8RUC | Genus

Total Genus 25

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	123
structure length	123
Chain Sequence	MQVWPILNLKKYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNREVQCISFIAYKPAGY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 123 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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123 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Large structures at high resolution: the 1.6 A crystal structure of spinach ribulose-1,5-bisphosphate carboxylase/oxygenase complexed with 2-carboxyarabinitol bisphosphate. pubmed doi rcsb
molecule keywords	RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE
molecule tags	Lyase (carbon-carbon)
total genus	25
structure length	123
sequence length	123
chains with identical sequence	J, K, L
ec nomenclature	ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date	1996-02-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
I	PF00101	RuBisCO_small	Ribulose bisphosphate carboxylase, small chain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.190.10	Alpha Beta	2-Layer Sandwich	Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase	Ribulose bisphosphate carboxylase, small subunit	8rucI00

1SVDM 1UWAC 3ZXWB 1BWVS 1RBLI 2VDHI 4RUBS 1RLCS 1AUSS 2VDII 1UW9C 1UZDC 2V67I 2V63I 2YBVB 2V6AI 1IR1S 1RLDS 4F0HB 1UPPI 1BXNI 2V69I 1UZHC 4MKVS 1UPMC 1AA1C 1GK8I 4F0KB 3RUBS 1RXOC 3AXMS 3AXKS 8RUCI 1RCOC 4F0MB 1IWAB 1IR21 1EJ7S 1RBOC 1RSCI 1WDDS 2V68I 4HHHS 1RCXC
chains in the Genus database with same CATH superfamily

1SVDM 4QVIA 4REOA 3QOYA 1UWAC 3ZXWB 1BWVS 1RBLI 2VDHI 5DM60 2DFXI 4QG3A 4RUBS 1RLCS 1AUSS 2VDII 3UMYA 2FHZA 1UW9C 1UZDC 2V67I 2V63I 1ZHOA 3U4MA 2YBVB 2V6AI 1IR1S 1RLDS 1CJSA 1UPPI 1BXNI 2V69I 4F0HB 4F9TA 1MZPA 1UZHC 4MKVS 5DM70 1UPMC 4LQ4A 1AA1C 3FPNA 4QGBA 3U56A 1GK8I 4F0KB 3RUBS 1RXOC 3AXMS 3AXKS 8RUCI 1RCOC 1I2AA 1IWAB 4F0MB 3ZQJA 3TG8A 1DWUA 1AD2A 1IR21 1EJ7S 1RBOC 1RSCI 4DFCB 2HW8A 1U63A 1WDDS 2V68I 4HHHS 1RCXC
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1SVD M;  1UWA C;  3ZXW B;  1BWV S;  1RBL I;  2VDH I;  4RUB S;  1RLC S;  1AUS S;  2VDI I;  1UW9 C;  1UZD C;  2V67 I;  2V63 I;  2YBV B;  2V6A I;  1IR1 S;  1RLD S;  4F0H B;  1UPP I;  1BXN I;  2V69 I;  1UZH C;  4MKV S;  1UPM C;  1AA1 C;  1GK8 I;  4F0K B;  3RUB S;  1RXO C;  3AXM S;  3AXK S;  8RUC I;  1RCO C;  4F0M B;  1IWA B;  1IR2 1;  1EJ7 S;  1RBO C;  1RSC I;  1WDD S;  2V68 I;  4HHH S;  1RCX C; 
#chains in the Genus database with same CATH topology
 1SVD M;  4QVI A;  4REO A;  3QOY A;  1UWA C;  3ZXW B;  1BWV S;  1RBL I;  2VDH I;  5DM6 0;  2DFX I;  4QG3 A;  4RUB S;  1RLC S;  1AUS S;  2VDI I;  3UMY A;  2FHZ A;  1UW9 C;  1UZD C;  2V67 I;  2V63 I;  1ZHO A;  3U4M A;  2YBV B;  2V6A I;  1IR1 S;  1RLD S;  1CJS A;  1UPP I;  1BXN I;  2V69 I;  4F0H B;  4F9T A;  1MZP A;  1UZH C;  4MKV S;  5DM7 0;  1UPM C;  4LQ4 A;  1AA1 C;  3FPN A;  4QGB A;  3U56 A;  1GK8 I;  4F0K B;  3RUB S;  1RXO C;  3AXM S;  3AXK S;  8RUC I;  1RCO C;  1I2A A;  1IWA B;  4F0M B;  3ZQJ A;  3TG8 A;  1DWU A;  1AD2 A;  1IR2 1;  1EJ7 S;  1RBO C;  1RSC I;  4DFC B;  2HW8 A;  1U63 A;  1WDD S;  2V68 I;  4HHH S;  1RCX C; 
#chains in the Genus database with same CATH homology
 1SVD M;  1UWA C;  3ZXW B;  1BWV S;  1RBL I;  2VDH I;  4RUB S;  1RLC S;  1AUS S;  2VDI I;  1UW9 C;  1UZD C;  2V67 I;  2V63 I;  2YBV B;  2V6A I;  1IR1 S;  1RLD S;  4F0H B;  1UPP I;  1BXN I;  2V69 I;  1UZH C;  4MKV S;  1UPM C;  1AA1 C;  1GK8 I;  4F0K B;  3RUB S;  1RXO C;  3AXM S;  3AXK S;  8RUC I;  1RCO C;  4F0M B;  1IWA B;  1IR2 1;  1EJ7 S;  1RBO C;  1RSC I;  1WDD S;  2V68 I;  4HHH S;  1RCX C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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8RUCI

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations