1G9YA

Homing endonuclease i-crei / dna substrate complex with calcium
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
152
structure length
152
Chain Sequence
NTKYNKEFLLYLAGFVDGDGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (52-62)EMPTYAH5 (119-135)S1 (21-29)TI2 (33-36)TI1 (30-33)S2 (37-48)S3 (66-70)TII'1 (70-73)AH4 (98-116)TIV1 (95-98)TIV2 (138-141)AH6 (145-149)TI3 (149-152)AH1 (7-20)3H1 (49-51)S4 (73-78)AH3 (81-91)3H2 (92-94)Updating...
connected with : NaN
molecule tags Hydrolase/dna
source organism Chlamydomonas reinhardtii
publication title The homing endonuclease I-CreI uses three metals, one of which is shared between the two active sites.
pubmed doi rcsb
molecule keywords 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*AP*CP*GP*AP*CP*GP*
total genus 49
structure length 152
sequence length 152
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2000-11-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1g9yA00
4UNBA 2FLDA 5A0WA 5A77A 4AADA 3OOLA 3MX9A 4UT0A 4LQ0A 2QOJZ 2I3PA 3R7PA 2VBNB 5AKFA 4AAEA 3HYIA 2I3QA 3HYJA 4AQXA 1N3FA 5A74A 1DFAA 1P8KZ 2VBLB 5AK9A 4UN8G 4D6NA 3MXBA 1T9JA 4UN8A 5A72A 1R7MA 1G9ZA 1BP7A 4AAFA 4YITA 4UN7G 5E5OA 2VBNA 4EFJA 3FD2A 1DQ3A 1G9YA 3OORA 1LWSA 1JVAA 2VS7A 4UN7A 1B24A 2DCHX 3KO2A 2VBLA 1MOWA 5AKMA 4Z1XA 5E63A 1U0DA 2VBOB 2O7MA 1UM2A 5E5SA 1LWTA 4UN9G 1VDEA 5A0MB 2VS8A 4AQUA 4YHXA 1AF5A 2AB5A 4UNAA 3EH8A 2CW8A 3QQYA 2CW7A 2VBJB 4D6OA 3MXAA 4YISA 4UNCA 4Z20A 2VBJA 4LOXA 3MISA 3C0WA 4Z1ZA 3UVFA 3C0XA 4AABA 2EX5A 3MIPA 2VBOA 3E54A 1T9IA 4AAGA 5E67A 1N3EA 3MXBB 5A0MA 2XE0B 1M5XA 5AKNA 4UN9A 5A78A 2XE0A 1U0CA 1EF0A
chains in the Genus database with same CATH superfamily
4UNBA 2FLDA 5A0WA 5A77A 4AADA 3OOLA 3MX9A 4UT0A 4LQ0A 2QOJZ 2I3PA 3R7PA 2VBNB 5AKFA 4AAEA 3HYIA 2I3QA 3HYJA 4AQXA 1N3FA 5A74A 1DFAA 1P8KZ 2VBLB 5AK9A 4UN8G 4D6NA 3MXBA 1T9JA 4UN8A 5A72A 1R7MA 1G9ZA 1BP7A 2F4LA 4AAFA 4YITA 4UN7G 5E5OA 2VBNA 4EFJA 3FD2A 1DQ3A 1G9YA 3OORA 1LWSA 1JVAA 2VS7A 4UN7A 1B24A 2DCHX 3KO2A 2VBLA 1MOWA 5AKMA 4Z1XA 5E63A 1U0DA 2VBOB 2O7MA 1UM2A 5E5SA 1LWTA 4UN9G 1VDEA 5A0MB 2VS8A 4AQUA 4YHXA 1AF5A 2AB5A 4UNAA 3EH8A 2CW8A 3QQYA 2CW7A 2VBJB 4KZSA 4D6OA 3MXAA 4YISA 4UNCA 4Z20A 2VBJA 4LOXA 3MISA 3C0WA 4Z1ZA 3UVFA 3C0XA 4AABA 2EX5A 3MIPA 2VBOA 3E54A 1T9IA 4AAGA 5E67A 1N3EA 3MXBB 5A0MA 2XE0B 1M5XA 5AKNA 4UN9A 5A78A 2XE0A 1U0CA 1EF0A
chains in the Genus database with same CATH topology
4UNBA 2FLDA 5A0WA 5A77A 4AADA 3OOLA 3MX9A 4UT0A 4LQ0A 2QOJZ 2I3PA 3R7PA 2VBNB 5AKFA 4AAEA 3HYIA 2I3QA 3HYJA 4AQXA 1N3FA 5A74A 1DFAA 1P8KZ 2VBLB 5AK9A 4UN8G 4D6NA 3MXBA 1T9JA 4UN8A 5A72A 1R7MA 1G9ZA 1BP7A 4AAFA 4YITA 4UN7G 5E5OA 2VBNA 4EFJA 3FD2A 1DQ3A 1G9YA 3OORA 1LWSA 1JVAA 2VS7A 4UN7A 1B24A 2DCHX 3KO2A 2VBLA 1MOWA 5AKMA 4Z1XA 5E63A 1U0DA 2VBOB 2O7MA 1UM2A 5E5SA 1LWTA 4UN9G 1VDEA 5A0MB 2VS8A 4AQUA 4YHXA 1AF5A 2AB5A 4UNAA 3EH8A 2CW8A 3QQYA 2CW7A 2VBJB 4D6OA 3MXAA 4YISA 4UNCA 4Z20A 2VBJA 4LOXA 3MISA 3C0WA 4Z1ZA 3UVFA 3C0XA 4AABA 2EX5A 3MIPA 2VBOA 3E54A 1T9IA 4AAGA 5E67A 1N3EA 3MXBB 5A0MA 2XE0B 1M5XA 5AKNA 4UN9A 5A78A 2XE0A 1U0CA 1EF0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4UNB A;  2FLD A;  5A0W A;  5A77 A;  4AAD A;  3OOL A;  3MX9 A;  4UT0 A;  4LQ0 A;  2QOJ Z;  2I3P A;  3R7P A;  2VBN B;  5AKF A;  4AAE A;  3HYI A;  2I3Q A;  3HYJ A;  4AQX A;  1N3F A;  5A74 A;  1DFA A;  1P8K Z;  2VBL B;  5AK9 A;  4UN8 G;  4D6N A;  3MXB A;  1T9J A;  4UN8 A;  5A72 A;  1R7M A;  1G9Z A;  1BP7 A;  4AAF A;  4YIT A;  4UN7 G;  5E5O A;  2VBN A;  4EFJ A;  3FD2 A;  1DQ3 A;  1G9Y A;  3OOR A;  1LWS A;  1JVA A;  2VS7 A;  4UN7 A;  1B24 A;  2DCH X;  3KO2 A;  2VBL A;  1MOW A;  5AKM A;  4Z1X A;  5E63 A;  1U0D A;  2VBO B;  2O7M A;  1UM2 A;  5E5S A;  1LWT A;  4UN9 G;  1VDE A;  5A0M B;  2VS8 A;  4AQU A;  4YHX A;  1AF5 A;  2AB5 A;  4UNA A;  3EH8 A;  2CW8 A;  3QQY A;  2CW7 A;  2VBJ B;  4D6O A;  3MXA A;  4YIS A;  4UNC A;  4Z20 A;  2VBJ A;  4LOX A;  3MIS A;  3C0W A;  4Z1Z A;  3UVF A;  3C0X A;  4AAB A;  2EX5 A;  3MIP A;  2VBO A;  3E54 A;  1T9I A;  4AAG A;  5E67 A;  1N3E A;  3MXB B;  5A0M A;  2XE0 B;  1M5X A;  5AKN A;  4UN9 A;  5A78 A;  2XE0 A;  1U0C A;  1EF0 A; 
#chains in the Genus database with same CATH topology
