1EO9 | Genus

Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	238
structure length	238
Chain Sequence	IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. pubmed doi rcsb
molecule keywords	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags	Oxidoreductase
source organism	Acinetobacter sp.
total genus	54
structure length	238
sequence length	238
ec nomenclature	ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date	2000-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00775	Dioxygenase_C	Dioxygenase
B	PF12391	PCDO_beta_N	Protocatechuate 3,4-dioxygenase beta subunit N terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	1eo9B00

4WHRA 1EOCA 3HGIA 4ILTA 3PCLM 3MI1M 2BV0B 3LXVM 1EOAA 1YKKB 3PCMA 2BUXA 3MI5A 1EO9B 3O32A 2BURB 4WHSB 2BUVA 1EOBA 3T67A 1EOCB 3O6RA 3PCFA 3HJQA 4ILVA 3PCGA 2BV0A 3PCAM 3PCMM 3PCEA 2BOYA 2BUXB 3HJ8A 1EO2B 1YKNB 3T67M 1EOBB 3MV4A 3PCFM 3MV6A 3PCEM 4WHPA 1YKLB 1YKPB 3PCKM 3TH1A 3HHYA 1EO2A 3I4YA 1YKNA 3O6JA 2BUUA 3MV4M 3HKPA 3PCNA 1DLQA 3MFLA 2XSRA 2BUYB 3PCIA 4WHPB 3O5UA 3MI5M 1YKLA 1YKPA 2BUUB 2BUZB 3PCNM 1S9AA 3MFLM 4WHOD 2BUMB 3HJSA 3PCGM 3LKTA 3PCJA 3I51A 1DLMA 2BUWA 2BUYA 2PCDA 4WHQB 2AZQA 1DLTA 3PCHA 2BUQA 4WHSD 2BUZA 3I4VA 2BUMA 3LKTM 2BURA 3MV6M 2BUWB 2PCDM 1YKMB 1DMHA 3PCHM 4WHQA 2BUQB 4WHOB 2XSUA 3PCBA 1YKOB 2XSVA 3PCCA 2BUTA 3PCAA 1TMXA 4WHRF 3PCIM 3PCDA 3HHXA 1YKMA 4WHRB 3LMXA 3T63A 3PCBM 4WHOA 3PCCM 3N9TA 2BUTB 1YKOA 3PCLA 1EOAB 3MI1A 3PCJM 3PCDM 3LXVA 1YKKA 4WHPD 3PCKA 5TD3A 1EO9A 3LMXM 2BUVB 4WHSA 3T63M
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4WHR A;  1EOC A;  3HGI A;  4ILT A;  3PCL M;  3MI1 M;  2BV0 B;  3LXV M;  1EOA A;  1YKK B;  3PCM A;  2BUX A;  3MI5 A;  1EO9 B;  3O32 A;  2BUR B;  4WHS B;  2BUV A;  1EOB A;  3T67 A;  1EOC B;  3O6R A;  3PCF A;  3HJQ A;  4ILV A;  3PCG A;  2BV0 A;  3PCA M;  3PCM M;  3PCE A;  2BOY A;  2BUX B;  3HJ8 A;  1EO2 B;  1YKN B;  3T67 M;  1EOB B;  3MV4 A;  3PCF M;  3MV6 A;  3PCE M;  4WHP A;  1YKL B;  1YKP B;  3PCK M;  3TH1 A;  3HHY A;  1EO2 A;  3I4Y A;  1YKN A;  3O6J A;  2BUU A;  3MV4 M;  3HKP A;  3PCN A;  1DLQ A;  3MFL A;  2XSR A;  2BUY B;  3PCI A;  4WHP B;  3O5U A;  3MI5 M;  1YKL A;  1YKP A;  2BUU B;  2BUZ B;  3PCN M;  1S9A A;  3MFL M;  4WHO D;  2BUM B;  3HJS A;  3PCG M;  3LKT A;  3PCJ A;  3I51 A;  1DLM A;  2BUW A;  2BUY A;  2PCD A;  4WHQ B;  2AZQ A;  1DLT A;  3PCH A;  2BUQ A;  4WHS D;  2BUZ A;  3I4V A;  2BUM A;  3LKT M;  2BUR A;  3MV6 M;  2BUW B;  2PCD M;  1YKM B;  1DMH A;  3PCH M;  4WHQ A;  2BUQ B;  4WHO B;  2XSU A;  3PCB A;  1YKO B;  2XSV A;  3PCC A;  2BUT A;  3PCA A;  1TMX A;  4WHR F;  3PCI M;  3PCD A;  3HHX A;  1YKM A;  4WHR B;  3LMX A;  3T63 A;  3PCB M;  4WHO A;  3PCC M;  3N9T A;  2BUT B;  1YKO A;  3PCL A;  1EOA B;  3MI1 A;  3PCJ M;  3PCD M;  3LXV A;  1YKK A;  4WHP D;  3PCK A;  5TD3 A;  1EO9 A;  3LMX M;  2BUV B;  4WHS A;  3T63 M; 
#chains in the Genus database with same CATH topology
 4WHR A;  1EOC A;  3HGI A;  4ILT A;  3PCL M;  3MI1 M;  2BV0 B;  3LXV M;  1EOA A;  1YKK B;  3PCM A;  2BUX A;  3MI5 A;  1EO9 B;  3O32 A;  2BUR B;  4WHS B;  2BUV A;  1EOB A;  3T67 A;  1EOC B;  3O6R A;  3PCF A;  3HJQ A;  4ILV A;  3PCG A;  2BV0 A;  3PCA M;  3PCM M;  3PCE A;  2BOY A;  2BUX B;  3HJ8 A;  1EO2 B;  1YKN B;  3T67 M;  1EOB B;  3MV4 A;  3PCF M;  3MV6 A;  3PCE M;  4WHP A;  1YKL B;  1YKP B;  3PCK M;  3TH1 A;  3HHY A;  1EO2 A;  3I4Y A;  1YKN A;  3O6J A;  2BUU A;  3MV4 M;  3HKP A;  3PCN A;  1DLQ A;  3MFL A;  2XSR A;  2BUY B;  3PCI A;  4WHP B;  3O5U A;  3MI5 M;  1YKL A;  1YKP A;  2BUU B;  2BUZ B;  3PCN M;  1S9A A;  3MFL M;  4WHO D;  2BUM B;  3HJS A;  3PCG M;  3LKT A;  3PCJ A;  3I51 A;  1DLM A;  2BUW A;  2BUY A;  2PCD A;  4WHQ B;  2AZQ A;  1DLT A;  3PCH A;  2BUQ A;  4WHS D;  2BUZ A;  3I4V A;  2BUM A;  3LKT M;  2BUR A;  3MV6 M;  2BUW B;  2PCD M;  1YKM B;  1DMH A;  3PCH M;  4WHQ A;  2BUQ B;  4WHO B;  2XSU A;  3PCB A;  1YKO B;  2XSV A;  3PCC A;  2BUT A;  3PCA A;  1TMX A;  4WHR F;  3PCI M;  3PCD A;  3HHX A;  1YKM A;  4WHR B;  3LMX A;  3T63 A;  3PCB M;  4WHO A;  3PCC M;  3N9T A;  2BUT B;  1YKO A;  3PCL A;  1EOA B;  3MI1 A;  3PCJ M;  3PCD M;  3LXV A;  1YKK A;  4WHP D;  3PCK A;  5TD3 A;  1EO9 A;  3LMX M;  2BUV B;  4WHS A;  3T63 M; 
#chains in the Genus database with same CATH homology
 4WHR A;  1EOC A;  3HGI A;  4ILT A;  3PCL M;  3MI1 M;  2BV0 B;  3LXV M;  1EOA A;  1YKK B;  3PCM A;  2BUX A;  3MI5 A;  1EO9 B;  3O32 A;  2BUR B;  4WHS B;  2BUV A;  1EOB A;  3T67 A;  1EOC B;  3O6R A;  3PCF A;  3HJQ A;  4ILV A;  3PCG A;  2BV0 A;  3PCA M;  3PCM M;  3PCE A;  2BOY A;  2BUX B;  3HJ8 A;  1EO2 B;  1YKN B;  3T67 M;  1EOB B;  3MV4 A;  3PCF M;  3MV6 A;  3PCE M;  4WHP A;  1YKL B;  1YKP B;  3PCK M;  3TH1 A;  3HHY A;  1EO2 A;  3I4Y A;  1YKN A;  3O6J A;  2BUU A;  3MV4 M;  3HKP A;  3PCN A;  1DLQ A;  3MFL A;  2XSR A;  2BUY B;  3PCI A;  4WHP B;  3O5U A;  3MI5 M;  1YKL A;  1YKP A;  2BUU B;  2BUZ B;  3PCN M;  1S9A A;  3MFL M;  4WHO D;  2BUM B;  3HJS A;  3PCG M;  3LKT A;  3PCJ A;  3I51 A;  1DLM A;  2BUW A;  2BUY A;  2PCD A;  4WHQ B;  2AZQ A;  1DLT A;  3PCH A;  2BUQ A;  4WHS D;  2BUZ A;  3I4V A;  2BUM A;  3LKT M;  2BUR A;  3MV6 M;  2BUW B;  2PCD M;  1YKM B;  1DMH A;  3PCH M;  4WHQ A;  2BUQ B;  4WHO B;  2XSU A;  3PCB A;  1YKO B;  2XSV A;  3PCC A;  2BUT A;  3PCA A;  1TMX A;  4WHR F;  3PCI M;  3PCD A;  3HHX A;  1YKM A;  4WHR B;  3LMX A;  3T63 A;  3PCB M;  4WHO A;  3PCC M;  3N9T A;  2BUT B;  1YKO A;  3PCL A;  1EOA B;  3MI1 A;  3PCJ M;  3PCD M;  3LXV A;  1YKK A;  4WHP D;  3PCK A;  5TD3 A;  1EO9 A;  3LMX M;  2BUV B;  4WHS A;  3T63 M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1EO9B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations