1EOB | Genus

Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	43
sequence length	202
structure length	202
Chain Sequence	ELKETPSQTGGPYVHIGLLPKQANIEVFEHNLDNNLVQDNTQGQRIRLEGQVFDGLGLPLRDVLIEIWQADTNGVYPSQADTQGKQVDPNFLGWGRTGADFGTGFWSFNTIKPGAVPGRKGSTQAPHISLIIFARGINIGLHTRVYFDDEAEANAKDPVLNSIEWATRRQTLVAKREERDGEVVYRFDIRIQGENETVFFDI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

loadScript /static/js/j2s/core/package.js

loadScript /static/js/j2s/core/corejmol.z.js

loadScript /static/js/j2s/core/corescript.z.js

JSmol exec jmolApplet0 start applet null

Jmol JavaScript applet jmolApplet0__542152579169053__ initializing

Jmol getValue debug null

Jmol getValue logLevel null

Jmol getValue allowjavascript null

AppletRegistry.checkIn(jmolApplet0__542152579169053__)

vwrOptions:

{ "name":"jmolApplet0","applet":true,"documentBase":"https://genus.fuw.edu.pl/view/1EOB/A/","platform":"J.awtjs2d.Platform","fullName":"jmolApplet0__542152579169053__","codePath":"https:/static/js/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"542152579169053","bgcolor":"white" }

setting document base to "https://genus.fuw.edu.pl/view/1EOB/A/"

Jmol Version: 14.29.13 2018-04-17 17:17

java.vendor: Java2Script (HTML5)

java.version: 2018-01-28 23:38:52 (JSmol/j2s)

os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)

Access: ALL

memory: 0.0/0.0

processors available: 1

useCommandThread: false

appletId:jmolApplet0 (signed)

Jmol getValue emulate null

defaults = "Jmol"

Jmol getValue boxbgcolor null

Jmol getValue bgcolor white

backgroundColor = "white"

Jmol getValue ANIMFRAMECallback null

Jmol getValue APPLETREADYCallback Jmol._readyCallback

APPLETREADYCallback = "Jmol._readyCallback"

callback set for APPLETREADYCallback Jmol._readyCallback APPLETREADY

Jmol getValue ATOMMOVEDCallback null

Jmol getValue AUDIOCallback null

Jmol getValue CLICKCallback null

Jmol getValue DRAGDROPCallback null

Jmol getValue ECHOCallback null

Jmol getValue ERRORCallback null

Jmol getValue EVALCallback null

Jmol getValue HOVERCallback null

Jmol getValue IMAGECallback null

Jmol getValue LOADSTRUCTCallback null

Jmol getValue MEASURECallback null

Jmol getValue MESSAGECallback null

Jmol getValue MINIMIZATIONCallback null

Jmol getValue SERVICECallback null

Jmol getValue PICKCallback null

Jmol getValue RESIZECallback null

Jmol getValue SCRIPTCallback null

Jmol getValue SYNCCallback null

Jmol getValue STRUCTUREMODIFIEDCallback null

Jmol getValue doTranslate null

language=en_US

Jmol getValue popupMenu null

Jmol getValue script null

Jmol getValue loadInline null

Jmol getValue load null

Jmol applet jmolApplet0__542152579169053__ ready

script 1 started

platformSpeed = 8

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of Acinetobacter strain ADP1 protocatechuate 3, 4-dioxygenase at 2.2 A resolution: implications for the mechanism of an intradiol dioxygenase. pubmed doi rcsb
molecule keywords	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags	Oxidoreductase
source organism	Acinetobacter sp.
total genus	43
structure length	202
sequence length	202
ec nomenclature	ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date	2000-03-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	1eobA00

