1EOA | Genus

Total Genus 58

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	238
structure length	238
Chain Sequence	IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. pubmed doi rcsb
molecule keywords	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags	Oxidoreductase
source organism	Acinetobacter sp.
total genus	58
structure length	238
sequence length	238
ec nomenclature	ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date	2000-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00775	Dioxygenase_C	Dioxygenase
B	PF12391	PCDO_beta_N	Protocatechuate 3,4-dioxygenase beta subunit N terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	1eoaB00

2BUXA 3PCLA 3I51A 3PCHM 1DMHA 2BUYA 1YKMB 2AZQA 2BUQB 1YKNA 2BUWB 3O6RA 3MI5M 3PCKA 3PCBM 4WHSD 2BUVB 1YKPA 1YKKB 3PCGA 2BUUA 3PCNM 2BV0A 3HHXA 3PCJM 2BUXB 3PCDM 1EOBA 1TMXA 2BUYB 3LMXM 3PCCM 1YKNB 3HJ8A 3MV4A 3T63A 1EO9A 3MI1M 1YKPB 3PCEM 1EO2A 2BUUB 3TH1A 2BV0B 2BUMA 3HKPA 3PCFM 1EOBB 3HJSA 3LKTA 1DLMA 1EOAA 3PCIA 3PCAA 1EO9B 2XSUA 1EO2B 1YKOA 4WHOD 3T67M 4WHOA 3MV6A 2BUMB 3PCLM 3MFLA 5TD3A 3PCMA 4WHPB 1EOAB 4WHRA 3LXVA 2PCDA 2XSVA 2BOYA 3PCKM 1YKLA 3PCGM 3I4VA 3O6JA 4WHQA 1YKOB 4WHOB 2BUZA 3PCHA 4ILTA 4WHPD 4WHPA 3MI5A 3PCBA 3MV4M 4WHRB 3HHYA 3T63M 3PCNA 1YKLB 4ILVA 4WHQB 3O32A 3PCJA 3N9TA 3HGIA 3PCDA 1EOCA 2BUZB 1S9AA 3LMXA 3PCCA 2BUTA 3LKTM 3MI1A 3PCIM 3PCAM 3PCEA 1DLTA 2BURA 3T67A 4WHSA 3MV6M 3I4YA 2XSRA 3PCFA 1EOCB 1DLQA 3MFLM 2BUTB 3PCMM 1YKMA 2BUWA 2BUQA 3O5UA 3HJQA 2BUVA 1YKKA 2BURB 3LXVM 2PCDM 4WHSB 4WHRF
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2BUX A;  3PCL A;  3I51 A;  3PCH M;  1DMH A;  2BUY A;  1YKM B;  2AZQ A;  2BUQ B;  1YKN A;  2BUW B;  3O6R A;  3MI5 M;  3PCK A;  3PCB M;  4WHS D;  2BUV B;  1YKP A;  1YKK B;  3PCG A;  2BUU A;  3PCN M;  2BV0 A;  3HHX A;  3PCJ M;  2BUX B;  3PCD M;  1EOB A;  1TMX A;  2BUY B;  3LMX M;  3PCC M;  1YKN B;  3HJ8 A;  3MV4 A;  3T63 A;  1EO9 A;  3MI1 M;  1YKP B;  3PCE M;  1EO2 A;  2BUU B;  3TH1 A;  2BV0 B;  2BUM A;  3HKP A;  3PCF M;  1EOB B;  3HJS A;  3LKT A;  1DLM A;  1EOA A;  3PCI A;  3PCA A;  1EO9 B;  2XSU A;  1EO2 B;  1YKO A;  4WHO D;  3T67 M;  4WHO A;  3MV6 A;  2BUM B;  3PCL M;  3MFL A;  5TD3 A;  3PCM A;  4WHP B;  1EOA B;  4WHR A;  3LXV A;  2PCD A;  2XSV A;  2BOY A;  3PCK M;  1YKL A;  3PCG M;  3I4V A;  3O6J A;  4WHQ A;  1YKO B;  4WHO B;  2BUZ A;  3PCH A;  4ILT A;  4WHP D;  4WHP A;  3MI5 A;  3PCB A;  3MV4 M;  4WHR B;  3HHY A;  3T63 M;  3PCN A;  1YKL B;  4ILV A;  4WHQ B;  3O32 A;  3PCJ A;  3N9T A;  3HGI A;  3PCD A;  1EOC A;  2BUZ B;  1S9A A;  3LMX A;  3PCC A;  2BUT A;  3LKT M;  3MI1 A;  3PCI M;  3PCA M;  3PCE A;  1DLT A;  2BUR A;  3T67 A;  4WHS A;  3MV6 M;  3I4Y A;  2XSR A;  3PCF A;  1EOC B;  1DLQ A;  3MFL M;  2BUT B;  3PCM M;  1YKM A;  2BUW A;  2BUQ A;  3O5U A;  3HJQ A;  2BUV A;  1YKK A;  2BUR B;  3LXV M;  2PCD M;  4WHS B;  4WHR F; 
#chains in the Genus database with same CATH topology
 2BUX A;  3PCL A;  3I51 A;  3PCH M;  1DMH A;  2BUY A;  1YKM B;  2AZQ A;  2BUQ B;  1YKN A;  2BUW B;  3O6R A;  3MI5 M;  3PCK A;  3PCB M;  4WHS D;  2BUV B;  1YKP A;  1YKK B;  3PCG A;  2BUU A;  3PCN M;  2BV0 A;  3HHX A;  3PCJ M;  2BUX B;  3PCD M;  1EOB A;  1TMX A;  2BUY B;  3LMX M;  3PCC M;  1YKN B;  3HJ8 A;  3MV4 A;  3T63 A;  1EO9 A;  3MI1 M;  1YKP B;  3PCE M;  1EO2 A;  2BUU B;  3TH1 A;  2BV0 B;  2BUM A;  3HKP A;  3PCF M;  1EOB B;  3HJS A;  3LKT A;  1DLM A;  1EOA A;  3PCI A;  3PCA A;  1EO9 B;  2XSU A;  1EO2 B;  1YKO A;  4WHO D;  3T67 M;  4WHO A;  3MV6 A;  2BUM B;  3PCL M;  3MFL A;  5TD3 A;  3PCM A;  4WHP B;  1EOA B;  4WHR A;  3LXV A;  2PCD A;  2XSV A;  2BOY A;  3PCK M;  1YKL A;  3PCG M;  3I4V A;  3O6J A;  4WHQ A;  1YKO B;  4WHO B;  2BUZ A;  3PCH A;  4ILT A;  4WHP D;  4WHP A;  3MI5 A;  3PCB A;  3MV4 M;  4WHR B;  3HHY A;  3T63 M;  3PCN A;  1YKL B;  4ILV A;  4WHQ B;  3O32 A;  3PCJ A;  3N9T A;  3HGI A;  3PCD A;  1EOC A;  2BUZ B;  1S9A A;  3LMX A;  3PCC A;  2BUT A;  3LKT M;  3MI1 A;  3PCI M;  3PCA M;  3PCE A;  1DLT A;  2BUR A;  3T67 A;  4WHS A;  3MV6 M;  3I4Y A;  2XSR A;  3PCF A;  1EOC B;  1DLQ A;  3MFL M;  2BUT B;  3PCM M;  1YKM A;  2BUW A;  2BUQ A;  3O5U A;  3HJQ A;  2BUV A;  1YKK A;  2BUR B;  3LXV M;  2PCD M;  4WHS B;  4WHR F; 
#chains in the Genus database with same CATH homology
 2BUX A;  3PCL A;  3I51 A;  3PCH M;  1DMH A;  2BUY A;  1YKM B;  2AZQ A;  2BUQ B;  1YKN A;  2BUW B;  3O6R A;  3MI5 M;  3PCK A;  3PCB M;  4WHS D;  2BUV B;  1YKP A;  1YKK B;  3PCG A;  2BUU A;  3PCN M;  2BV0 A;  3HHX A;  3PCJ M;  2BUX B;  3PCD M;  1EOB A;  1TMX A;  2BUY B;  3LMX M;  3PCC M;  1YKN B;  3HJ8 A;  3MV4 A;  3T63 A;  1EO9 A;  3MI1 M;  1YKP B;  3PCE M;  1EO2 A;  2BUU B;  3TH1 A;  2BV0 B;  2BUM A;  3HKP A;  3PCF M;  1EOB B;  3HJS A;  3LKT A;  1DLM A;  1EOA A;  3PCI A;  3PCA A;  1EO9 B;  2XSU A;  1EO2 B;  1YKO A;  4WHO D;  3T67 M;  4WHO A;  3MV6 A;  2BUM B;  3PCL M;  3MFL A;  5TD3 A;  3PCM A;  4WHP B;  1EOA B;  4WHR A;  3LXV A;  2PCD A;  2XSV A;  2BOY A;  3PCK M;  1YKL A;  3PCG M;  3I4V A;  3O6J A;  4WHQ A;  1YKO B;  4WHO B;  2BUZ A;  3PCH A;  4ILT A;  4WHP D;  4WHP A;  3MI5 A;  3PCB A;  3MV4 M;  4WHR B;  3HHY A;  3T63 M;  3PCN A;  1YKL B;  4ILV A;  4WHQ B;  3O32 A;  3PCJ A;  3N9T A;  3HGI A;  3PCD A;  1EOC A;  2BUZ B;  1S9A A;  3LMX A;  3PCC A;  2BUT A;  3LKT M;  3MI1 A;  3PCI M;  3PCA M;  3PCE A;  1DLT A;  2BUR A;  3T67 A;  4WHS A;  3MV6 M;  3I4Y A;  2XSR A;  3PCF A;  1EOC B;  1DLQ A;  3MFL M;  2BUT B;  3PCM M;  1YKM A;  2BUW A;  2BUQ A;  3O5U A;  3HJQ A;  2BUV A;  1YKK A;  2BUR B;  3LXV M;  2PCD M;  4WHS B;  4WHR F;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1EOAB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations