1RZNA

Crystal structure of penicillin-binding protein-related factor a from bacillus subtilis.
Total Genus 49

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
165
structure length
150
Chain Sequence
TLEDDLNETNKYYLTNQIAVIHKKPTPVQIAYFKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKEKNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS8 (142-147)AH1 (34-48)TIV1 (60-78)S1 (52-55)S4 (88-92)S2 (60-61)AH2 (117-129)TI1 (106-109)S6 (109-111)S5 (95-103)S7 (132-139)TI'2 (139-142)S3 (79-80)3H1 (112-114)AH3 (148-157)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Bacillus subtilis
publication title Crystal Structure of Penicillin-binding protein-related factor A from Bacillus Subtilis.
rcsb
molecule keywords Recombination protein U
total genus 49
structure length 150
sequence length 165
chains with identical sequence B
ec nomenclature ec 3.1.22.4: Crossover junction endodeoxyribonuclease.
pdb deposition date 2003-12-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03838 RecU Recombination protein U
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1350.10 Alpha Beta 3-Layer(aba) Sandwich Trna Endonuclease; Chain: A, domain 1 Trna Endonuclease; Chain: A, domain 1 1rznA00
1HH1A 3AJVB 1OB8A 2WIZA 1IPIA 3AJVA 1ZP7A 2FCOA 2ZYZB 2GJWA 1RLVA 3DNXA 4QBNA 3IEYA 2CV8A 5FDKA 4QBOA 2ZYZA 1T0FA 2INBA 1XMXA 2WJ0A 1Y1OA 2GW6A 1RZNA 2VLDA 4QBLA 1Y88A 2WCZA 1R0VA 2EO0A 4TKKA 2OSTA 1GEFA 1OB9A 4TKDA 2WCWA 2OKFA 3P1ZB 3P1ZA 1A79A 2WIWA 1R11A 3P1YA 3FOVA 1F1ZA
chains in the Genus database with same CATH superfamily
1HH1A 3AJVB 1OB8A 4EV1A 2W8MA 4DA2A 2WIZA 3BT7A 1IPIA 2VS1A 3AJVA 1ZP7A 2Z0RA 2JJQA 2FCOA 2ZYZB 3IEYB 1RLVA 3DNXA 4LQEA 4QBNA 4DAVA 2GJWA 3IEYA 2CV8A 4E6ZA 5FDKA 4G6VA 1YNMA 4QBOA 2ZYZA 2BH2A 1T0FA 2INBA 1XMXA 3IF0X 1Y1OA 4G6UA 2WJ0A 2FKHB 2GW6A 1RZNA 4ZQUA 2VLDA 4QBLA 2FL3A 1Y88A 2WCZA 1R0VA 2EO0A 2IXSA 4TKKA 2OSTA 1GEFA 1UWVA 1OB9A 2FLCA 4TKDA 2WCWA 4DAPA 2OKFA 3P1ZB 2FKCA 3P1ZA 1A79A 2WIWA 1R11A 2CZRA 3P1YA 2DBSA 3FOVA 1F1ZA
chains in the Genus database with same CATH topology
1HH1A 3AJVB 1OB8A 4EV1A 2W8MA 4DA2A 2WIZA 3BT7A 1IPIA 2VS1A 3AJVA 1ZP7A 2Z0RA 2JJQA 2FCOA 2ZYZB 3IEYB 1RLVA 3DNXA 4LQEA 4QBNA 4DAVA 2GJWA 3IEYA 2CV8A 4E6ZA 5FDKA 4G6VA 1YNMA 4QBOA 2ZYZA 2BH2A 1T0FA 2INBA 1XMXA 3IF0X 1Y1OA 4G6UA 2WJ0A 2FKHB 2GW6A 1RZNA 4ZQUA 2VLDA 4QBLA 2FL3A 1Y88A 2WCZA 1R0VA 2EO0A 2IXSA 4TKKA 2OSTA 1GEFA 1UWVA 1OB9A 2FLCA 4TKDA 2WCWA 4DAPA 2OKFA 3P1ZB 2FKCA 3P1ZA 1A79A 2WIWA 1R11A 2CZRA 3P1YA 2DBSA 3FOVA 1F1ZA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1HH1 A;  3AJV B;  1OB8 A;  2WIZ A;  1IPI A;  3AJV A;  1ZP7 A;  2FCO A;  2ZYZ B;  2GJW A;  1RLV A;  3DNX A;  4QBN A;  3IEY A;  2CV8 A;  5FDK A;  4QBO A;  2ZYZ A;  1T0F A;  2INB A;  1XMX A;  2WJ0 A;  1Y1O A;  2GW6 A;  1RZN A;  2VLD A;  4QBL A;  1Y88 A;  2WCZ A;  1R0V A;  2EO0 A;  4TKK A;  2OST A;  1GEF A;  1OB9 A;  4TKD A;  2WCW A;  2OKF A;  3P1Z B;  3P1Z A;  1A79 A;  2WIW A;  1R11 A;  3P1Y A;  3FOV A;  1F1Z A; 
#chains in the Genus database with same CATH topology
 1HH1 A;  3AJV B;  1OB8 A;  4EV1 A;  2W8M A;  4DA2 A;  2WIZ A;  3BT7 A;  1IPI A;  2VS1 A;  3AJV A;  1ZP7 A;  2Z0R A;  2JJQ A;  2FCO A;  2ZYZ B;  3IEY B;  1RLV A;  3DNX A;  4LQE A;  4QBN A;  4DAV A;  2GJW A;  3IEY A;  2CV8 A;  4E6Z A;  5FDK A;  4G6V A;  1YNM A;  4QBO A;  2ZYZ A;  2BH2 A;  1T0F A;  2INB A;  1XMX A;  3IF0 X;  1Y1O A;  4G6U A;  2WJ0 A;  2FKH B;  2GW6 A;  1RZN A;  4ZQU A;  2VLD A;  4QBL A;  2FL3 A;  1Y88 A;  2WCZ A;  1R0V A;  2EO0 A;  2IXS A;  4TKK A;  2OST A;  1GEF A;  1UWV A;  1OB9 A;  2FLC A;  4TKD A;  2WCW A;  4DAP A;  2OKF A;  3P1Z B;  2FKC A;  3P1Z A;  1A79 A;  2WIW A;  1R11 A;  2CZR A;  3P1Y A;  2DBS A;  3FOV A;  1F1Z A; 
#chains in the Genus database with same CATH homology
 1HH1 A;  3AJV B;  1OB8 A;  4EV1 A;  2W8M A;  4DA2 A;  2WIZ A;  3BT7 A;  1IPI A;  2VS1 A;  3AJV A;  1ZP7 A;  2Z0R A;  2JJQ A;  2FCO A;  2ZYZ B;  3IEY B;  1RLV A;  3DNX A;  4LQE A;  4QBN A;  4DAV A;  2GJW A;  3IEY A;  2CV8 A;  4E6Z A;  5FDK A;  4G6V A;  1YNM A;  4QBO A;  2ZYZ A;  2BH2 A;  1T0F A;  2INB A;  1XMX A;  3IF0 X;  1Y1O A;  4G6U A;  2WJ0 A;  2FKH B;  2GW6 A;  1RZN A;  4ZQU A;  2VLD A;  4QBL A;  2FL3 A;  1Y88 A;  2WCZ A;  1R0V A;  2EO0 A;  2IXS A;  4TKK A;  2OST A;  1GEF A;  1UWV A;  1OB9 A;  2FLC A;  4TKD A;  2WCW A;  4DAP A;  2OKF A;  3P1Z B;  2FKC A;  3P1Z A;  1A79 A;  2WIW A;  1R11 A;  2CZR A;  3P1Y A;  2DBS A;  3FOV A;  1F1Z A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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