1EOAB

Crystal structure of acinetobacter sp. adp1 protocatechuate 3,4-dioxygenase in complex with cyanide
Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
238
structure length
238
Chain Sequence
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase.
pubmed doi rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags Oxidoreductase
source organism Acinetobacter sp.
total genus 58
structure length 238
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2000-03-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 1eoaB00
2BUXA 3MV4M 3PCGA 3I4YA 2BUWA 1EOBB 1YKKB 1YKLB 3PCDM 3MI5A 3PCAM 3MV6M 3LMXA 2BUTA 3HHXA 3HKPA 3MFLA 3T67A 3PCKA 4WHQA 2BUXB 3HHYA 1YKNA 2BUWB 2BUYA 3PCHM 2BUTB 3PCEM 3PCGM 3HGIA 4WHOA 2BOYA 3O6JA 3PCNA 1YKPA 1EO9A 4WHQB 3MI5M 3PCMA 4WHPA 2BUZA 1DLTA 3PCFM 1EO2A 3LMXM 2BUMA 1YKNB 2XSVA 3PCLM 3LXVA 2BUYB 3MFLM 3T67M 3O5UA 3PCKM 2PCDA 3HJ8A 4WHSD 2BV0A 1EOAA 4WHOB 1DLQA 3O6RA 1YKPB 1EO9B 3PCCA 4WHPB 3PCJA 2BUZB 1EOCA 3TH1A 1EO2B 2BURA 2BUMB 4ILVA 2BUVA 3PCNM 3PCMM 2BV0B 1EOAB 1YKOA 1TMXA 3LXVM 3LKTA 3O32A 1YKMA 1EOCB 2PCDM 4WHRF 2BUUA 1DLMA 2BURB 2BUVB 5TD3A 4WHPD 3PCJM 1S9AA 1YKOB 3PCIA 3T63A 1YKMB 2XSUA 2BUUB 3MI1A 3PCBA 4WHSA 3LKTM 3PCEA 2AZQA 4WHRA 1DMHA 3MV4A 3PCFA 3N9TA 2BUQA 3PCLA 3PCDA 3PCAA 3MV6A 3PCIM 3I4VA 4WHOD 3T63M 4WHSB 3PCCM 1EOBA 4WHRB 1YKKA 1YKLA 3MI1M 3PCBM 2XSRA 3I51A 2BUQB 3HJSA 3PCHA 3HJQA 4ILTA
chains in the Genus database with same CATH superfamily
2BUXA 3MV4M 3PCGA 3I4YA 2BUWA 1EOBB 1YKKB 1YKLB 3PCDM 3MI5A 3PCAM 3MV6M 3LMXA 2BUTA 3HHXA 3HKPA 3MFLA 3T67A 3PCKA 4WHQA 2BUXB 3HHYA 1YKNA 2BUWB 2BUYA 3PCHM 2BUTB 3PCEM 3PCGM 3HGIA 4WHOA 2BOYA 3O6JA 3PCNA 1YKPA 1EO9A 4WHQB 3MI5M 3PCMA 4WHPA 2BUZA 1DLTA 3PCFM 1EO2A 3LMXM 2BUMA 1YKNB 2XSVA 3PCLM 3LXVA 2BUYB 3MFLM 3T67M 3O5UA 3PCKM 2PCDA 3HJ8A 4WHSD 2BV0A 1EOAA 4WHOB 1DLQA 3O6RA 1YKPB 1EO9B 3PCCA 4WHPB 3PCJA 2BUZB 1EOCA 3TH1A 1EO2B 2BURA 2BUMB 4ILVA 2BUVA 3PCNM 3PCMM 2BV0B 1EOAB 1YKOA 1TMXA 3LXVM 3LKTA 3O32A 1YKMA 1EOCB 2PCDM 4WHRF 2BUUA 1DLMA 2BURB 2BUVB 5TD3A 4WHPD 3PCJM 1S9AA 1YKOB 3PCIA 3T63A 1YKMB 2XSUA 2BUUB 3MI1A 3PCBA 4WHSA 3LKTM 3PCEA 2AZQA 4WHRA 1DMHA 3MV4A 3PCFA 3N9TA 2BUQA 3PCLA 3PCDA 3PCAA 3MV6A 3PCIM 3I4VA 4WHOD 3T63M 4WHSB 3PCCM 1EOBA 4WHRB 1YKKA 1YKLA 3MI1M 3PCBM 2XSRA 3I51A 2BUQB 3HJSA 3PCHA 3HJQA 4ILTA
chains in the Genus database with same CATH topology
2BUXA 3MV4M 3PCGA 3I4YA 2BUWA 1EOBB 1YKKB 1YKLB 3PCDM 3MI5A 3PCAM 3MV6M 3LMXA 2BUTA 3HHXA 3HKPA 3MFLA 3T67A 3PCKA 4WHQA 2BUXB 3HHYA 1YKNA 2BUWB 2BUYA 3PCHM 2BUTB 3PCEM 3PCGM 3HGIA 4WHOA 2BOYA 3O6JA 3PCNA 1YKPA 1EO9A 4WHQB 3MI5M 3PCMA 4WHPA 2BUZA 1DLTA 3PCFM 1EO2A 3LMXM 2BUMA 1YKNB 2XSVA 3PCLM 3LXVA 2BUYB 3MFLM 3T67M 3O5UA 3PCKM 2PCDA 3HJ8A 4WHSD 2BV0A 1EOAA 4WHOB 1DLQA 3O6RA 1YKPB 1EO9B 3PCCA 4WHPB 3PCJA 2BUZB 1EOCA 3TH1A 1EO2B 2BURA 2BUMB 4ILVA 2BUVA 3PCNM 3PCMM 2BV0B 1EOAB 1YKOA 1TMXA 3LXVM 3LKTA 3O32A 1YKMA 1EOCB 2PCDM 4WHRF 2BUUA 1DLMA 2BURB 2BUVB 5TD3A 4WHPD 3PCJM 1S9AA 1YKOB 3PCIA 3T63A 1YKMB 2XSUA 2BUUB 3MI1A 3PCBA 4WHSA 3LKTM 3PCEA 2AZQA 4WHRA 1DMHA 3MV4A 3PCFA 3N9TA 2BUQA 3PCLA 3PCDA 3PCAA 3MV6A 3PCIM 3I4VA 4WHOD 3T63M 4WHSB 3PCCM 1EOBA 4WHRB 1YKKA 1YKLA 3MI1M 3PCBM 2XSRA 3I51A 2BUQB 3HJSA 3PCHA 3HJQA 4ILTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BUX A;  3MV4 M;  3PCG A;  3I4Y A;  2BUW A;  1EOB B;  1YKK B;  1YKL B;  3PCD M;  3MI5 A;  3PCA M;  3MV6 M;  3LMX A;  2BUT A;  3HHX A;  3HKP A;  3MFL A;  3T67 A;  3PCK A;  4WHQ A;  2BUX B;  3HHY A;  1YKN A;  2BUW B;  2BUY A;  3PCH M;  2BUT B;  3PCE M;  3PCG M;  3HGI A;  4WHO A;  2BOY A;  3O6J A;  3PCN A;  1YKP A;  1EO9 A;  4WHQ B;  3MI5 M;  3PCM A;  4WHP A;  2BUZ A;  1DLT A;  3PCF M;  1EO2 A;  3LMX M;  2BUM A;  1YKN B;  2XSV A;  3PCL M;  3LXV A;  2BUY B;  3MFL M;  3T67 M;  3O5U A;  3PCK M;  2PCD A;  3HJ8 A;  4WHS D;  2BV0 A;  1EOA A;  4WHO B;  1DLQ A;  3O6R A;  1YKP B;  1EO9 B;  3PCC A;  4WHP B;  3PCJ A;  2BUZ B;  1EOC A;  3TH1 A;  1EO2 B;  2BUR A;  2BUM B;  4ILV A;  2BUV A;  3PCN M;  3PCM M;  2BV0 B;  1EOA B;  1YKO A;  1TMX A;  3LXV M;  3LKT A;  3O32 A;  1YKM A;  1EOC B;  2PCD M;  4WHR F;  2BUU A;  1DLM A;  2BUR B;  2BUV B;  5TD3 A;  4WHP D;  3PCJ M;  1S9A A;  1YKO B;  3PCI A;  3T63 A;  1YKM B;  2XSU A;  2BUU B;  3MI1 A;  3PCB A;  4WHS A;  3LKT M;  3PCE A;  2AZQ A;  4WHR A;  1DMH A;  3MV4 A;  3PCF A;  3N9T A;  2BUQ A;  3PCL A;  3PCD A;  3PCA A;  3MV6 A;  3PCI M;  3I4V A;  4WHO D;  3T63 M;  4WHS B;  3PCC M;  1EOB A;  4WHR B;  1YKK A;  1YKL A;  3MI1 M;  3PCB M;  2XSR A;  3I51 A;  2BUQ B;  3HJS A;  3PCH A;  3HJQ A;  4ILT A; 
#chains in the Genus database with same CATH topology
