1P8K | Genus

Total Genus 73

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	73
sequence length	254
structure length	254
Chain Sequence	GSDLTYAYLVGLFEGDGYFSITKKGKYLTYELGIELSIKDVQLIYKIKKILGIGIVSFRKRNEIEMVALRIRDKNHLKSFILPIFEKYPMFSNKQYDYLRFRNALLSGIISLEDLPDYTRSDEPLNSIESIINTSYFSAWLVGFIEAEGCFSVYKLNKDDDYLIASFDIAQRDGDILISAIRKYLSFTTKVYLDKTNCSKLKVTSVRSVENIIKFLQNAPVKLLGNKKLQYLLWLKQLRKISRYSEKIKIPSNY

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Emericella nidulans
publication title	Structural and biochemical analyses of DNA and RNA binding by a bifunctional homing endonuclease and group I intron splicing factor. pubmed doi rcsb
molecule keywords	5'-D(PGPCPGPCPGPCPTPGPAPGPGPAPGPGPTPTPTPC)
total genus	73
structure length	254
sequence length	254
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2003-05-07

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
Z	PF00961	LAGLIDADG_1	LAGLIDADG endonuclease

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	1p8kZ01
3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	1p8kZ02

1DFAA 4UN9A 5AKNA 3HYJA 1U0CA 4YISA 2DCHX 5E63A 1P8KZ 1UM2A 2I3QA 5A0WA 3MX9A 5A72A 2O7MA 4UN8A 2XE0B 3MXBB 2I3PA 1N3EA 1G9ZA 3MXBA 1T9JA 4UN7A 1BP7A 4UT0A 3EH8A 4LOXA 3R7PA 1T9IA 3HYIA 2QOJZ 2CW7A 4UN9G 5AK9A 2VBOB 2VBJB 1EF0A 4YITA 3QQYA 4UNCA 4D6OA 4YHXA 5AKMA 3FD2A 4EFJA 2VBJA 2VBOA 4AADA 4AAFA 1G9YA 4UNAA 4LQ0A 1VDEA 4Z1ZA 1DQ3A 1AF5A 1B24A 3MISA 2VBNA 2FLDA 4UN7G 4UNBA 5A77A 1M5XA 2CW8A 2VBLB 4AABA 2AB5A 1JVAA 4AAEA 1LWSA 3OORA 5A0MB 4AQXA 4Z20A 4UN8G 4D6NA 5AKFA 4Z1XA 2VBNB 3MXAA 1U0DA 1N3FA 2VBLA 1MOWA 2EX5A 4AAGA 5A78A 2VS8A 1R7MA 5A0MA 2VS7A 1LWTA 5E67A 3C0XA 3OOLA 5E5OA 3E54A 4AQUA 3MIPA 3KO2A 2XE0A 5A74A 5E5SA 3UVFA 3C0WA
chains in the Genus database with same CATH superfamily

1DFAA 4UN9A 5AKNA 3HYJA 1U0CA 4YISA 2DCHX 5E63A 1P8KZ 1UM2A 2I3QA 5A0WA 3MX9A 5A72A 2O7MA 4UN8A 2XE0B 3MXBB 2I3PA 1N3EA 1G9ZA 3MXBA 1T9JA 4UN7A 1BP7A 4UT0A 3EH8A 4LOXA 3R7PA 1T9IA 3HYIA 2QOJZ 2CW7A 4UN9G 5AK9A 2VBOB 2VBJB 1EF0A 4YITA 3QQYA 4UNCA 4D6OA 4YHXA 5AKMA 3FD2A 4EFJA 2VBJA 2VBOA 4AADA 4AAFA 1G9YA 4UNAA 4LQ0A 1VDEA 4Z1ZA 4KZSA 1DQ3A 1AF5A 1B24A 3MISA 2VBNA 2FLDA 4UN7G 4UNBA 5A77A 1M5XA 2CW8A 2VBLB 4AABA 2AB5A 1JVAA 4AAEA 1LWSA 3OORA 5A0MB 4AQXA 4Z20A 4UN8G 4D6NA 5AKFA 4Z1XA 2VBNB 3MXAA 1U0DA 1N3FA 2VBLA 1MOWA 2EX5A 4AAGA 5A78A 2VS8A 1R7MA 2F4LA 5A0MA 2VS7A 5E67A 3C0XA 1LWTA 3OOLA 5E5OA 3E54A 4AQUA 3MIPA 3KO2A 2XE0A 5A74A 5E5SA 3UVFA 3C0WA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1DFA A;  4UN9 A;  5AKN A;  3HYJ A;  1U0C A;  4YIS A;  2DCH X;  5E63 A;  1P8K Z;  1UM2 A;  2I3Q A;  5A0W A;  3MX9 A;  5A72 A;  2O7M A;  4UN8 A;  2XE0 B;  3MXB B;  2I3P A;  1N3E A;  1G9Z A;  3MXB A;  1T9J A;  4UN7 A;  1BP7 A;  4UT0 A;  3EH8 A;  4LOX A;  3R7P A;  1T9I A;  3HYI A;  2QOJ Z;  2CW7 A;  4UN9 G;  5AK9 A;  2VBO B;  2VBJ B;  1EF0 A;  4YIT A;  3QQY A;  4UNC A;  4D6O A;  4YHX A;  5AKM A;  3FD2 A;  4EFJ A;  2VBJ A;  2VBO A;  4AAD A;  4AAF A;  1G9Y A;  4UNA A;  4LQ0 A;  1VDE A;  4Z1Z A;  1DQ3 A;  1AF5 A;  1B24 A;  3MIS A;  2VBN A;  2FLD A;  4UN7 G;  4UNB A;  5A77 A;  1M5X A;  2CW8 A;  2VBL B;  4AAB A;  2AB5 A;  1JVA A;  4AAE A;  1LWS A;  3OOR A;  5A0M B;  4AQX A;  4Z20 A;  4UN8 G;  4D6N A;  5AKF A;  4Z1X A;  2VBN B;  3MXA A;  1U0D A;  1N3F A;  2VBL A;  1MOW A;  2EX5 A;  4AAG A;  5A78 A;  2VS8 A;  1R7M A;  5A0M A;  2VS7 A;  1LWT A;  5E67 A;  3C0X A;  3OOL A;  5E5O A;  3E54 A;  4AQU A;  3MIP A;  3KO2 A;  2XE0 A;  5A74 A;  5E5S A;  3UVF A;  3C0W A; 
#chains in the Genus database with same CATH topology
 1DFA A;  4UN9 A;  5AKN A;  3HYJ A;  1U0C A;  4YIS A;  2DCH X;  5E63 A;  1P8K Z;  1UM2 A;  2I3Q A;  5A0W A;  3MX9 A;  5A72 A;  2O7M A;  4UN8 A;  2XE0 B;  3MXB B;  2I3P A;  1N3E A;  1G9Z A;  3MXB A;  1T9J A;  4UN7 A;  1BP7 A;  4UT0 A;  3EH8 A;  4LOX A;  3R7P A;  1T9I A;  3HYI A;  2QOJ Z;  2CW7 A;  4UN9 G;  5AK9 A;  2VBO B;  2VBJ B;  1EF0 A;  4YIT A;  3QQY A;  4UNC A;  4D6O A;  4YHX A;  5AKM A;  3FD2 A;  4EFJ A;  2VBJ A;  2VBO A;  4AAD A;  4AAF A;  1G9Y A;  4UNA A;  4LQ0 A;  1VDE A;  4Z1Z A;  4KZS A;  1DQ3 A;  1AF5 A;  1B24 A;  3MIS A;  2VBN A;  2FLD A;  4UN7 G;  4UNB A;  5A77 A;  1M5X A;  2CW8 A;  2VBL B;  4AAB A;  2AB5 A;  1JVA A;  4AAE A;  1LWS A;  3OOR A;  5A0M B;  4AQX A;  4Z20 A;  4UN8 G;  4D6N A;  5AKF A;  4Z1X A;  2VBN B;  3MXA A;  1U0D A;  1N3F A;  2VBL A;  1MOW A;  2EX5 A;  4AAG A;  5A78 A;  2VS8 A;  1R7M A;  2F4L A;  5A0M A;  2VS7 A;  5E67 A;  3C0X A;  1LWT A;  3OOL A;  5E5O A;  3E54 A;  4AQU A;  3MIP A;  3KO2 A;  2XE0 A;  5A74 A;  5E5S A;  3UVF A;  3C0W A; 
#chains in the Genus database with same CATH homology
 1DFA A;  4UN9 A;  5AKN A;  3HYJ A;  1U0C A;  4YIS A;  2DCH X;  5E63 A;  1P8K Z;  1UM2 A;  2I3Q A;  5A0W A;  3MX9 A;  5A72 A;  2O7M A;  4UN8 A;  2XE0 B;  3MXB B;  2I3P A;  1N3E A;  1G9Z A;  3MXB A;  1T9J A;  4UN7 A;  1BP7 A;  4UT0 A;  3EH8 A;  4LOX A;  3R7P A;  1T9I A;  3HYI A;  2QOJ Z;  2CW7 A;  4UN9 G;  5AK9 A;  2VBO B;  2VBJ B;  1EF0 A;  4YIT A;  3QQY A;  4UNC A;  4D6O A;  4YHX A;  5AKM A;  3FD2 A;  4EFJ A;  2VBJ A;  2VBO A;  4AAD A;  4AAF A;  1G9Y A;  4UNA A;  4LQ0 A;  1VDE A;  4Z1Z A;  1DQ3 A;  1AF5 A;  1B24 A;  3MIS A;  2VBN A;  2FLD A;  4UN7 G;  4UNB A;  5A77 A;  1M5X A;  2CW8 A;  2VBL B;  4AAB A;  2AB5 A;  1JVA A;  4AAE A;  1LWS A;  3OOR A;  5A0M B;  4AQX A;  4Z20 A;  4UN8 G;  4D6N A;  5AKF A;  4Z1X A;  2VBN B;  3MXA A;  1U0D A;  1N3F A;  2VBL A;  1MOW A;  2EX5 A;  4AAG A;  5A78 A;  2VS8 A;  1R7M A;  5A0M A;  2VS7 A;  1LWT A;  5E67 A;  3C0X A;  3OOL A;  5E5O A;  3E54 A;  4AQU A;  3MIP A;  3KO2 A;  2XE0 A;  5A74 A;  5E5S A;  3UVF A;  3C0W A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1P8KZ

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations