1B24A

I-dmoi, intron-encoded endonuclease
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
172
structure length
172
Chain Sequence
VSGISAYLLGLIIGDGGLYKLKYKGNRSEYRVVITQKSENLIKQHIAPLMQFLIDELNVKSKIQIVKGDTRYELRVSSKKLYYYFANMLERIRLFNMREQIAFIKGLYVAEGDKTLKRLRIWNKNKALLEIVSRWLNNLGVRNTIHLDDHRHGVYVLNISLRDRIKFVHTIL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the thermostable archaeal intron-encoded endonuclease I-DmoI.
pubmed doi rcsb
molecule tags Intron-encoded
source organism Desulfurococcus mobilis
molecule keywords PROTEIN (I-DMOI)
total genus 46
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 1998-12-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14528 LAGLIDADG_3 LAGLIDADG-like domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1b24A01
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1b24A02
4UN9A 4D6OA 3OOLA 4Z1XA 3HYIA 1EF0A 1VDEA 5A74A 3QQYA 4LOXA 4Z20A 1U0DA 4Z1ZA 4UN7G 4AAGA 2VBLA 3EH8A 2CW7A 5A0MA 3MX9A 5AKFA 4UNBA 4AQUA 2DCHX 2XE0B 5E63A 3MXBA 1JVAA 1DQ3A 4EFJA 3C0XA 1U0CA 4AQXA 1G9YA 4YISA 2VBOA 1R7MA 2VS7A 3FD2A 1AF5A 4AADA 2EX5A 4YITA 2AB5A 2CW8A 4UT0A 5A78A 2VBLB 3MIPA 5A77A 5A0MB 1MOWA 1P8KZ 3C0WA 5E5SA 3E54A 4UN8G 3MXBB 2VBJA 1LWSA 4LQ0A 2QOJZ 2VBOB 5E5OA 1LWTA 4YHXA 5E67A 2I3PA 3MISA 4UN9G 2FLDA 4AAFA 2VBNA 5AKMA 1N3FA 3KO2A 4UN7A 4UNAA 1T9JA 1N3EA 4D6NA 1B24A 3MXAA 5A0WA 1G9ZA 4AABA 5A72A 2VBJB 1BP7A 1T9IA 3OORA 2O7MA 4UN8A 3UVFA 3HYJA 4UNCA 2XE0A 3R7PA 5AKNA 2VS8A 4AAEA 1UM2A 1DFAA 2I3QA 5AK9A 1M5XA 2VBNB
chains in the Genus database with same CATH superfamily
4UN9A 4D6OA 3OOLA 4Z1XA 3HYIA 1EF0A 1VDEA 5A74A 3QQYA 4LOXA 4Z20A 1U0DA 4Z1ZA 4UN7G 4AAGA 2VBLA 3EH8A 2CW7A 5A0MA 3MX9A 5AKFA 4UNBA 4AQUA 2DCHX 2XE0B 5E63A 3MXBA 1JVAA 1DQ3A 4EFJA 3C0XA 1U0CA 4AQXA 1G9YA 4YISA 2VBOA 1R7MA 2VS7A 3FD2A 1AF5A 4AADA 2EX5A 4YITA 2AB5A 2CW8A 4UT0A 5A78A 2VBLB 3MIPA 5A77A 5A0MB 1MOWA 1P8KZ 3C0WA 5E5SA 3E54A 4UN8G 3MXBB 2VBJA 1LWSA 4LQ0A 2QOJZ 2VBOB 5E5OA 1LWTA 4YHXA 5E67A 2I3PA 3MISA 4UN9G 2FLDA 2F4LA 4AAFA 2VBNA 5AKMA 1N3FA 3KO2A 4UN7A 4UNAA 1T9JA 1N3EA 4D6NA 1B24A 3MXAA 5A0WA 1G9ZA 4AABA 5A72A 2VBJB 1BP7A 1T9IA 3OORA 2O7MA 4UN8A 3UVFA 3HYJA 4UNCA 4KZSA 2XE0A 3R7PA 5AKNA 2VS8A 4AAEA 1UM2A 1DFAA 2I3QA 5AK9A 1M5XA 2VBNB
