1B24A

I-dmoi, intron-encoded endonuclease
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
172
structure length
172
Chain Sequence
VSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the thermostable archaeal intron-encoded endonuclease I-DmoI.
pubmed doi rcsb
molecule tags Intron-encoded
source organism Desulfurococcus mobilis
molecule keywords PROTEIN (I-DMOI)
total genus 46
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 1998-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1b24A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1b24A02
1M5XA 4Z1ZA 3EH8A 4UN9G 3UVFA 4UNAA 1AF5A 2CW7A 3MXAA 2QOJZ 5A0MB 4AABA 3R7PA 2VBLB 2XE0B 4AADA 1UM2A 2I3QA 4AAFA 1T9JA 4UNCA 4UN7A 3E54A 2DCHX 1LWTA 3C0WA 3OOLA 4YHXA 5E5SA 1G9YA 5A72A 3FD2A 4UN9A 1JVAA 3C0XA 3MX9A 4Z1XA 4D6OA 2VBJA 2FLDA 2VBNA 2O7MA 4YITA 4LOXA 5A74A 4D6NA 2VBOA 1B24A 4UN8G 1DFAA 1U0DA 1N3EA 4AQUA 4LQ0A 4AQXA 2VBJB 2VBNB 4YISA 1R7MA 5A77A 1LWSA 1G9ZA 1EF0A 5A0WA 2VBOB 5A0MA 4AAEA 4EFJA 1N3FA 1MOWA 1U0CA 4UT0A 3HYJA 5A78A 5E63A 5AKFA 4UN8A 1P8KZ 2CW8A 3MXBA 4UNBA 1VDEA 5E67A 3HYIA 5E5OA 2EX5A 5AKMA 3QQYA 5AK9A 1BP7A 2AB5A 4AAGA 1T9IA 3MISA 3KO2A 3OORA 1DQ3A 3MIPA 2VS7A 4Z20A 4UN7G 2VBLA 3MXBB 5AKNA 2XE0A 2I3PA 2VS8A
chains in the Genus database with same CATH superfamily
1M5XA 4Z1ZA 3EH8A 4UN9G 3UVFA 4UNAA 1AF5A 2CW7A 3MXAA 2QOJZ 5A0MB 4AABA 3R7PA 2VBLB 2XE0B 4AADA 1UM2A 2I3QA 4AAFA 1T9JA 4UNCA 4KZSA 4UN7A 3E54A 2DCHX 1LWTA 3C0WA 3OOLA 4YHXA 5E5SA 1G9YA 5A72A 3FD2A 4UN9A 1JVAA 3C0XA 3MX9A 4Z1XA 4D6OA 2VBJA 2FLDA 2VBNA 2O7MA 4YITA 4LOXA 5A74A 4D6NA 2VBOA 1B24A 4UN8G 1DFAA 1U0DA 1N3EA 4AQUA 4LQ0A 4AQXA 2VBJB 2VBNB 4YISA 1R7MA 5A77A 1LWSA 1G9ZA 1EF0A 5A0WA 2VBOB 5A0MA 4AAEA 4EFJA 1N3FA 1MOWA 1U0CA 4UT0A 3HYJA 5A78A 5E63A 5AKFA 4UN8A 1P8KZ 2CW8A 3MXBA 4UNBA 1VDEA 5E67A 3HYIA 5E5OA 2EX5A 5AKMA 3QQYA 5AK9A 1BP7A 2AB5A 4AAGA 1T9IA 3MISA 2F4LA 3KO2A 3OORA 1DQ3A 3MIPA 2VS7A 4Z20A 4UN7G 2VBLA 3MXBB 5AKNA 2XE0A 2I3PA 2VS8A
chains in the Genus database with same CATH topology
1M5XA 4Z1ZA 3EH8A 4UN9G 3UVFA 4UNAA 1AF5A 2CW7A 3MXAA 2QOJZ 5A0MB 4AABA 3R7PA 2VBLB 2XE0B 4AADA 1UM2A 2I3QA 4AAFA 1T9JA 4UNCA 4UN7A 3E54A 2DCHX 1LWTA 3C0WA 3OOLA 4YHXA 5E5SA 1G9YA 5A72A 3FD2A 4UN9A 1JVAA 3C0XA 3MX9A 4Z1XA 4D6OA 2VBJA 2FLDA 2VBNA 2O7MA 4YITA 4LOXA 5A74A 4D6NA 2VBOA 1B24A 4UN8G 1DFAA 1U0DA 1N3EA 4AQUA 4LQ0A 4AQXA 2VBJB 2VBNB 4YISA 1R7MA 5A77A 1LWSA 1G9ZA 1EF0A 5A0WA 2VBOB 5A0MA 4AAEA 4EFJA 1N3FA 1MOWA 1U0CA 4UT0A 3HYJA 5A78A 5E63A 5AKFA 4UN8A 1P8KZ 2CW8A 3MXBA 4UNBA 1VDEA 5E67A 3HYIA 5E5OA 2EX5A 5AKMA 3QQYA 5AK9A 1BP7A 2AB5A 4AAGA 1T9IA 3MISA 3KO2A 3OORA 1DQ3A 3MIPA 2VS7A 4Z20A 4UN7G 2VBLA 3MXBB 5AKNA 2XE0A 2I3PA 2VS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1M5X A;  4Z1Z A;  3EH8 A;  4UN9 G;  3UVF A;  4UNA A;  1AF5 A;  2CW7 A;  3MXA A;  2QOJ Z;  5A0M B;  4AAB A;  3R7P A;  2VBL B;  2XE0 B;  4AAD A;  1UM2 A;  2I3Q A;  4AAF A;  1T9J A;  4UNC A;  4UN7 A;  3E54 A;  2DCH X;  1LWT A;  