1IPIA

Crystal structure of the archaeal holliday junction resolvase hjc from pyrococcus furiosus form ii
Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
114
structure length
114
Chain Sequence
MYRKGAQAERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGGIPVLAVKFLNVGWRFIEVSPKIEKFVFTPSSGVSLEVLLG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
AH1 (6-19)S1 (22-25)S5 (75-82)S6 (86-91)TIV1 (26-29)TIV2 (29-32)EMPTYAH2 (59-72)S3 (42-50)TII2 (82-85)S4 (55-57)TI2 (102-105)AH3 (109-113)TII1 (3-6)S2 (34-37)TIV3 (38-41)S7 (99-101)TI1 (93-96)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Pyrococcus furiosus
publication title Dissection of the regional roles of the archaeal Holliday junction resolvase Hjc by structural and mutational analyses.
pubmed doi rcsb
molecule keywords HOLLIDAY JUNCTION RESOLVASE
total genus 30
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2001-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01870 Hjc Archaeal holliday junction resolvase (hjc)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 1ipiA00
4QBOA 1Y88A 1F1ZA 4TKKA 2EO0A 4QBLA 2OKFA 2WJ0A 2CV8A 1IPIA 2FCOA 2VLDA 3AJVA 3IEYA 1R0VA 2OSTA 2ZYZA 3P1ZB 3P1YA 2GW6A 2GJWA 1ZP7A 2WIWA 1A79A 1R11A 1HH1A 3AJVB 1OB8A 3DNXA 1OB9A 2WCZA 2WCWA 1RZNA 5FDKA 1GEFA 3P1ZA 3FOVA 2ZYZB 4TKDA 2WIZA 1Y1OA 4QBNA 2INBA 1T0FA 1RLVA 1XMXA
chains in the Genus database with same CATH superfamily
4QBOA 1Y88A 4ZQUA 1F1ZA 2CZRA 4TKKA 2EO0A 4QBLA 2OKFA 2WJ0A 2CV8A 1IPIA 2FCOA 2VLDA 2VS1A 2W8MA 3AJVA 3IEYA 2BH2A 1R0VA 2OSTA 4E6ZA 2ZYZA 4DAVA 3IF0X 3P1ZB 3P1YA 2GW6A 4DA2A 2GJWA 4LQEA 2FKCA 2Z0RA 1UWVA 2FKHB 1ZP7A 2IXSA 4EV1A 4G6UA 2WIWA 1A79A 1R11A 1HH1A 2JJQA 3AJVB 1OB8A 3BT7A 3DNXA 1OB9A 4G6VA 3IEYB 2WCZA 2WCWA 1RZNA 5FDKA 2FLCA 1YNMA 1GEFA 2DBSA 3P1ZA 3FOVA 2ZYZB 4DAPA 4TKDA 2WIZA 2FL3A 1Y1OA 4QBNA 2INBA 1T0FA 1RLVA 1XMXA
chains in the Genus database with same CATH topology
4QBOA 1Y88A 4ZQUA 1F1ZA 2CZRA 4TKKA 2EO0A 4QBLA 2OKFA 2WJ0A 2CV8A 1IPIA 2FCOA 2VLDA 2VS1A 2W8MA 3AJVA 3IEYA 2BH2A 1R0VA 2OSTA 4E6ZA 2ZYZA 4DAVA 3IF0X 3P1ZB 3P1YA 2GW6A 4DA2A 2GJWA 4LQEA 2FKCA 2Z0RA 1UWVA 2FKHB 1ZP7A 2IXSA 4EV1A 4G6UA 2WIWA 1A79A 1R11A 1HH1A 2JJQA 3AJVB 1OB8A 3BT7A 3DNXA 1OB9A 4G6VA 3IEYB 2WCZA 2WCWA 1RZNA 5FDKA 2FLCA 1YNMA 1GEFA 2DBSA 3P1ZA 3FOVA 2ZYZB 4DAPA 4TKDA 2WIZA 2FL3A 1Y1OA 4QBNA 2INBA 1T0FA 1RLVA 1XMXA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4QBO A;  1Y88 A;  1F1Z A;  4TKK A;  2EO0 A;  4QBL A;  2OKF A;  2WJ0 A;  2CV8 A;  1IPI A;  2FCO A;  2VLD A;  3AJV A;  3IEY A;  1R0V A;  2OST A;  2ZYZ A;  3P1Z B;  3P1Y A;  2GW6 A;  2GJW A;  1ZP7 A;  2WIW A;  1A79 A;  1R11 A;  1HH1 A;  3AJV B;  1OB8 A;  3DNX A;  1OB9 A;  2WCZ A;  2WCW A;  1RZN A;  5FDK A;  1GEF A;  3P1Z A;  3FOV A;  2ZYZ B;  4TKD A;  2WIZ A;  1Y1O A;  4QBN A;  2INB A;  1T0F A;  1RLV A;  1XMX A; 
#chains in the Genus database with same CATH topology
 4QBO A;  1Y88 A;  4ZQU A;  1F1Z A;  2CZR A;  4TKK A;  2EO0 A;  4QBL A;  2OKF A;  2WJ0 A;  2CV8 A;  1IPI A;  2FCO A;  2VLD A;  2VS1 A;  2W8M A;  3AJV A;  3IEY A;  2BH2 A;  1R0V A;  2OST A;  4E6Z A;  2ZYZ A;  4DAV A;  3IF0 X;  3P1Z B;  3P1Y A;  2GW6 A;  4DA2 A;  2GJW A;  4LQE A;  2FKC A;  2Z0R A;  1UWV A;  2FKH B;  1ZP7 A;  2IXS A;  4EV1 A;  4G6U A;  2WIW A;  1A79 A;  1R11 A;  1HH1 A;  2JJQ A;  3AJV B;  1OB8 A;  3BT7 A;  3DNX A;  1OB9 A;  4G6V A;  3IEY B;  2WCZ A;  2WCW A;  1RZN A;  5FDK A;  2FLC A;  1YNM A;  1GEF A;  2DBS A;  3P1Z A;  3FOV A;  2ZYZ B;  4DAP A;  4TKD A;  2WIZ A;  2FL3 A;  1Y1O A;  4QBN A;  2INB A;  1T0F A;  1RLV A;  1XMX A; 
#chains in the Genus database with same CATH homology
 4QBO A;  1Y88 A;  4ZQU A;  1F1Z A;  2CZR A;  4TKK A;  2EO0 A;  4QBL A;  2OKF A;  2WJ0 A;  2CV8 A;  1IPI A;  2FCO A;  2VLD A;  2VS1 A;  2W8M A;  3AJV A;  3IEY A;  2BH2 A;  1R0V A;  2OST A;  4E6Z A;  2ZYZ A;  4DAV A;  3IF0 X;  3P1Z B;  3P1Y A;  2GW6 A;  4DA2 A;  2GJW A;  4LQE A;  2FKC A;  2Z0R A;  1UWV A;  2FKH B;  1ZP7 A;  2IXS A;  4EV1 A;  4G6U A;  2WIW A;  1A79 A;  1R11 A;  1HH1 A;  2JJQ A;  3AJV B;  1OB8 A;  3BT7 A;  3DNX A;  1OB9 A;  4G6V A;  3IEY B;  2WCZ A;  2WCW A;  1RZN A;  5FDK A;  2FLC A;  1YNM A;  1GEF A;  2DBS A;  3P1Z A;  3FOV A;  2ZYZ B;  4DAP A;  4TKD A;  2WIZ A;  2FL3 A;  1Y1O A;  4QBN A;  2INB A;  1T0F A;  1RLV A;  1XMX A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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