1EO2A

Crystal structure of acinetobacter sp. adp1 protocatechuate 3,4-dioxygenase
Total Genus 42
204060801001201401601800510152025303540
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
202
structure length
202
Chain Sequence
ELKETPSQTGGPYVHIGLLPKQANIEVFEHNLDNNLVQDNTQGQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGRKGSTQAPHISLIIFARGINIGLHTRVYFDDEAEANAKDPVLNSIEWATRRQTLVAKREERDGEVVYRFDIRIQGENETVFFDI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTII1 (132-135)AH1 (16-21)S3 (92-96)3H1 (23-26)O1 (28-30)TVIII1 (31-34)S1 (48-56)TII2 (191-194)TIV4 (99-102)TIV1 (63-66)S2 (66-72)S5 (114-115)TI3 (74-77)O2 (79-81)TI4 (81-84)TIV3 (98-101)S4 (103-109)S7 (125-132)AH3 (156-160)S8 (135-145)TI5 (145-148)AH2 (148-154)S10 (180-188)TVIII3 (161-164)3H2 (164-170)S9 (171-177)TIV6 (176-179)TIV5 (116-119)S6 (121-122)TI1 (41-44)TI2 (57-60)Updating...
connected with : NaN
publication title Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags Oxidoreductase
source organism Acinetobacter sp.
total genus 42
structure length 202
sequence length 202
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2000-03-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 1eo2A00
2XSRA 2BUXB 1YKNB 2BUQA 1YKOA 3PCHA 3MV6A 2BOYA 3PCGM 3PCMM 4WHRF 1YKNA 1TMXA 1EO9B 4WHOD 3PCDA 3PCJA 2BUUA 3MI5A 3HHXA 3I51A 3O6JA 1EOBB 2XSUA 2BV0B 1DMHA 3PCGA 3PCMA 1YKPA 1DLMA 3PCKM 1EOBA 3MFLM 4WHQB 2BUTB 2BUVA 4WHQA 2AZQA 2BUTA 4ILTA 3PCLM 1YKKB 3LMXM 3PCBM 3PCNM 2BUXA 3LKTM 1YKKA 3PCKA 3MFLA 3PCEM 3I4YA 2BUMB 4WHSB 3HKPA 1EO9A 3TH1A 4WHSA 3PCLA 3LMXA 3PCBA 3T63M 3PCNA 3PCEA 3PCAM 1EO2B 2BURB 2BV0A 2PCDM 3MI1M 4WHSD 3HJSA 2BUZB 1YKMB 4WHRB 3PCIM 3T63A 2BUZA 1YKMA 3PCAA 2PCDA 3MI1A 1EOCB 5TD3A 1DLQA 2BUMA 1EOCA 3HJ8A 4ILVA 2BUYB 3O5UA 3HGIA 3PCIA 1EOAB 3LKTA 2BUYA 3HJQA 1YKOB 3MI5M 3PCFM 3MV4M 1EO2A 2BURA 1YKLB 2BUWB 3N9TA 2BUUB 3HHYA 4WHPB 1YKLA 2BUWA 3LXVM 4WHRA 3PCCM 4WHPA 3O32A 3T67M 3PCFA 3MV4A 1YKPB 1S9AA 3I4VA 4WHOB 2XSVA 3PCHM 3MV6M 2BUVB 4WHOA 3PCDM 3LXVA 3O6RA 2BUQB 3PCCA 3PCJM 4WHPD 3T67A 1DLTA 1EOAA
chains in the Genus database with same CATH superfamily
2XSRA 2BUXB 1YKNB 2BUQA 1YKOA 3PCHA 3MV6A 2BOYA 3PCGM 3PCMM 4WHRF 1YKNA 1TMXA 1EO9B 4WHOD 3PCDA 3PCJA 2BUUA 3MI5A 3HHXA 3I51A 3O6JA 1EOBB 2XSUA 2BV0B 1DMHA 3PCGA 3PCMA 1YKPA 1DLMA 3PCKM 1EOBA 3MFLM 4WHQB 2BUTB 2BUVA 4WHQA 2AZQA 2BUTA 4ILTA 3PCLM 1YKKB 3LMXM 3PCBM 3PCNM 2BUXA 3LKTM 1YKKA 3PCKA 3MFLA 3PCEM 3I4YA 2BUMB 4WHSB 3HKPA 1EO9A 3TH1A 4WHSA 3PCLA 3LMXA 3PCBA 3T63M 3PCNA 3PCEA 3PCAM 1EO2B 2BURB 2BV0A 2PCDM 3MI1M 4WHSD 3HJSA 2BUZB 1YKMB 4WHRB 3PCIM 3T63A 2BUZA 1YKMA 3PCAA 2PCDA 3MI1A 1EOCB 5TD3A 1DLQA 2BUMA 1EOCA 3HJ8A 4ILVA 2BUYB 3O5UA 3HGIA 3PCIA 1EOAB 3LKTA 2BUYA 3HJQA 1YKOB 3MI5M 3PCFM 3MV4M 1EO2A 2BURA 1YKLB 2BUWB 3N9TA 2BUUB 3HHYA 4WHPB 1YKLA 2BUWA 3LXVM 4WHRA 3PCCM 4WHPA 3O32A 3T67M 3PCFA 3MV4A 1YKPB 1S9AA 3I4VA 4WHOB 2XSVA 3PCHM 3MV6M 2BUVB 4WHOA 3PCDM 3LXVA 3O6RA 2BUQB 3PCCA 3PCJM 4WHPD 3T67A 1DLTA 1EOAA
chains in the Genus database with same CATH topology
2XSRA 2BUXB 1YKNB 2BUQA 1YKOA 3PCHA 3MV6A 2BOYA 3PCGM 3PCMM 4WHRF 1YKNA 1TMXA 1EO9B 4WHOD 3PCDA 3PCJA 2BUUA 3MI5A 3HHXA 3I51A 3O6JA 1EOBB 2XSUA 2BV0B 1DMHA 3PCGA 3PCMA 1YKPA 1DLMA 3PCKM 1EOBA 3MFLM 4WHQB 2BUTB 2BUVA 4WHQA 2AZQA 2BUTA 4ILTA 3PCLM 1YKKB 3LMXM 3PCBM 3PCNM 2BUXA 3LKTM 1YKKA 3PCKA 3MFLA 3PCEM 3I4YA 2BUMB 4WHSB 3HKPA 1EO9A 3TH1A 4WHSA 3PCLA 3LMXA 3PCBA 3T63M 3PCNA 3PCEA 3PCAM 1EO2B 2BURB 2BV0A 2PCDM 3MI1M 4WHSD 3HJSA 2BUZB 1YKMB 4WHRB 3PCIM 3T63A 2BUZA 1YKMA 3PCAA 2PCDA 3MI1A 1EOCB 5TD3A 1DLQA 2BUMA 1EOCA 3HJ8A 4ILVA 2BUYB 3O5UA 3HGIA 3PCIA 1EOAB 3LKTA 2BUYA 3HJQA 1YKOB 3MI5M 3PCFM 3MV4M 1EO2A 2BURA 1YKLB 2BUWB 3N9TA 2BUUB 3HHYA 4WHPB 1YKLA 2BUWA 3LXVM 4WHRA 3PCCM 4WHPA 3O32A 3T67M 3PCFA 3MV4A 1YKPB 1S9AA 3I4VA 4WHOB 2XSVA 3PCHM 3MV6M 2BUVB 4WHOA 3PCDM 3LXVA 3O6RA 2BUQB 3PCCA 3PCJM 4WHPD 3T67A 1DLTA 1EOAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XSR A;  2BUX B;  1YKN B;  2BUQ A;  1YKO A;  3PCH A;  3MV6 A;  2BOY A;  3PCG M;  3PCM M;  4WHR F;  1YKN A;  1TMX A;  1EO9 B;  4WHO D;  3PCD A;  3PCJ A;  2BUU A;  3MI5 A;  3HHX A;  3I51 A;  3O6J A;  1EOB B;  2XSU A;  2BV0 B;  1DMH A;  3PCG A;  3PCM A;  1YKP A;  1DLM A;  3PCK M;  1EOB A;  3MFL M;  4WHQ B;  2BUT B;  2BUV A;  4WHQ A;  2AZQ A;  2BUT A;  4ILT A;  3PCL M;  1YKK B;  3LMX M;  3PCB M;  3PCN M;  2BUX A;  3LKT M;  1YKK A;  3PCK A;  3MFL A;  3PCE M;  3I4Y A;  2BUM B;  4WHS B;  3HKP A;  1EO9 A;  3TH1 A;  4WHS A;  3PCL A;  3LMX A;  3PCB A;  3T63 M;  3PCN A;  3PCE A;  3PCA M;  1EO2 B;  2BUR B;  2BV0 A;  2PCD M;  3MI1 M;  4WHS D;  3HJS A;  2BUZ B;  1YKM B;  4WHR B;  3PCI M;  3T63 A;  2BUZ A;  1YKM A;  3PCA A;  2PCD A;  3MI1 A;  1EOC B;  5TD3 A;  1DLQ A;  2BUM A;  1EOC A;  3HJ8 A;  4ILV A;  2BUY B;  3O5U A;  3HGI A;  3PCI A;  1EOA B;  3LKT A;  2BUY A;  3HJQ A;  1YKO B;  3MI5 M;  3PCF M;  3MV4 M;  1EO2 A;  2BUR A;  1YKL B;  2BUW B;  3N9T A;  2BUU B;  3HHY A;  4WHP B;  1YKL A;  2BUW A;  3LXV M;  4WHR A;  3PCC M;  4WHP A;  3O32 A;  3T67 M;  3PCF A;  3MV4 A;  1YKP B;  1S9A A;  3I4V A;  4WHO B;  2XSV A;  3PCH M;  3MV6 M;  2BUV B;  4WHO A;  3PCD M;  3LXV A;  3O6R A;  2BUQ B;  3PCC A;  3PCJ M;  4WHP D;  3T67 A;  1DLT A;  1EOA A; 
#chains in the Genus database with same CATH topology
 2XSR A;  2BUX B;  1YKN B;  2BUQ A;  1YKO A;  3PCH A;  3MV6 A;  2BOY A;  3PCG M;  3PCM M;  4WHR F;  1YKN A;  1TMX A;  1EO9 B;  4WHO D;  3PCD A;  3PCJ A;  2BUU A;  3MI5 A;  3HHX A;  3I51 A;  3O6J A;  1EOB B;  2XSU A;  2BV0 B;  1DMH A;  3PCG A;  3PCM A;  1YKP A;  1DLM A;  3PCK M;  1EOB A;  3MFL M;  4WHQ B;  2BUT B;  2BUV A;  4WHQ A;  2AZQ A;  2BUT A;  4ILT A;  3PCL M;  1YKK B;  3LMX M;  3PCB M;  3PCN M;  2BUX A;  3LKT M;  1YKK A;  3PCK A;  3MFL A;  3PCE M;  3I4Y A;  2BUM B;  4WHS B;  3HKP A;  1EO9 A;  3TH1 A;  4WHS A;  3PCL A;  3LMX A;  3PCB A;  3T63 M;  3PCN A;  3PCE A;  3PCA M;  1EO2 B;  2BUR B;  2BV0 A;  2PCD M;  3MI1 M;  4WHS D;  3HJS A;  2BUZ B;  1YKM B;  4WHR B;  3PCI M;  3T63 A;  2BUZ A;  1YKM A;  3PCA A;  2PCD A;  3MI1 A;  1EOC B;  5TD3 A;  1DLQ A;  2BUM A;  1EOC A;  3HJ8 A;  4ILV A;  2BUY B;  3O5U A;  3HGI A;  3PCI A;  1EOA B;  3LKT A;  2BUY A;  3HJQ A;  1YKO B;  3MI5 M;  3PCF M;  3MV4 M;  1EO2 A;  2BUR A;  1YKL B;  2BUW B;  3N9T A;  2BUU B;  3HHY A;  4WHP B;  1YKL A;  2BUW A;  3LXV M;  4WHR A;  3PCC M;  4WHP A;  3O32 A;  3T67 M;  3PCF A;  3MV4 A;  1YKP B;  1S9A A;  3I4V A;  4WHO B;  2XSV A;  3PCH M;  3MV6 M;  2BUV B;  4WHO A;  3PCD M;  3LXV A;  3O6R A;  2BUQ B;  3PCC A;  3PCJ M;  4WHP D;  3T67 A;  1DLT A;  1EOA A; 
#chains in the Genus database with same CATH homology
 2XSR A;  2BUX B;  1YKN B;  2BUQ A;  1YKO A;  3PCH A;  3MV6 A;  2BOY A;  3PCG M;  3PCM M;  4WHR F;  1YKN A;  1TMX A;  1EO9 B;  4WHO D;  3PCD A;  3PCJ A;  2BUU A;  3MI5 A;  3HHX A;  3I51 A;  3O6J A;  1EOB B;  2XSU A;  2BV0 B;  1DMH A;  3PCG A;  3PCM A;  1YKP A;  1DLM A;  3PCK M;  1EOB A;  3MFL M;  4WHQ B;  2BUT B;  2BUV A;  4WHQ A;  2AZQ A;  2BUT A;  4ILT A;  3PCL M;  1YKK B;  3LMX M;  3PCB M;  3PCN M;  2BUX A;  3LKT M;  1YKK A;  3PCK A;  3MFL A;  3PCE M;  3I4Y A;  2BUM B;  4WHS B;  3HKP A;  1EO9 A;  3TH1 A;  4WHS A;  3PCL A;  3LMX A;  3PCB A;  3T63 M;  3PCN A;  3PCE A;  3PCA M;  1EO2 B;  2BUR B;  2BV0 A;  2PCD M;  3MI1 M;  4WHS D;  3HJS A;  2BUZ B;  1YKM B;  4WHR B;  3PCI M;  3T63 A;  2BUZ A;  1YKM A;  3PCA A;  2PCD A;  3MI1 A;  1EOC B;  5TD3 A;  1DLQ A;  2BUM A;  1EOC A;  3HJ8 A;  4ILV A;  2BUY B;  3O5U A;  3HGI A;  3PCI A;  1EOA B;  3LKT A;  2BUY A;  3HJQ A;  1YKO B;  3MI5 M;  3PCF M;  3MV4 M;  1EO2 A;  2BUR A;  1YKL B;  2BUW B;  3N9T A;  2BUU B;  3HHY A;  4WHP B;  1YKL A;  2BUW A;  3LXV M;  4WHR A;  3PCC M;  4WHP A;  3O32 A;  3T67 M;  3PCF A;  3MV4 A;  1YKP B;  1S9A A;  3I4V A;  4WHO B;  2XSV A;  3PCH M;  3MV6 M;  2BUV B;  4WHO A;  3PCD M;  3LXV A;  3O6R A;  2BUQ B;  3PCC A;  3PCJ M;  4WHP D;  3T67 A;  1DLT A;  1EOA A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.