3C0W A;  3OOL A;  4YHX A;  5E5S A;  1G9Y A;  5A72 A;  3FD2 A;  4UN9 A;  1JVA A;  3C0X A;  3MX9 A;  4Z1X A;  4D6O A;  2VBJ A;  2FLD A;  2VBN A;  2O7M A;  4YIT A;  4LOX A;  5A74 A;  4D6N A;  2VBO A;  1B24 A;  4UN8 G;  1DFA A;  1U0D A;  1N3E A;  4AQU A;  4LQ0 A;  4AQX A;  2VBJ B;  2VBN B;  4YIS A;  1R7M A;  5A77 A;  1LWS A;  1G9Z A;  1EF0 A;  5A0W A;  2VBO B;  5A0M A;  4AAE A;  4EFJ A;  1N3F A;  1MOW A;  1U0C A;  4UT0 A;  3HYJ A;  5A78 A;  5E63 A;  5AKF A;  4UN8 A;  1P8K Z;  2CW8 A;  3MXB A;  4UNB A;  1VDE A;  5E67 A;  3HYI A;  5E5O A;  2EX5 A;  5AKM A;  3QQY A;  5AK9 A;  1BP7 A;  2AB5 A;  4AAG A;  1T9I A;  3MIS A;  3KO2 A;  3OOR A;  1DQ3 A;  3MIP A;  2VS7 A;  4Z20 A;  4UN7 G;  2VBL A;  3MXB B;  5AKN A;  2XE0 A;  2I3P A;  2VS8 A; 
#chains in the Genus database with same CATH topology
 1M5X A;  4Z1Z A;  3EH8 A;  4UN9 G;  3UVF A;  4UNA A;  1AF5 A;  2CW7 A;  3MXA A;  2QOJ Z;  5A0M B;  4AAB A;  3R7P A;  2VBL B;  2XE0 B;  4AAD A;  1UM2 A;  2I3Q A;  4AAF A;  1T9J A;  4UNC A;  4KZS A;  4UN7 A;  3E54 A;  2DCH X;  1LWT A;  3C0W A;  3OOL A;  4YHX A;  5E5S A;  1G9Y A;  5A72 A;  3FD2 A;  4UN9 A;  1JVA A;  3C0X A;  3MX9 A;  4Z1X A;  4D6O A;  2VBJ A;  2FLD A;  2VBN A;  2O7M A;  4YIT A;  4LOX A;  5A74 A;  4D6N A;  2VBO A;  1B24 A;  4UN8 G;  1DFA A;  1U0D A;  1N3E A;  4AQU A;  4LQ0 A;  4AQX A;  2VBJ B;  2VBN B;  4YIS A;  1R7M A;  5A77 A;  1LWS A;  1G9Z A;  1EF0 A;  5A0W A;  2VBO B;  5A0M A;  4AAE A;  4EFJ A;  1N3F A;  1MOW A;  1U0C A;  4UT0 A;  3HYJ A;  5A78 A;  5E63 A;  5AKF A;  4UN8 A;  1P8K Z;  2CW8 A;  3MXB A;  4UNB A;  1VDE A;  5E67 A;  3HYI A;  5E5O A;  2EX5 A;  5AKM A;  3QQY A;  5AK9 A;  1BP7 A;  2AB5 A;  4AAG A;  1T9I A;  3MIS A;  2F4L A;  3KO2 A;  3OOR A;  1DQ3 A;  3MIP A;  2VS7 A;  4Z20 A;  4UN7 G;  2VBL A;  3MXB B;  5AKN A;  2XE0 A;  2I3P A;  2VS8 A; 
#chains in the Genus database with same CATH homology
 1M5X A;  4Z1Z A;  3EH8 A;  4UN9 G;  3UVF A;  4UNA A;  1AF5 A;  2CW7 A;  3MXA A;  2QOJ Z;  5A0M B;  4AAB A;  3R7P A;  2VBL B;  2XE0 B;  4AAD A;  1UM2 A;  2I3Q A;  4AAF A;  1T9J A;  4UNC A;  4UN7 A;  3E54 A;  2DCH X;  1LWT A;  3C0W A;  3OOL A;  4YHX A;  5E5S A;  1G9Y A;  5A72 A;  3FD2 A;  4UN9 A;  1JVA A;  3C0X A;  3MX9 A;  4Z1X A;  4D6O A;  2VBJ A;  2FLD A;  2VBN A;  2O7M A;  4YIT A;  4LOX A;  5A74 A;  4D6N A;  2VBO A;  1B24 A;  4UN8 G;  1DFA A;  1U0D A;  1N3E A;  4AQU A;  4LQ0 A;  4AQX A;  2VBJ B;  2VBN B;  4YIS A;  1R7M A;  5A77 A;  1LWS A;  1G9Z A;  1EF0 A;  5A0W A;  2VBO B;  5A0M A;  4AAE A;  4EFJ A;  1N3F A;  1MOW A;  1U0C A;  4UT0 A;  3HYJ A;  5A78 A;  5E63 A;  5AKF A;  4UN8 A;  1P8K Z;  2CW8 A;  3MXB A;  4UNB A;  1VDE A;  5E67 A;  3HYI A;  5E5O A;  2EX5 A;  5AKM A;  3QQY A;  5AK9 A;  1BP7 A;  2AB5 A;  4AAG A;  1T9I A;  3MIS A;  3KO2 A;  3OOR A;  1DQ3 A;  3MIP A;  2VS7 A;  4Z20 A;  4UN7 G;  2VBL A;  3MXB B;  5AKN A;  2XE0 A;  2I3P A;  2VS8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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