ A; 1OSI A; 1WAL A; 3ASJ A; 5K11 A; 5GRF B; 3LXY A; 3FLK A; 4YB4 A; 5GRE B; 5J32 A; 1AI3 A; 1AI2 A; 1OSJ A; 1XKD A; 3TNG A; 4AJB A; 1A05 A; 1WPW A; 3INM A; 1GC9 A; 1VI1 A; 4AOY A; 3TSN A; 2Y42 A; 1GC8 A; 4L04 A; 5L58 A; 3VMJ A; 3MAR A; 1CM7 A; 5DE1 A; 1HJ6 A; 2AYQ A; 1T09 A; 2QFX A; 1G2U A; 5I96 A; 4UMY A; 2QFV A; 1VLC A; 1DPZ A; 3MAP A; 3UDO A; 5J34 A; 1GRO A; 5GRL A; 3WZY A; 3BLV A; 1XGV A; 3WZV A; 3BLX A; 4ICD A; 3U9E A; 4AOU A; 4AJC A; 1DR0 A; 1LWD A; 3US8 A; 1XAA A; 1PS6 A; 3WZW A; 3MAS A; 4WUO A; 5L57 A; 1V53 A; 1PTM A; 4Y1P A; 5GRL B; 2E0C A; 1IKA A; 2QFW A; 3BLV B; 2D4V A; 3BLX B; 4XS3 A; 3VL6 A; 1R8K A; 5GRI A; 1ZOR A; 1BL5 A; 5HN4 A; 1V5B A; 3MAS B; 5GRH A; 1X0L A; 1CW7 A; 2QFY A; 4BNP A; 1SJS A; 1YXO A; 2G4O A; 3TY4 A; 3VML A; 4AOV A; 2HI1 A; 5HN3 A; 3UF6 A; 4KZO A; 1CW4 A; 5GRI B; 4I3L A; 1IDF A; 4XXV A; #chains in the Genus database with same CATH topology 1XAC A; 4XRX A; 4JQP A; 5GRH B; 1IPD A; 2Y40 A; 1IDD A; 2DHT A; 3VL3 A; 1HQS A; 1GRP A; 9ICD A; 7ICD A; 5J33 A; 3FMX X; 1TYO A; 8ICD A; 1CW1 A; 3VKZ A; 4P69 C; 1PS7 A; 4UMX A; 1PB1 A; 1XAB A; 1YCO A; 3TY3 A; 5HN5 A; 1P8F A; 4I3K A; 3WZX A; 2UXR A; 3R8W A; 1W0D A; 1HEX A; 1U7N A; 3UDU A; 1V94 A; 3AH3 A; 4HCX A; 2E5M A; 1PB3 A; 4IWH A; 5LGE A; 1IDM A; 3VL7 A; 2UXQ A; 4ATY A; 3ICD A; 3VL4 A; 1XAD A; 4AJR A; 4L03 A; 4AJ3 A; 3DMS A; 2Y3Z A; 3VL2 A; 4F7I A; 1IDC A; 4L06 A; 4AJA A; 5ICD A; 3LCB C; 1T0L A; 6ICD A; 5K10 A; 1ISO A; 4AJS A; 1IDE A; 5GRF A; 5GRE A; 3U1H A; 2IV0 A; 2D1C A; 5I95 A; 2ZTW A; 1DR8 A; 3VMK A; 4JA8 A; 2Y41 A; 5HN6 A; 1CNZ A; 1OSI A; 1WAL A; 3ASJ A; 5K11 A; 5GRF B; 3LXY A; 3FLK A; 4YB4 A; 5GRE B; 5J32 A; 1AI3 A; 1AI2 A; 1OSJ A; 1XKD A; 3TNG A; 4AJB A; 1A05 A; 1WPW A; 3INM A; 1GC9 A; 1VI1 A; 4AOY A; 3TSN A; 2Y42 A; 1GC8 A; 4L04 A; 5L58 A; 3VMJ A; 3MAR A; 1CM7 A; 5DE1 A; 1HJ6 A; 2AYQ A; 1T09 A; 2QFX A; 1G2U A; 5I96 A; 4UMY A; 2QFV A; 1VLC A; 1DPZ A; 3MAP A; 3UDO A; 5J34 A; 1GRO A; 5GRL A; 3WZY A; 3BLV A; 1XGV A; 3WZV A; 3BLX A; 4ICD A; 3U9E A; 4AOU A; 4AJC A; 1DR0 A; 1LWD A; 3US8 A; 1XAA A; 1PS6 A; 3WZW A; 3MAS A; 4WUO A; 5L57 A; 1V53 A; 1PTM A; 4Y1P A; 5GRL B; 2E0C A; 1IKA A; 2QFW A; 3BLV B; 2D4V A; 3BLX B; 4XS3 A; 3VL6 A; 1R8K A; 5GRI A; 1ZOR A; 1BL5 A; 5HN4 A; 1V5B A; 3MAS B; 5GRH A; 1X0L A; 1CW7 A; 2QFY A; 4BNP A; 1SJS A; 1YXO A; 2G4O A; 3TY4 A; 3VML A; 4AOV A; 2HI1 A; 5HN3 A; 3UF6 A; 4KZO A; 1CW4 A; 5GRI B; 4I3L A; 1IDF A; 4XXV A; #chains in the Genus database with same CATH homology 1XAC A; 4XRX A; 4JQP A; 5GRH B; 1IPD A; 2Y40 A; 1IDD A; 2DHT A; 3VL3 A; 1HQS A; 1GRP A; 9ICD A; 7ICD A; 5J33 A; 3FMX X; 1TYO A; 8ICD A; 1CW1 A; 3VKZ A; 4P69 C; 1PS7 A; 4UMX A; 1PB1 A; 1XAB A; 1YCO A; 3TY3 A; 5HN5 A; 1P8F A; 4I3K A; 3WZX A; 2UXR A; 3R8W A; 1W0D A; 1HEX A; 1U7N A; 3UDU A; 1V94 A; 3AH3 A; 4HCX A; 2E5M A; 1PB3 A; 4IWH A; 5LGE A; 1IDM A; 3VL7 A; 2UXQ A; 4ATY A; 3ICD A; 3VL4 A; 1XAD A; 4AJR A; 4L03 A; 4AJ3 A; 3DMS A; 2Y3Z A; 3VL2 A; 4F7I A; 1IDC A; 4L06 A; 4AJA A; 5ICD A; 3LCB C; 1T0L A; 6ICD A; 5K10 A; 1ISO A; 4AJS A; 1IDE A; 5GRF A; 5GRE A; 3U1H A; 2IV0 A; 2D1C A; 5I95 A; 2ZTW A; 1DR8 A; 3VMK A; 4JA8 A; 2Y41 A; 5HN6 A; 1CNZ A; 1OSI A; 1WAL A; 3ASJ A; 5K11 A; 5GRF B; 3LXY A; 3FLK A; 4YB4 A; 5GRE B; 5J32 A; 1AI3 A; 1AI2 A; 1OSJ A; 1XKD A; 3TNG A; 4AJB A; 1A05 A; 1WPW A; 3INM A; 1GC9 A; 1VI1 A; 4AOY A; 3TSN A; 2Y42 A; 1GC8 A; 4L04 A; 5L58 A; 3VMJ A; 3MAR A; 1CM7 A; 5DE1 A; 1HJ6 A; 2AYQ A; 1T09 A; 2QFX A; 1G2U A; 5I96 A; 4UMY A; 2QFV A; 1VLC A; 1DPZ A; 3MAP A; 3UDO A; 5J34 A; 1GRO A; 5GRL A; 3WZY A; 3BLV A; 1XGV A; 3WZV A; 3BLX A; 4ICD A; 3U9E A; 4AOU A; 4AJC A; 1DR0 A; 1LWD A; 3US8 A; 1XAA A; 1PS6 A; 3WZW A; 3MAS A; 4WUO A; 5L57 A; 1V53 A; 1PTM A; 4Y1P A; 5GRL B; 2E0C A; 1IKA A; 2QFW A; 3BLV B; 2D4V A; 3BLX B; 4XS3 A; 3VL6 A; 1R8K A; 5GRI A; 1ZOR A; 1BL5 A; 5HN4 A; 1V5B A; 3MAS B; 5GRH A; 1X0L A; 1CW7 A; 2QFY A; 4BNP A; 1SJS A; 1YXO A; 2G4O A; 3TY4 A; 3VML A; 4AOV A; 2HI1 A; 5HN3 A; 3UF6 A; 4KZO A; 1CW4 A; 5GRI B; 4I3L A; 1IDF A; 4XXV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