chains in the Genus database with same CATH topology
4UN9A 4D6OA 3OOLA 4Z1XA 3HYIA 1EF0A 1VDEA 5A74A 3QQYA 4LOXA 4Z20A 1U0DA 4Z1ZA 4UN7G 4AAGA 2VBLA 3EH8A 2CW7A 5A0MA 3MX9A 5AKFA 4UNBA 4AQUA 2DCHX 2XE0B 5E63A 3MXBA 1JVAA 1DQ3A 4EFJA 3C0XA 1U0CA 4AQXA 1G9YA 4YISA 2VBOA 1R7MA 2VS7A 3FD2A 1AF5A 4AADA 2EX5A 4YITA 2AB5A 2CW8A 4UT0A 5A78A 2VBLB 3MIPA 5A77A 5A0MB 1MOWA 1P8KZ 3C0WA 5E5SA 3E54A 4UN8G 3MXBB 2VBJA 1LWSA 4LQ0A 2QOJZ 2VBOB 5E5OA 1LWTA 4YHXA 5E67A 2I3PA 3MISA 4UN9G 2FLDA 4AAFA 2VBNA 5AKMA 1N3FA 3KO2A 4UN7A 4UNAA 1T9JA 1N3EA 4D6NA 1B24A 3MXAA 5A0WA 1G9ZA 4AABA 5A72A 2VBJB 1BP7A 1T9IA 3OORA 2O7MA 4UN8A 3UVFA 3HYJA 4UNCA 2XE0A 3R7PA 5AKNA 2VS8A 4AAEA 1UM2A 1DFAA 2I3QA 5AK9A 1M5XA 2VBNB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UN9 A;  4D6O A;  3OOL A;  4Z1X A;  3HYI A;  1EF0 A;  1VDE A;  5A74 A;  3QQY A;  4LOX A;  4Z20 A;  1U0D A;  4Z1Z A;  4UN7 G;  4AAG A;  2VBL A;  3EH8 A;  2CW7 A;  5A0M A;  3MX9 A;  5AKF A;  4UNB A;  4AQU A;  2DCH X;  2XE0 B;  5E63 A;  3MXB A;  1JVA A;  1DQ3 A;  4EFJ A;  3C0X A;  1U0C A;  4AQX A;  1G9Y A;  4YIS A;  2VBO A;  1R7M A;  2VS7 A;  3FD2 A;  1AF5 A;  4AAD A;  2EX5 A;  4YIT A;  2AB5 A;  2CW8 A;  4UT0 A;  5A78 A;  2VBL B;  3MIP A;  5A77 A;  5A0M B;  1MOW A;  1P8K Z;  3C0W A;  5E5S A;  3E54 A;  4UN8 G;  3MXB B;  2VBJ A;  1LWS A;  4LQ0 A;  2QOJ Z;  2VBO B;  5E5O A;  1LWT A;  4YHX A;  5E67 A;  2I3P A;  3MIS A;  4UN9 G;  2FLD A;  4AAF A;  2VBN A;  5AKM A;  1N3F A;  3KO2 A;  4UN7 A;  4UNA A;  1T9J A;  1N3E A;  4D6N A;  1B24 A;  3MXA A;  5A0W A;  1G9Z A;  4AAB A;  5A72 A;  2VBJ B;  1BP7 A;  1T9I A;  3OOR A;  2O7M A;  4UN8 A;  3UVF A;  3HYJ A;  4UNC A;  2XE0 A;  3R7P A;  5AKN A;  2VS8 A;  4AAE A;  1UM2 A;  1DFA A;  2I3Q A;  5AK9 A;  1M5X A;  2VBN B; 
#chains in the Genus database with same CATH topology
 4UN9 A;  4D6O A;  3OOL A;  4Z1X A;  3HYI A;  1EF0 A;  1VDE A;  5A74 A;  3QQY A;  4LOX A;  4Z20 A;  1U0D A;  4Z1Z A;  4UN7 G;  4AAG A;  2VBL A;  3EH8 A;  2CW7 A;  5A0M A;  3MX9 A;  5AKF A;  4UNB A;  4AQU A;  2DCH X;  2XE0 B;  5E63 A;  3MXB A;  1JVA A;  1DQ3 A;  4EFJ A;  3C0X A;  1U0C A;  4AQX A;  1G9Y A;  4YIS A;  2VBO A;  1R7M A;  2VS7 A;  3FD2 A;  1AF5 A;  4AAD A;  2EX5 A;  4YIT A;  2AB5 A;  2CW8 A;  4UT0 A;  5A78 A;  2VBL B;  3MIP A;  5A77 A;  5A0M B;  1MOW A;  1P8K Z;  3C0W A;  5E5S A;  3E54 A;  4UN8 G;  3MXB B;  2VBJ A;  1LWS A;  4LQ0 A;  2QOJ Z;  2VBO B;  5E5O A;  1LWT A;  4YHX A;  5E67 A;  2I3P A;  3MIS A;  4UN9 G;  2FLD A;  2F4L A;  4AAF A;  2VBN A;  5AKM A;  1N3F A;  3KO2 A;  4UN7 A;  4UNA A;  1T9J A;  1N3E A;  4D6N A;  1B24 A;  3MXA A;  5A0W A;  1G9Z A;  4AAB A;  5A72 A;  2VBJ B;  1BP7 A;  1T9I A;  3OOR A;  2O7M A;  4UN8 A;  3UVF A;  3HYJ A;  4UNC A;  4KZS A;  2XE0 A;  3R7P A;  5AKN A;  2VS8 A;  4AAE A;  1UM2 A;  1DFA A;  2I3Q A;  5AK9 A;  1M5X A;  2VBN B; 
#chains in the Genus database with same CATH homology
 4UN9 A;  4D6O A;  3OOL A;  4Z1X A;  3HYI A;  1EF0 A;  1VDE A;  5A74 A;  3QQY A;  4LOX A;  4Z20 A;  1U0D A;  4Z1Z A;  4UN7 G;  4AAG A;  2VBL A;  3EH8 A;  2CW7 A;  5A0M A;  3MX9 A;  5AKF A;  4UNB A;  4AQU A;  2DCH X;  2XE0 B;  5E63 A;  3MXB A;  1JVA A;  1DQ3 A;  4EFJ A;  3C0X A;  1U0C A;  4AQX A;  1G9Y A;  4YIS A;  2VBO A;  1R7M A;  2VS7 A;  3FD2 A;  1AF5 A;  4AAD A;  2EX5 A;  4YIT A;  2AB5 A;  2CW8 A;  4UT0 A;  5A78 A;  2VBL B;  3MIP A;  5A77 A;  5A0M B;  1MOW A;  1P8K Z;  3C0W A;  5E5S A;  3E54 A;  4UN8 G;  3MXB B;  2VBJ A;  1LWS A;  4LQ0 A;  2QOJ Z;  2VBO B;  5E5O A;  1LWT A;  4YHX A;  5E67 A;  2I3P A;  3MIS A;  4UN9 G;  2FLD A;  4AAF A;  2VBN A;  5AKM A;  1N3F A;  3KO2 A;  4UN7 A;  4UNA A;  1T9J A;  1N3E A;  4D6N A;  1B24 A;  3MXA A;  5A0W A;  1G9Z A;  4AAB A;  5A72 A;  2VBJ B;  1BP7 A;  1T9I A;  3OOR A;  2O7M A;  4UN8 A;  3UVF A;  3HYJ A;  4UNC A;  2XE0 A;  3R7P A;  5AKN A;  2VS8 A;  4AAE A;  1UM2 A;  1DFA A;  2I3Q A;  5AK9 A;  1M5X A;  2VBN B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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