3HJSA 3PCFM 3HHXA 2BUVA 3I51A 3PCDM 1YKNB 3PCIM 1DLTA 3PCEM 3PCAM 3MI5A 1YKLA 3PCKA 3PCNM 1EOAA 1EOCB 3PCJA 3MFLM 3O6JA 2XSRA 3PCFA 3HJ8A 1EO2A 3PCBM 3PCDA 2BV0B 3T63M 3MI1M 3PCIA 1YKOB 1EOBA 2BUUA 3PCEA 3PCAA 4WHPD 2BUZA 3PCNA 2BUQB 3T67M 2BURA 1YKMA 1S9AA 2BUYA 4WHOD 2BUWB 3MV4M 1DMHA 1DLMA 3MFLA 3LXVA 2BUMA 3MV6M 4WHQA 2PCDM 3PCBA 4WHRB 3T63A 2AZQA 3MI1A 1EOAB 1YKKB 3T67A 3O5UA 4WHSA 4WHOA 3MV4A 3PCMM 3O32A 1EO9A 2PCDA 3LMXM 1EOBB 1YKNA 3PCLM 1YKPB 2BUZB 3PCGM 2BUXB 2BURB 1EOCA 3PCCM 2BUVB 2BUTA 3HHYA 3PCMA 3I4YA 3PCHM 1YKLB 3LMXA 2BV0A 3PCLA 4WHPA 1YKOA 3PCGA 3HKPA 4WHSB 4ILVA 3LKTM 1EO2B 3PCCA 3MV6A 3TH1A 4ILTA 3I4VA 3HGIA 3PCHA 1EO9B 2BUUB 3HJQA 4WHRA 2BOYA 3N9TA 1YKMB 2BUYB 1YKKA 2BUMB 2BUTB 3LKTA 4WHQB 3LXVM 4WHRF 1TMXA 2XSVA 3MI5M 3PCKM 5TD3A 2XSUA 4WHPB 3O6RA 2BUQA 1YKPA 4WHOB 1DLQA 2BUXA 2BUWA 4WHSD 3PCJM
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3HJS A;  3PCF M;  3HHX A;  2BUV A;  3I51 A;  3PCD M;  1YKN B;  3PCI M;  1DLT A;  3PCE M;  3PCA M;  3MI5 A;  1YKL A;  3PCK A;  3PCN M;  1EOA A;  1EOC B;  3PCJ A;  3MFL M;  3O6J A;  2XSR A;  3PCF A;  3HJ8 A;  1EO2 A;  3PCB M;  3PCD A;  2BV0 B;  3T63 M;  3MI1 M;  3PCI A;  1YKO B;  1EOB A;  2BUU A;  3PCE A;  3PCA A;  4WHP D;  2BUZ A;  3PCN A;  2BUQ B;  3T67 M;  2BUR A;  1YKM A;  1S9A A;  2BUY A;  4WHO D;  2BUW B;  3MV4 M;  1DMH A;  1DLM A;  3MFL A;  3LXV A;  2BUM A;  3MV6 M;  4WHQ A;  2PCD M;  3PCB A;  4WHR B;  3T63 A;  2AZQ A;  3MI1 A;  1EOA B;  1YKK B;  3T67 A;  3O5U A;  4WHS A;  4WHO A;  3MV4 A;  3PCM M;  3O32 A;  1EO9 A;  2PCD A;  3LMX M;  1EOB B;  1YKN A;  3PCL M;  1YKP B;  2BUZ B;  3PCG M;  2BUX B;  2BUR B;  1EOC A;  3PCC M;  2BUV B;  2BUT A;  3HHY A;  3PCM A;  3I4Y A;  3PCH M;  1YKL B;  3LMX A;  2BV0 A;  3PCL A;  4WHP A;  1YKO A;  3PCG A;  3HKP A;  4WHS B;  4ILV A;  3LKT M;  1EO2 B;  3PCC A;  3MV6 A;  3TH1 A;  4ILT A;  3I4V A;  3HGI A;  3PCH A;  1EO9 B;  2BUU B;  3HJQ A;  4WHR A;  2BOY A;  3N9T A;  1YKM B;  2BUY B;  1YKK A;  2BUM B;  2BUT B;  3LKT A;  4WHQ B;  3LXV M;  4WHR F;  1TMX A;  2XSV A;  3MI5 M;  3PCK M;  5TD3 A;  2XSU A;  4WHP B;  3O6R A;  2BUQ A;  1YKP A;  4WHO B;  1DLQ A;  2BUX A;  2BUW A;  4WHS D;  3PCJ M; 
#chains in the Genus database with same CATH topology
 3HJS A;  3PCF M;  3HHX A;  2BUV A;  3I51 A;  3PCD M;  1YKN B;  3PCI M;  1DLT A;  3PCE M;  3PCA M;  3MI5 A;  1YKL A;  3PCK A;  3PCN M;  1EOA A;  1EOC B;  3PCJ A;  3MFL M;  3O6J A;  2XSR A;  3PCF A;  3HJ8 A;  1EO2 A;  3PCB M;  3PCD A;  2BV0 B;  3T63 M;  3MI1 M;  3PCI A;  1YKO B;  1EOB A;  2BUU A;  3PCE A;  3PCA A;  4WHP D;  2BUZ A;  3PCN A;  2BUQ B;  3T67 M;  2BUR A;  1YKM A;  1S9A A;  2BUY A;  4WHO D;  2BUW B;  3MV4 M;  1DMH A;  1DLM A;  3MFL A;  3LXV A;  2BUM A;  3MV6 M;  4WHQ A;  2PCD M;  3PCB A;  4WHR B;  3T63 A;  2AZQ A;  3MI1 A;  1EOA B;  1YKK B;  3T67 A;  3O5U A;  4WHS A;  4WHO A;  3MV4 A;  3PCM M;  3O32 A;  1EO9 A;  2PCD A;  3LMX M;  1EOB B;  1YKN A;  3PCL M;  1YKP B;  2BUZ B;  3PCG M;  2BUX B;  2BUR B;  1EOC A;  3PCC M;  2BUV B;  2BUT A;  3HHY A;  3PCM A;  3I4Y A;  3PCH M;  1YKL B;  3LMX A;  2BV0 A;  3PCL A;  4WHP A;  1YKO A;  3PCG A;  3HKP A;  4WHS B;  4ILV A;  3LKT M;  1EO2 B;  3PCC A;  3MV6 A;  3TH1 A;  4ILT A;  3I4V A;  3HGI A;  3PCH A;  1EO9 B;  2BUU B;  3HJQ A;  4WHR A;  2BOY A;  3N9T A;  1YKM B;  2BUY B;  1YKK A;  2BUM B;  2BUT B;  3LKT A;  4WHQ B;  3LXV M;  4WHR F;  1TMX A;  2XSV A;  3MI5 M;  3PCK M;  5TD3 A;  2XSU A;  4WHP B;  3O6R A;  2BUQ A;  1YKP A;  4WHO B;  1DLQ A;  2BUX A;  2BUW A;  4WHS D;  3PCJ M; 
#chains in the Genus database with same CATH homology
 3HJS A;  3PCF M;  3HHX A;  2BUV A;  3I51 A;  3PCD M;  1YKN B;  3PCI M;  1DLT A;  3PCE M;  3PCA M;  3MI5 A;  1YKL A;  3PCK A;  3PCN M;  1EOA A;  1EOC B;  3PCJ A;  3MFL M;  3O6J A;  2XSR A;  3PCF A;  3HJ8 A;  1EO2 A;  3PCB M;  3PCD A;  2BV0 B;  3T63 M;  3MI1 M;  3PCI A;  1YKO B;  1EOB A;  2BUU A;  3PCE A;  3PCA A;  4WHP D;  2BUZ A;  3PCN A;  2BUQ B;  3T67 M;  2BUR A;  1YKM A;  1S9A A;  2BUY A;  4WHO D;  2BUW B;  3MV4 M;  1DMH A;  1DLM A;  3MFL A;  3LXV A;  2BUM A;  3MV6 M;  4WHQ A;  2PCD M;  3PCB A;  4WHR B;  3T63 A;  2AZQ A;  3MI1 A;  1EOA B;  1YKK B;  3T67 A;  3O5U A;  4WHS A;  4WHO A;  3MV4 A;  3PCM M;  3O32 A;  1EO9 A;  2PCD A;  3LMX M;  1EOB B;  1YKN A;  3PCL M;  1YKP B;  2BUZ B;  3PCG M;  2BUX B;  2BUR B;  1EOC A;  3PCC M;  2BUV B;  2BUT A;  3HHY A;  3PCM A;  3I4Y A;  3PCH M;  1YKL B;  3LMX A;  2BV0 A;  3PCL A;  4WHP A;  1YKO A;  3PCG A;  3HKP A;  4WHS B;  4ILV A;  3LKT M;  1EO2 B;  3PCC A;  3MV6 A;  3TH1 A;  4ILT A;  3I4V A;  3HGI A;  3PCH A;  1EO9 B;  2BUU B;  3HJQ A;  4WHR A;  2BOY A;  3N9T A;  1YKM B;  2BUY B;  1YKK A;  2BUM B;  2BUT B;  3LKT A;  4WHQ B;  3LXV M;  4WHR F;  1TMX A;  2XSV A;  3MI5 M;  3PCK M;  5TD3 A;  2XSU A;  4WHP B;  3O6R A;  2BUQ A;  1YKP A;  4WHO B;  1DLQ A;  2BUX A;  2BUW A;  4WHS D;  3PCJ M;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

1EOBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations