4QBOA

Vrr_nuc domain
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
92
structure length
92
Chain Sequence
GSMRTEKDIENYLKKKTKGLCLKFTSPGTIGVPDRIVVMNTGTFFVEVKAPGKKPRPSQVAMHKKIKEAGQHVWVVDSYESVDMALKEMENW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Nuclease
publication title FAN1 activity on asymmetric repair intermediates is mediated by an atypical monomeric virus-type replication-repair nuclease domain.
pubmed doi rcsb
source organism Streptococcus phage p9
total genus 25
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2014-05-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08774 VRR_NUC VRR-NUC domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 4qboA00
1OB8A 2WCZA 3FOVA 4QBNA 1ZP7A 1F1ZA 5FDKA 1IPIA 4TKDA 4TKKA 1Y1OA 4QBLA 2CV8A 1T0FA 2ZYZA 2WIZA 2OKFA 1Y88A 2ZYZB 1GEFA 1RLVA 2EO0A 3P1ZA 2GW6A 3P1ZB 1XMXA 1R0VA 4QBOA 2WCWA 2INBA 2VLDA 3P1YA 2OSTA 3AJVA 3AJVB 3DNXA 2WJ0A 2FCOA 1A79A 2GJWA 1HH1A 1R11A 1OB9A 1RZNA 2WIWA 3IEYA
chains in the Genus database with same CATH superfamily
1OB8A 2WCZA 3FOVA 4QBNA 1ZP7A 1F1ZA 4DAVA 4ZQUA 2FKHB 5FDKA 2BH2A 2FKCA 1IPIA 4TKDA 2FLCA 4TKKA 1Y1OA 4DA2A 4QBLA 2CV8A 1T0FA 2ZYZA 3IF0X 2OKFA 4LQEA 4EV1A 2WIZA 1Y88A 1UWVA 2ZYZB 1GEFA 1RLVA 4G6UA 2FL3A 2EO0A 3P1ZA 2GW6A 3P1ZB 1XMXA 1R0VA 2IXSA 2CZRA 2INBA 2WCWA 2VLDA 3P1YA 4QBOA 2OSTA 3BT7A 3AJVA 4DAPA 3AJVB 3DNXA 4E6ZA 2FCOA 1A79A 2Z0RA 1YNMA 2WJ0A 2GJWA 1HH1A 1R11A 2W8MA 1OB9A 1RZNA 2JJQA 2VS1A 2WIWA 3IEYA 3IEYB 2DBSA 4G6VA
chains in the Genus database with same CATH topology
1OB8A 2WCZA 3FOVA 4QBNA 1ZP7A 1F1ZA 4DAVA 4ZQUA 2FKHB 5FDKA 2BH2A 2FKCA 1IPIA 4TKDA 2FLCA 4TKKA 1Y1OA 4DA2A 4QBLA 2CV8A 1T0FA 2ZYZA 3IF0X 2OKFA 4LQEA 4EV1A 2WIZA 1Y88A 1UWVA 2ZYZB 1GEFA 1RLVA 4G6UA 2FL3A 2EO0A 3P1ZA 2GW6A 3P1ZB 1XMXA 1R0VA 2IXSA 2CZRA 2INBA 2WCWA 2VLDA 3P1YA 4QBOA 2OSTA 3BT7A 3AJVA 4DAPA 3AJVB 3DNXA 4E6ZA 2FCOA 1A79A 2Z0RA 1YNMA 2WJ0A 2GJWA 1HH1A 1R11A 2W8MA 1OB9A 1RZNA 2JJQA 2VS1A 2WIWA 3IEYA 3IEYB 2DBSA 4G6VA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OB8 A;  2WCZ A;  3FOV A;  4QBN A;  1ZP7 A;  1F1Z A;  5FDK A;  1IPI A;  4TKD A;  4TKK A;  1Y1O A;  4QBL A;  2CV8 A;  1T0F A;  2ZYZ A;  2WIZ A;  2OKF A;  1Y88 A;  2ZYZ B;  1GEF A;  1RLV A;  2EO0 A;  3P1Z A;  2GW6 A;  3P1Z B;  1XMX A;  1R0V A;  4QBO A;  2WCW A;  2INB A;  2VLD A;  3P1Y A;  2OST A;  3AJV A;  3AJV B;  3DNX A;  2WJ0 A;  2FCO A;  1A79 A;  2GJW A;  1HH1 A;  1R11 A;  1OB9 A;  1RZN A;  2WIW A;  3IEY A; 
#chains in the Genus database with same CATH topology
 1OB8 A;  2WCZ A;  3FOV A;  4QBN A;  1ZP7 A;  1F1Z A;  4DAV A;  4ZQU A;  2FKH B;  5FDK A;  2BH2 A;  2FKC A;  1IPI A;  4TKD A;  2FLC A;  4TKK A;  1Y1O A;  4DA2 A;  4QBL A;  2CV8 A;  1T0F A;  2ZYZ A;  3IF0 X;  2OKF A;  4LQE A;  4EV1 A;  2WIZ A;  1Y88 A;  1UWV A;  2ZYZ B;  1GEF A;  1RLV A;  4G6U A;  2FL3 A;  2EO0 A;  3P1Z A;  2GW6 A;  3P1Z B;  1XMX A;  1R0V A;  2IXS A;  2CZR A;  2INB A;  2WCW A;  2VLD A;  3P1Y A;  4QBO A;  2OST A;  3BT7 A;  3AJV A;  4DAP A;  3AJV B;  3DNX A;  4E6Z A;  2FCO A;  1A79 A;  2Z0R A;  1YNM A;  2WJ0 A;  2GJW A;  1HH1 A;  1R11 A;  2W8M A;  1OB9 A;  1RZN A;  2JJQ A;  2VS1 A;  2WIW A;  3IEY A;  3IEY B;  2DBS A;  4G6V A; 
#chains in the Genus database with same CATH homology
 1OB8 A;  2WCZ A;  3FOV A;  4QBN A;  1ZP7 A;  1F1Z A;  4DAV A;  4ZQU A;  2FKH B;  5FDK A;  2BH2 A;  2FKC A;  1IPI A;  4TKD A;  2FLC A;  4TKK A;  1Y1O A;  4DA2 A;  4QBL A;  2CV8 A;  1T0F A;  2ZYZ A;  3IF0 X;  2OKF A;  4LQE A;  4EV1 A;  2WIZ A;  1Y88 A;  1UWV A;  2ZYZ B;  1GEF A;  1RLV A;  4G6U A;  2FL3 A;  2EO0 A;  3P1Z A;  2GW6 A;  3P1Z B;  1XMX A;  1R0V A;  2IXS A;  2CZR A;  2INB A;  2WCW A;  2VLD A;  3P1Y A;  4QBO A;  2OST A;  3BT7 A;  3AJV A;  4DAP A;  3AJV B;  3DNX A;  4E6Z A;  2FCO A;  1A79 A;  2Z0R A;  1YNM A;  2WJ0 A;  2GJW A;  1HH1 A;  1R11 A;  2W8M A;  1OB9 A;  1RZN A;  2JJQ A;  2VS1 A;  2WIW A;  3IEY A;  3IEY B;  2DBS A;  4G6V A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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