1EO2 | Genus

Total Genus 55

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	55
sequence length	238
structure length	238
Chain Sequence	IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. pubmed doi rcsb
molecule keywords	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags	Oxidoreductase
source organism	Acinetobacter sp.
total genus	55
structure length	238
sequence length	238
ec nomenclature	ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date	2000-03-21

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00775	Dioxygenase_C	Dioxygenase
B	PF12391	PCDO_beta_N	Protocatechuate 3,4-dioxygenase beta subunit N terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	1eo2B00

3PCDM 2BUYA 4WHPB 3LKTA 1S9AA 2BUVB 3PCCM 3MI5A 4WHRF 4WHSB 3PCEM 4WHOA 3PCDA 4WHRB 2BURA 3PCCA 2XSUA 4WHQB 1YKPB 3PCEA 1YKNA 3O6JA 1EO2B 4WHOD 2PCDM 1YKOB 3TH1A 1EO9A 2BUXB 2BUTB 3MFLA 2BUWB 3LKTM 3MI5M 3HKPA 2BUYB 3MI1M 4WHOB 3PCIM 3HJQA 3MV6M 2BURB 3LMXM 1YKKA 3MI1A 1YKNB 2XSVA 3PCIA 3MV6A 3PCHM 3LMXA 3MFLM 3PCJM 3PCFM 1EO9B 1EOBA 3PCHA 3MV4M 3PCJA 4ILVA 1YKLA 1EOAA 1DLMA 3PCFA 3LXVA 3PCGM 2BV0A 2XSRA 3MV4A 3PCKM 3PCAA 3PCGA 2BOYA 1YKKB 2AZQA 3PCKA 3N9TA 2BUUA 2BUQA 1YKMA 2BUMA 2BUZA 1EOBB 3LXVM 3O32A 1YKLB 1EOAB 3HJ8A 1EOCA 3I51A 3T63M 1DLQA 3PCMM 2BV0B 3PCAM 1DMHA 3PCBA 3O5UA 3O6RA 3T67A 3T63A 3HHXA 4WHPA 3PCMA 2BUVA 5TD3A 3I4VA 3HGIA 4WHSA 3PCNM 2BUUB 3PCLM 4WHRA 3HJSA 2BUQB 4ILTA 1YKMB 2BUMB 4WHQA 1YKPA 4WHPD 1DLTA 3PCNA 2BUZB 4WHSD 3PCLA 1EO2A 1TMXA 1YKOA 1EOCB 2BUXA 3PCBM 2PCDA 2BUTA 3HHYA 3T67M 3I4YA 2BUWA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3PCD M;  2BUY A;  4WHP B;  3LKT A;  1S9A A;  2BUV B;  3PCC M;  3MI5 A;  4WHR F;  4WHS B;  3PCE M;  4WHO A;  3PCD A;  4WHR B;  2BUR A;  3PCC A;  2XSU A;  4WHQ B;  1YKP B;  3PCE A;  1YKN A;  3O6J A;  1EO2 B;  4WHO D;  2PCD M;  1YKO B;  3TH1 A;  1EO9 A;  2BUX B;  2BUT B;  3MFL A;  2BUW B;  3LKT M;  3MI5 M;  3HKP A;  2BUY B;  3MI1 M;  4WHO B;  3PCI M;  3HJQ A;  3MV6 M;  2BUR B;  3LMX M;  1YKK A;  3MI1 A;  1YKN B;  2XSV A;  3PCI A;  3MV6 A;  3PCH M;  3LMX A;  3MFL M;  3PCJ M;  3PCF M;  1EO9 B;  1EOB A;  3PCH A;  3MV4 M;  3PCJ A;  4ILV A;  1YKL A;  1EOA A;  1DLM A;  3PCF A;  3LXV A;  3PCG M;  2BV0 A;  2XSR A;  3MV4 A;  3PCK M;  3PCA A;  3PCG A;  2BOY A;  1YKK B;  2AZQ A;  3PCK A;  3N9T A;  2BUU A;  2BUQ A;  1YKM A;  2BUM A;  2BUZ A;  1EOB B;  3LXV M;  3O32 A;  1YKL B;  1EOA B;  3HJ8 A;  1EOC A;  3I51 A;  3T63 M;  1DLQ A;  3PCM M;  2BV0 B;  3PCA M;  1DMH A;  3PCB A;  3O5U A;  3O6R A;  3T67 A;  3T63 A;  3HHX A;  4WHP A;  3PCM A;  2BUV A;  5TD3 A;  3I4V A;  3HGI A;  4WHS A;  3PCN M;  2BUU B;  3PCL M;  4WHR A;  3HJS A;  2BUQ B;  4ILT A;  1YKM B;  2BUM B;  4WHQ A;  1YKP A;  4WHP D;  1DLT A;  3PCN A;  2BUZ B;  4WHS D;  3PCL A;  1EO2 A;  1TMX A;  1YKO A;  1EOC B;  2BUX A;  3PCB M;  2PCD A;  2BUT A;  3HHY A;  3T67 M;  3I4Y A;  2BUW A; 
#chains in the Genus database with same CATH topology
 3PCD M;  2BUY A;  4WHP B;  3LKT A;  1S9A A;  2BUV B;  3PCC M;  3MI5 A;  4WHR F;  4WHS B;  3PCE M;  4WHO A;  3PCD A;  4WHR B;  2BUR A;  3PCC A;  2XSU A;  4WHQ B;  1YKP B;  3PCE A;  1YKN A;  3O6J A;  1EO2 B;  4WHO D;  2PCD M;  1YKO B;  3TH1 A;  1EO9 A;  2BUX B;  2BUT B;  3MFL A;  2BUW B;  3LKT M;  3MI5 M;  3HKP A;  2BUY B;  3MI1 M;  4WHO B;  3PCI M;  3HJQ A;  3MV6 M;  2BUR B;  3LMX M;  1YKK A;  3MI1 A;  1YKN B;  2XSV A;  3PCI A;  3MV6 A;  3PCH M;  3LMX A;  3MFL M;  3PCJ M;  3PCF M;  1EO9 B;  1EOB A;  3PCH A;  3MV4 M;  3PCJ A;  4ILV A;  1YKL A;  1EOA A;  1DLM A;  3PCF A;  3LXV A;  3PCG M;  2BV0 A;  2XSR A;  3MV4 A;  3PCK M;  3PCA A;  3PCG A;  2BOY A;  1YKK B;  2AZQ A;  3PCK A;  3N9T A;  2BUU A;  2BUQ A;  1YKM A;  2BUM A;  2BUZ A;  1EOB B;  3LXV M;  3O32 A;  1YKL B;  1EOA B;  3HJ8 A;  1EOC A;  3I51 A;  3T63 M;  1DLQ A;  3PCM M;  2BV0 B;  3PCA M;  1DMH A;  3PCB A;  3O5U A;  3O6R A;  3T67 A;  3T63 A;  3HHX A;  4WHP A;  3PCM A;  2BUV A;  5TD3 A;  3I4V A;  3HGI A;  4WHS A;  3PCN M;  2BUU B;  3PCL M;  4WHR A;  3HJS A;  2BUQ B;  4ILT A;  1YKM B;  2BUM B;  4WHQ A;  1YKP A;  4WHP D;  1DLT A;  3PCN A;  2BUZ B;  4WHS D;  3PCL A;  1EO2 A;  1TMX A;  1YKO A;  1EOC B;  2BUX A;  3PCB M;  2PCD A;  2BUT A;  3HHY A;  3T67 M;  3I4Y A;  2BUW A; 
#chains in the Genus database with same CATH homology
 3PCD M;  2BUY A;  4WHP B;  3LKT A;  1S9A A;  2BUV B;  3PCC M;  3MI5 A;  4WHR F;  4WHS B;  3PCE M;  4WHO A;  3PCD A;  4WHR B;  2BUR A;  3PCC A;  2XSU A;  4WHQ B;  1YKP B;  3PCE A;  1YKN A;  3O6J A;  1EO2 B;  4WHO D;  2PCD M;  1YKO B;  3TH1 A;  1EO9 A;  2BUX B;  2BUT B;  3MFL A;  2BUW B;  3LKT M;  3MI5 M;  3HKP A;  2BUY B;  3MI1 M;  4WHO B;  3PCI M;  3HJQ A;  3MV6 M;  2BUR B;  3LMX M;  1YKK A;  3MI1 A;  1YKN B;  2XSV A;  3PCI A;  3MV6 A;  3PCH M;  3LMX A;  3MFL M;  3PCJ M;  3PCF M;  1EO9 B;  1EOB A;  3PCH A;  3MV4 M;  3PCJ A;  4ILV A;  1YKL A;  1EOA A;  1DLM A;  3PCF A;  3LXV A;  3PCG M;  2BV0 A;  2XSR A;  3MV4 A;  3PCK M;  3PCA A;  3PCG A;  2BOY A;  1YKK B;  2AZQ A;  3PCK A;  3N9T A;  2BUU A;  2BUQ A;  1YKM A;  2BUM A;  2BUZ A;  1EOB B;  3LXV M;  3O32 A;  1YKL B;  1EOA B;  3HJ8 A;  1EOC A;  3I51 A;  3T63 M;  1DLQ A;  3PCM M;  2BV0 B;  3PCA M;  1DMH A;  3PCB A;  3O5U A;  3O6R A;  3T67 A;  3T63 A;  3HHX A;  4WHP A;  3PCM A;  2BUV A;  5TD3 A;  3I4V A;  3HGI A;  4WHS A;  3PCN M;  2BUU B;  3PCL M;  4WHR A;  3HJS A;  2BUQ B;  4ILT A;  1YKM B;  2BUM B;  4WHQ A;  1YKP A;  4WHP D;  1DLT A;  3PCN A;  2BUZ B;  4WHS D;  3PCL A;  1EO2 A;  1TMX A;  1YKO A;  1EOC B;  2BUX A;  3PCB M;  2PCD A;  2BUT A;  3HHY A;  3T67 M;  3I4Y A;  2BUW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1EO2B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations