1EO9B

Crystal structure of acinetobacter sp. adp1 protocatechuate 3,4-dioxygenase at ph < 7.0
Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
238
structure length
238
Chain Sequence
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags Oxidoreductase
source organism Acinetobacter sp.
total genus 54
structure length 238
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2000-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 1eo9B00
3MI1M 2BURB 1EOAA 3PCCM 3HHXA 3PCBA 3PCHM 2BUMB 2BUZB 3MI1A 1DLMA 3O6JA 1EO2B 3O6RA 3PCCA 4WHQA 2BUXA 1YKPA 4ILVA 4WHSA 1YKNA 4WHPB 4WHRF 3O5UA 1YKMB 4WHRA 4WHSD 1EOBA 3PCAM 1DLQA 3LKTM 1YKOA 3T63M 3I4VA 3MV6M 1EOAB 3PCEA 1YKLA 3PCGA 1DMHA 3T67M 5TD3A 3PCAA 2BV0A 3LKTA 3PCFM 3T63A 1EO9A 3MV6A 2BUTA 4ILTA 4WHQB 2BUYA 1EO9B 2BUXB 3PCHA 1EOCA 3HJ8A 1YKPB 4WHSB 3T67A 3PCDM 1YKNB 2XSRA 3HJQA 2BOYA 4WHRB 1DLTA 3HHYA 1TMXA 2BUVA 2XSUA 2BUQA 2XSVA 3LMXM 3PCMM 4WHOA 2BUUA 1EOBB 3HGIA 3N9TA 3MI5M 1YKOB 1YKKA 3I51A 3MV4M 3MFLM 4WHOD 1YKLB 3LMXA 2AZQA 2PCDM 2BV0B 4WHPA 3MI5A 3PCLM 3TH1A 3I4YA 3MV4A 3PCNM 2BUWA 2BUTB 2BUYB 1EOCB 2BUWB 4WHPD 3PCKM 3LXVM 3PCFA 3PCIM 2PCDA 1S9AA 2BUMA 2BUZA 2BUVB 3O32A 3HKPA 3PCLA 2BUQB 1EO2A 3PCNA 4WHOB 2BUUB 3PCDA 3PCJM 3PCKA 3LXVA 1YKKB 3PCIA 3PCMA 1YKMA 3PCBM 2BURA 3HJSA 3PCGM 3PCEM 3PCJA 3MFLA
chains in the Genus database with same CATH superfamily
3MI1M 2BURB 1EOAA 3PCCM 3HHXA 3PCBA 3PCHM 2BUMB 2BUZB 3MI1A 1DLMA 3O6JA 1EO2B 3O6RA 3PCCA 4WHQA 2BUXA 1YKPA 4ILVA 4WHSA 1YKNA 4WHPB 4WHRF 3O5UA 1YKMB 4WHRA 4WHSD 1EOBA 3PCAM 1DLQA 3LKTM 1YKOA 3T63M 3I4VA 3MV6M 1EOAB 3PCEA 1YKLA 3PCGA 1DMHA 3T67M 5TD3A 3PCAA 2BV0A 3LKTA 3PCFM 3T63A 1EO9A 3MV6A 2BUTA 4ILTA 4WHQB 2BUYA 1EO9B 2BUXB 3PCHA 1EOCA 3HJ8A 1YKPB 4WHSB 3T67A 3PCDM 1YKNB 2XSRA 3HJQA 2BOYA 4WHRB 1DLTA 3HHYA 1TMXA 2BUVA 2XSUA 2BUQA 2XSVA 3LMXM 3PCMM 4WHOA 2BUUA 1EOBB 3HGIA 3N9TA 3MI5M 1YKOB 1YKKA 3I51A 3MV4M 3MFLM 4WHOD 1YKLB 3LMXA 2AZQA 2PCDM 2BV0B 4WHPA 3MI5A 3PCLM 3TH1A 3I4YA 3MV4A 3PCNM 2BUWA 2BUTB 2BUYB 1EOCB 2BUWB 4WHPD 3PCKM 3LXVM 3PCFA 3PCIM 2PCDA 1S9AA 2BUMA 2BUZA 2BUVB 3O32A 3HKPA 3PCLA 2BUQB 1EO2A 3PCNA 4WHOB 2BUUB 3PCDA 3PCJM 3PCKA 3LXVA 1YKKB 3PCIA 3PCMA 1YKMA 3PCBM 2BURA 3HJSA 3PCGM 3PCEM 3PCJA 3MFLA
chains in the Genus database with same CATH topology
3MI1M 2BURB 1EOAA 3PCCM 3HHXA 3PCBA 3PCHM 2BUMB 2BUZB 3MI1A 1DLMA 3O6JA 1EO2B 3O6RA 3PCCA 4WHQA 2BUXA 1YKPA 4ILVA 4WHSA 1YKNA 4WHPB 4WHRF 3O5UA 1YKMB 4WHRA 4WHSD 1EOBA 3PCAM 1DLQA 3LKTM 1YKOA 3T63M 3I4VA 3MV6M 1EOAB 3PCEA 1YKLA 3PCGA 1DMHA 3T67M 5TD3A 3PCAA 2BV0A 3LKTA 3PCFM 3T63A 1EO9A 3MV6A 2BUTA 4ILTA 4WHQB 2BUYA 1EO9B 2BUXB 3PCHA 1EOCA 3HJ8A 1YKPB 4WHSB 3T67A 3PCDM 1YKNB 2XSRA 3HJQA 2BOYA 4WHRB 1DLTA 3HHYA 1TMXA 2BUVA 2XSUA 2BUQA 2XSVA 3LMXM 3PCMM 4WHOA 2BUUA 1EOBB 3HGIA 3N9TA 3MI5M 1YKOB 1YKKA 3I51A 3MV4M 3MFLM 4WHOD 1YKLB 3LMXA 2AZQA 2PCDM 2BV0B 4WHPA 3MI5A 3PCLM 3TH1A 3I4YA 3MV4A 3PCNM 2BUWA 2BUTB 2BUYB 1EOCB 2BUWB 4WHPD 3PCKM 3LXVM 3PCFA 3PCIM 2PCDA 1S9AA 2BUMA 2BUZA 2BUVB 3O32A 3HKPA 3PCLA 2BUQB 1EO2A 3PCNA 4WHOB 2BUUB 3PCDA 3PCJM 3PCKA 3LXVA 1YKKB 3PCIA 3PCMA 1YKMA 3PCBM 2BURA 3HJSA 3PCGM 3PCEM 3PCJA 3MFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MI1 M;  2BUR B;  1EOA A;  3PCC M;  3HHX A;  3PCB A;  3PCH M;  2BUM B;  2BUZ B;  3MI1 A;  1DLM A;  3O6J A;  1EO2 B;  3O6R A;  3PCC A;  4WHQ A;  2BUX A;  1YKP A;  4ILV A;  4WHS A;  1YKN A;  4WHP B;  4WHR F;  3O5U A;  1YKM B;  4WHR A;  4WHS D;  1EOB A;  3PCA M;  1DLQ A;  3LKT M;  1YKO A;  3T63 M;  3I4V A;  3MV6 M;  1EOA B;  3PCE A;  1YKL A;  3PCG A;  1DMH A;  3T67 M;  5TD3 A;  3PCA A;  2BV0 A;  3LKT A;  3PCF M;  3T63 A;  1EO9 A;  3MV6 A;  2BUT A;  4ILT A;  4WHQ B;  2BUY A;  1EO9 B;  2BUX B;  3PCH A;  1EOC A;  3HJ8 A;  1YKP B;  4WHS B;  3T67 A;  3PCD M;  1YKN B;  2XSR A;  3HJQ A;  2BOY A;  4WHR B;  1DLT A;  3HHY A;  1TMX A;  2BUV A;  2XSU A;  2BUQ A;  2XSV A;  3LMX M;  3PCM M;  4WHO A;  2BUU A;  1EOB B;  3HGI A;  3N9T A;  3MI5 M;  1YKO B;  1YKK A;  3I51 A;  3MV4 M;  3MFL M;  4WHO D;  1YKL B;  3LMX A;  2AZQ A;  2PCD M;  2BV0 B;  4WHP A;  3MI5 A;  3PCL M;  3TH1 A;  3I4Y A;  3MV4 A;  3PCN M;  2BUW A;  2BUT B;  2BUY B;  1EOC B;  2BUW B;  4WHP D;  3PCK M;  3LXV M;  3PCF A;  3PCI M;  2PCD A;  1S9A A;  2BUM A;  2BUZ A;  2BUV B;  3O32 A;  3HKP A;  3PCL A;  2BUQ B;  1EO2 A;  3PCN A;  4WHO B;  2BUU B;  3PCD A;  3PCJ M;  3PCK A;  3LXV A;  1YKK B;  3PCI A;  3PCM A;  1YKM A;  3PCB M;  2BUR A;  3HJS A;  3PCG M;  3PCE M;  3PCJ A;  3MFL A; 
#chains in the Genus database with same CATH topology
 3MI1 M;  2BUR B;  1EOA A;  3PCC M;  3HHX A;  3PCB A;  3PCH M;  2BUM B;  2BUZ B;  3MI1 A;  1DLM A;  3O6J A;  1EO2 B;  3O6R A;  3PCC A;  4WHQ A;  2BUX A;  1YKP A;  4ILV A;  4WHS A;  1YKN A;  4WHP B;  4WHR F;  3O5U A;  1YKM B;  4WHR A;  4WHS D;  1EOB A;  3PCA M;  1DLQ A;  3LKT M;  1YKO A;  3T63 M;  3I4V A;  3MV6 M;  1EOA B;  3PCE A;  1YKL A;  3PCG A;  1DMH A;  3T67 M;  5TD3 A;  3PCA A;  2BV0 A;  3LKT A;  3PCF M;  3T63 A;  1EO9 A;  3MV6 A;  2BUT A;  4ILT A;  4WHQ B;  2BUY A;  1EO9 B;  2BUX B;  3PCH A;  1EOC A;  3HJ8 A;  1YKP B;  4WHS B;  3T67 A;  3PCD M;  1YKN B;  2XSR A;  3HJQ A;  2BOY A;  4WHR B;  1DLT A;  3HHY A;  1TMX A;  2BUV A;  2XSU A;  2BUQ A;  2XSV A;  3LMX M;  3PCM M;  4WHO A;  2BUU A;  1EOB B;  3HGI A;  3N9T A;  3MI5 M;  1YKO B;  1YKK A;  3I51 A;  3MV4 M;  3MFL M;  4WHO D;  1YKL B;  3LMX A;  2AZQ A;  2PCD M;  2BV0 B;  4WHP A;  3MI5 A;  3PCL M;  3TH1 A;  3I4Y A;  3MV4 A;  3PCN M;  2BUW A;  2BUT B;  2BUY B;  1EOC B;  2BUW B;  4WHP D;  3PCK M;  3LXV M;  3PCF A;  3PCI M;  2PCD A;  1S9A A;  2BUM A;  2BUZ A;  2BUV B;  3O32 A;  3HKP A;  3PCL A;  2BUQ B;  1EO2 A;  3PCN A;  4WHO B;  2BUU B;  3PCD A;  3PCJ M;  3PCK A;  3LXV A;  1YKK B;  3PCI A;  3PCM A;  1YKM A;  3PCB M;  2BUR A;  3HJS A;  3PCG M;  3PCE M;  3PCJ A;  3MFL A; 
#chains in the Genus database with same CATH homology
 3MI1 M;  2BUR B;  1EOA A;  3PCC M;  3HHX A;  3PCB A;  3PCH M;  2BUM B;  2BUZ B;  3MI1 A;  1DLM A;  3O6J A;  1EO2 B;  3O6R A;  3PCC A;  4WHQ A;  2BUX A;  1YKP A;  4ILV A;  4WHS A;  1YKN A;  4WHP B;  4WHR F;  3O5U A;  1YKM B;  4WHR A;  4WHS D;  1EOB A;  3PCA M;  1DLQ A;  3LKT M;  1YKO A;  3T63 M;  3I4V A;  3MV6 M;  1EOA B;  3PCE A;  1YKL A;  3PCG A;  1DMH A;  3T67 M;  5TD3 A;  3PCA A;  2BV0 A;  3LKT A;  3PCF M;  3T63 A;  1EO9 A;  3MV6 A;  2BUT A;  4ILT A;  4WHQ B;  2BUY A;  1EO9 B;  2BUX B;  3PCH A;  1EOC A;  3HJ8 A;  1YKP B;  4WHS B;  3T67 A;  3PCD M;  1YKN B;  2XSR A;  3HJQ A;  2BOY A;  4WHR B;  1DLT A;  3HHY A;  1TMX A;  2BUV A;  2XSU A;  2BUQ A;  2XSV A;  3LMX M;  3PCM M;  4WHO A;  2BUU A;  1EOB B;  3HGI A;  3N9T A;  3MI5 M;  1YKO B;  1YKK A;  3I51 A;  3MV4 M;  3MFL M;  4WHO D;  1YKL B;  3LMX A;  2AZQ A;  2PCD M;  2BV0 B;  4WHP A;  3MI5 A;  3PCL M;  3TH1 A;  3I4Y A;  3MV4 A;  3PCN M;  2BUW A;  2BUT B;  2BUY B;  1EOC B;  2BUW B;  4WHP D;  3PCK M;  3LXV M;  3PCF A;  3PCI M;  2PCD A;  1S9A A;  2BUM A;  2BUZ A;  2BUV B;  3O32 A;  3HKP A;  3PCL A;  2BUQ B;  1EO2 A;  3PCN A;  4WHO B;  2BUU B;  3PCD A;  3PCJ M;  3PCK A;  3LXV A;  1YKK B;  3PCI A;  3PCM A;  1YKM A;  3PCB M;  2BUR A;  3HJS A;  3PCG M;  3PCE M;  3PCJ A;  3MFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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