1BP7A

Group i mobile intron endonuclease i-crei complexed with homing site dna
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title DNA recognition and cleavage by the LAGLIDADG homing endonuclease I-CreI.
pubmed doi rcsb
molecule tags Transcription/dna
source organism Chlamydomonas reinhardtii
molecule keywords DNA (5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*C
total genus 42
structure length 152
sequence length 152
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 1998-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1bp7A00
3MX9A 5AKFA 4UNBA 5E5OA 3MIPA 2CW7A 1LWTA 4Z20A 2VBOB 3MXBB 2XE0A 4AAGA 1EF0A 5AK9A 4D6NA 5AKNA 5E5SA 4UN7A 3HYJA 1AF5A 3C0XA 2VBLB 2VS8A 5E63A 4YHXA 2I3QA 5A74A 4UN9G 5A0MA 2FLDA 3OORA 1T9IA 2DCHX 4YISA 4AQUA 3QQYA 5AKMA 2I3PA 4YITA 4UT0A 2VBJB 3FD2A 1N3FA 1T9JA 4D6OA 3E54A 3MXAA 3C0WA 1R7MA 4UN8G 5E67A 2VBNB 1B24A 2AB5A 4LOXA 4AAEA 2VBOA 5A0MB 1U0DA 1U0CA 1DQ3A 5A0WA 2XE0B 4UN8A 4AABA 1MOWA 3KO2A 1BP7A 3EH8A 4AADA 1UM2A 2EX5A 4UN9A 4AQXA 4UN7G 1JVAA 2QOJZ 3OOLA 3UVFA 1LWSA 4LQ0A 4UNCA 1VDEA 5A72A 3MXBA 4UNAA 2VBJA 4AAFA 1G9YA 1M5XA 5A77A 3HYIA 4Z1ZA 2CW8A 2VS7A 3MISA 2VBLA 1DFAA 2O7MA 3R7PA 1G9ZA 2VBNA 4Z1XA 5A78A 4EFJA 1P8KZ 1N3EA
chains in the Genus database with same CATH superfamily
3MX9A 5AKFA 4UNBA 5E5OA 3MIPA 2CW7A 1LWTA 4Z20A 2VBOB 3MXBB 2XE0A 4AAGA 1EF0A 5AK9A 4D6NA 5AKNA 2F4LA 5E5SA 4UN7A 3HYJA 1AF5A 3C0XA 2VBLB 2VS8A 5E63A 4YHXA 2I3QA 5A74A 4UN9G 5A0MA 2FLDA 3OORA 1T9IA 2DCHX 4YISA 4AQUA 3QQYA 5AKMA 2I3PA 4YITA 4UT0A 2VBJB 3FD2A 1N3FA 1T9JA 4D6OA 3E54A 3MXAA 3C0WA 1R7MA 4UN8G 5E67A 2VBNB 1B24A 2AB5A 4LOXA 4AAEA 2VBOA 5A0MB 1U0DA 1U0CA 1DQ3A 5A0WA 2XE0B 4UN8A 4AABA 1MOWA 3KO2A 1BP7A 3EH8A 4AADA 1UM2A 2EX5A 4UN9A 4AQXA 4UN7G 1JVAA 2QOJZ 3OOLA 3UVFA 1LWSA 4LQ0A 4UNCA 1VDEA 5A72A 3MXBA 4UNAA 2VBJA 4AAFA 1G9YA 1M5XA 4KZSA 5A77A 3HYIA 4Z1ZA 2CW8A 2VS7A 3MISA 2VBLA 1DFAA 2O7MA 3R7PA 1G9ZA 2VBNA 4Z1XA 5A78A 4EFJA 1P8KZ 1N3EA
chains in the Genus database with same CATH topology
3MX9A 5AKFA 4UNBA 5E5OA 3MIPA 2CW7A 1LWTA 4Z20A 2VBOB 3MXBB 2XE0A 4AAGA 1EF0A 5AK9A 4D6NA 5AKNA 5E5SA 4UN7A 3HYJA 1AF5A 3C0XA 2VBLB 2VS8A 5E63A 4YHXA 2I3QA 5A74A 4UN9G 5A0MA 2FLDA 3OORA 1T9IA 2DCHX 4YISA 4AQUA 3QQYA 5AKMA 2I3PA 4YITA 4UT0A 2VBJB 3FD2A 1N3FA 1T9JA 4D6OA 3E54A 3MXAA 3C0WA 1R7MA 4UN8G 5E67A 2VBNB 1B24A 2AB5A 4LOXA 4AAEA 2VBOA 5A0MB 1U0DA 1U0CA 1DQ3A 5A0WA 2XE0B 4UN8A 4AABA 1MOWA 3KO2A 1BP7A 3EH8A 4AADA 1UM2A 2EX5A 4UN9A 4AQXA 4UN7G 1JVAA 2QOJZ 3OOLA 3UVFA 1LWSA 4LQ0A 4UNCA 1VDEA 5A72A 3MXBA 4UNAA 2VBJA 4AAFA 1G9YA 1M5XA 5A77A 3HYIA 4Z1ZA 2CW8A 2VS7A 3MISA 2VBLA 1DFAA 2O7MA 3R7PA 1G9ZA 2VBNA 4Z1XA 5A78A 4EFJA 1P8KZ 1N3EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MX9 A;  5AKF A;  4UNB A;  5E5O A;  3MIP A;  2CW7 A;  1LWT A;  4Z20 A;  2VBO B;  3MXB B;  2XE0 A;  4AAG A;  1EF0 A;  5AK9 A;  4D6N A;  5AKN A;  5E5S A;  4UN7 A;  3HYJ A;  1AF5 A;  3C0X A;  2VBL B;  2VS8 A;  5E63 A;  4YHX A;  2I3Q A;  5A74 A;  4UN9 G;  5A0M A;  2FLD A;  3OOR A;  1T9I A;  2DCH X;  4YIS A;  4AQU A;  3QQY A;  5AKM A;  2I3P A;  4YIT A;  4UT0 A;  2VBJ B;  3FD2 A;  1N3F A;  1T9J A;  4D6O A;  3E54 A;  3MXA A;  3C0W A;  1R7M A;  4UN8 G;  5E67 A;  2VBN B;  1B24 A;  2AB5 A;  4LOX A;  4AAE A;  2VBO A;  5A0M B;  1U0D A;  1U0C A;  1DQ3 A;  5A0W A;  2XE0 B;  4UN8 A;  4AAB A;  1MOW A;  3KO2 A;  1BP7 A;  3EH8 A;  4AAD A;  1UM2 A;  2EX5 A;  4UN9 A;  4AQX A;  4UN7 G;  1JVA A;  2QOJ Z;  3OOL A;  3UVF A;  1LWS A;  4LQ0 A;  4UNC A;  1VDE A;  5A72 A;  3MXB A;  4UNA A;  2VBJ A;  4AAF A;  1G9Y A;  1M5X A;  5A77 A;  3HYI A;  4Z1Z A;  2CW8 A;  2VS7 A;  3MIS A;  2VBL A;  1DFA A;  2O7M A;  3R7P A;  1G9Z A;  2VBN A;  4Z1X A;  5A78 A;  4EFJ A;  1P8K Z;  1N3E A; 
#chains in the Genus database with same CATH topology
 3MX9 A;  5AKF A;  4UNB A;  5E5O A;  3MIP A;  2CW7 A;  1LWT A;  4Z20 A;  2VBO B;  3MXB B;  2XE0 A;  4AAG A;  1EF0 A;  5AK9 A;  4D6N A;  5AKN A;  2F4L A;  5E5S A;  4UN7 A;  3HYJ A;  1AF5 A;  3C0X A;  2VBL B;  2VS8 A;  5E63 A;  4YHX A;  2I3Q A;  5A74 A;  4UN9 G;  5A0M A;  2FLD A;  3OOR A;  1T9I A;  2DCH X;  4YIS A;  4AQU A;  3QQY A;  5AKM A;  2I3P A;  4YIT A;  4UT0 A;  2VBJ B;  3FD2 A;  1N3F A;  1T9J A;  4D6O A;  3E54 A;  3MXA A;  3C0W A;  1R7M A;  4UN8 G;  5E67 A;  2VBN B;  1B24 A;  2AB5 A;  4LOX A;  4AAE A;  2VBO A;  5A0M B;  1U0D A;  1U0C A;  1DQ3 A;  5A0W A;  2XE0 B;  4UN8 A;  4AAB A;  1MOW A;  3KO2 A;  1BP7 A;  3EH8 A;  4AAD A;  1UM2 A;  2EX5 A;  4UN9 A;  4AQX A;  4UN7 G;  1JVA A;  2QOJ Z;  3OOL A;  3UVF A;  1LWS A;  4LQ0 A;  4UNC A;  1VDE A;  5A72 A;  3MXB A;  4UNA A;  2VBJ A;  4AAF A;  1G9Y A;  1M5X A;  4KZS A;  5A77 A;  3HYI A;  4Z1Z A;  2CW8 A;  2VS7 A;  3MIS A;  2VBL A;  1DFA A;  2O7M A;  3R7P A;  1G9Z A;  2VBN A;  4Z1X A;  5A78 A;  4EFJ A;  1P8K Z;  1N3E A; 
#chains in the Genus database with same CATH homology
 3MX9 A;  5AKF A;  4UNB A;  5E5O A;  3MIP A;  2CW7 A;  1LWT A;  4Z20 A;  2VBO B;  3MXB B;  2XE0 A;  4AAG A;  1EF0 A;  5AK9 A;  4D6N A;  5AKN A;  5E5S A;  4UN7 A;  3HYJ A;  1AF5 A;  3C0X A;  2VBL B;  2VS8 A;  5E63 A;  4YHX A;  2I3Q A;  5A74 A;  4UN9 G;  5A0M A;  2FLD A;  3OOR A;  1T9I A;  2DCH X;  4YIS A;  4AQU A;  3QQY A;  5AKM A;  2I3P A;  4YIT A;  4UT0 A;  2VBJ B;  3FD2 A;  1N3F A;  1T9J A;  4D6O A;  3E54 A;  3MXA A;  3C0W A;  1R7M A;  4UN8 G;  5E67 A;  2VBN B;  1B24 A;  2AB5 A;  4LOX A;  4AAE A;  2VBO A;  5A0M B;  1U0D A;  1U0C A;  1DQ3 A;  5A0W A;  2XE0 B;  4UN8 A;  4AAB A;  1MOW A;  3KO2 A;  1BP7 A;  3EH8 A;  4AAD A;  1UM2 A;  2EX5 A;  4UN9 A;  4AQX A;  4UN7 G;  1JVA A;  2QOJ Z;  3OOL A;  3UVF A;  1LWS A;  4LQ0 A;  4UNC A;  1VDE A;  5A72 A;  3MXB A;  4UNA A;  2VBJ A;  4AAF A;  1G9Y A;  1M5X A;  5A77 A;  3HYI A;  4Z1Z A;  2CW8 A;  2VS7 A;  3MIS A;  2VBL A;  1DFA A;  2O7M A;  3R7P A;  1G9Z A;  2VBN A;  4Z1X A;  5A78 A;  4EFJ A;  1P8K Z;  1N3E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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