 4UNB A;  2FLD A;  5A0W A;  5A77 A;  4AAD A;  3OOL A;  3MX9 A;  4UT0 A;  4LQ0 A;  2QOJ Z;  2I3P A;  3R7P A;  2VBN B;  5AKF A;  4AAE A;  3HYI A;  2I3Q A;  3HYJ A;  4AQX A;  1N3F A;  5A74 A;  1DFA A;  1P8K Z;  2VBL B;  5AK9 A;  4UN8 G;  4D6N A;  3MXB A;  1T9J A;  4UN8 A;  5A72 A;  1R7M A;  1G9Z A;  1BP7 A;  2F4L A;  4AAF A;  4YIT A;  4UN7 G;  5E5O A;  2VBN A;  4EFJ A;  3FD2 A;  1DQ3 A;  1G9Y A;  3OOR A;  1LWS A;  1JVA A;  2VS7 A;  4UN7 A;  1B24 A;  2DCH X;  3KO2 A;  2VBL A;  1MOW A;  5AKM A;  4Z1X A;  5E63 A;  1U0D A;  2VBO B;  2O7M A;  1UM2 A;  5E5S A;  1LWT A;  4UN9 G;  1VDE A;  5A0M B;  2VS8 A;  4AQU A;  4YHX A;  1AF5 A;  2AB5 A;  4UNA A;  3EH8 A;  2CW8 A;  3QQY A;  2CW7 A;  2VBJ B;  4KZS A;  4D6O A;  3MXA A;  4YIS A;  4UNC A;  4Z20 A;  2VBJ A;  4LOX A;  3MIS A;  3C0W A;  4Z1Z A;  3UVF A;  3C0X A;  4AAB A;  2EX5 A;  3MIP A;  2VBO A;  3E54 A;  1T9I A;  4AAG A;  5E67 A;  1N3E A;  3MXB B;  5A0M A;  2XE0 B;  1M5X A;  5AKN A;  4UN9 A;  5A78 A;  2XE0 A;  1U0C A;  1EF0 A; 
#chains in the Genus database with same CATH homology
 4UNB A;  2FLD A;  5A0W A;  5A77 A;  4AAD A;  3OOL A;  3MX9 A;  4UT0 A;  4LQ0 A;  2QOJ Z;  2I3P A;  3R7P A;  2VBN B;  5AKF A;  4AAE A;  3HYI A;  2I3Q A;  3HYJ A;  4AQX A;  1N3F A;  5A74 A;  1DFA A;  1P8K Z;  2VBL B;  5AK9 A;  4UN8 G;  4D6N A;  3MXB A;  1T9J A;  4UN8 A;  5A72 A;  1R7M A;  1G9Z A;  1BP7 A;  4AAF A;  4YIT A;  4UN7 G;  5E5O A;  2VBN A;  4EFJ A;  3FD2 A;  1DQ3 A;  1G9Y A;  3OOR A;  1LWS A;  1JVA A;  2VS7 A;  4UN7 A;  1B24 A;  2DCH X;  3KO2 A;  2VBL A;  1MOW A;  5AKM A;  4Z1X A;  5E63 A;  1U0D A;  2VBO B;  2O7M A;  1UM2 A;  5E5S A;  1LWT A;  4UN9 G;  1VDE A;  5A0M B;  2VS8 A;  4AQU A;  4YHX A;  1AF5 A;  2AB5 A;  4UNA A;  3EH8 A;  2CW8 A;  3QQY A;  2CW7 A;  2VBJ B;  4D6O A;  3MXA A;  4YIS A;  4UNC A;  4Z20 A;  2VBJ A;  4LOX A;  3MIS A;  3C0W A;  4Z1Z A;  3UVF A;  3C0X A;  4AAB A;  2EX5 A;  3MIP A;  2VBO A;  3E54 A;  1T9I A;  4AAG A;  5E67 A;  1N3E A;  3MXB B;  5A0M A;  2XE0 B;  1M5X A;  5AKN A;  4UN9 A;  5A78 A;  2XE0 A;  1U0C A;  1EF0 A; 
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