 2BUX A;  3MV4 M;  3PCG A;  3I4Y A;  2BUW A;  1EOB B;  1YKK B;  1YKL B;  3PCD M;  3MI5 A;  3PCA M;  3MV6 M;  3LMX A;  2BUT A;  3HHX A;  3HKP A;  3MFL A;  3T67 A;  3PCK A;  4WHQ A;  2BUX B;  3HHY A;  1YKN A;  2BUW B;  2BUY A;  3PCH M;  2BUT B;  3PCE M;  3PCG M;  3HGI A;  4WHO A;  2BOY A;  3O6J A;  3PCN A;  1YKP A;  1EO9 A;  4WHQ B;  3MI5 M;  3PCM A;  4WHP A;  2BUZ A;  1DLT A;  3PCF M;  1EO2 A;  3LMX M;  2BUM A;  1YKN B;  2XSV A;  3PCL M;  3LXV A;  2BUY B;  3MFL M;  3T67 M;  3O5U A;  3PCK M;  2PCD A;  3HJ8 A;  4WHS D;  2BV0 A;  1EOA A;  4WHO B;  1DLQ A;  3O6R A;  1YKP B;  1EO9 B;  3PCC A;  4WHP B;  3PCJ A;  2BUZ B;  1EOC A;  3TH1 A;  1EO2 B;  2BUR A;  2BUM B;  4ILV A;  2BUV A;  3PCN M;  3PCM M;  2BV0 B;  1EOA B;  1YKO A;  1TMX A;  3LXV M;  3LKT A;  3O32 A;  1YKM A;  1EOC B;  2PCD M;  4WHR F;  2BUU A;  1DLM A;  2BUR B;  2BUV B;  5TD3 A;  4WHP D;  3PCJ M;  1S9A A;  1YKO B;  3PCI A;  3T63 A;  1YKM B;  2XSU A;  2BUU B;  3MI1 A;  3PCB A;  4WHS A;  3LKT M;  3PCE A;  2AZQ A;  4WHR A;  1DMH A;  3MV4 A;  3PCF A;  3N9T A;  2BUQ A;  3PCL A;  3PCD A;  3PCA A;  3MV6 A;  3PCI M;  3I4V A;  4WHO D;  3T63 M;  4WHS B;  3PCC M;  1EOB A;  4WHR B;  1YKK A;  1YKL A;  3MI1 M;  3PCB M;  2XSR A;  3I51 A;  2BUQ B;  3HJS A;  3PCH A;  3HJQ A;  4ILT A; 
#chains in the Genus database with same CATH homology
 2BUX A;  3MV4 M;  3PCG A;  3I4Y A;  2BUW A;  1EOB B;  1YKK B;  1YKL B;  3PCD M;  3MI5 A;  3PCA M;  3MV6 M;  3LMX A;  2BUT A;  3HHX A;  3HKP A;  3MFL A;  3T67 A;  3PCK A;  4WHQ A;  2BUX B;  3HHY A;  1YKN A;  2BUW B;  2BUY A;  3PCH M;  2BUT B;  3PCE M;  3PCG M;  3HGI A;  4WHO A;  2BOY A;  3O6J A;  3PCN A;  1YKP A;  1EO9 A;  4WHQ B;  3MI5 M;  3PCM A;  4WHP A;  2BUZ A;  1DLT A;  3PCF M;  1EO2 A;  3LMX M;  2BUM A;  1YKN B;  2XSV A;  3PCL M;  3LXV A;  2BUY B;  3MFL M;  3T67 M;  3O5U A;  3PCK M;  2PCD A;  3HJ8 A;  4WHS D;  2BV0 A;  1EOA A;  4WHO B;  1DLQ A;  3O6R A;  1YKP B;  1EO9 B;  3PCC A;  4WHP B;  3PCJ A;  2BUZ B;  1EOC A;  3TH1 A;  1EO2 B;  2BUR A;  2BUM B;  4ILV A;  2BUV A;  3PCN M;  3PCM M;  2BV0 B;  1EOA B;  1YKO A;  1TMX A;  3LXV M;  3LKT A;  3O32 A;  1YKM A;  1EOC B;  2PCD M;  4WHR F;  2BUU A;  1DLM A;  2BUR B;  2BUV B;  5TD3 A;  4WHP D;  3PCJ M;  1S9A A;  1YKO B;  3PCI A;  3T63 A;  1YKM B;  2XSU A;  2BUU B;  3MI1 A;  3PCB A;  4WHS A;  3LKT M;  3PCE A;  2AZQ A;  4WHR A;  1DMH A;  3MV4 A;  3PCF A;  3N9T A;  2BUQ A;  3PCL A;  3PCD A;  3PCA A;  3MV6 A;  3PCI M;  3I4V A;  4WHO D;  3T63 M;  4WHS B;  3PCC M;  1EOB A;  4WHR B;  1YKK A;  1YKL A;  3MI1 M;  3PCB M;  2XSR A;  3I51 A;  2BUQ B;  3HJS A;  3PCH A;  3HJQ A;  4ILT A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.