1T9IA

I-crei(d20n)/dna complex
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
153
structure length
153
Chain Sequence
NTKYNKEFLLYLAGFVDGNGSIIAQIKPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLDS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Metal-Dependent DNA Cleavage Mechanism of the I-CreI LAGLIDADG Homing Endonuclease.
pubmed doi rcsb
molecule tags Hydrolase/dna
source organism Chlamydomonas reinhardtii
molecule keywords 5'-D(*GP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*GP*AP*GP*AP*CP*AP*
total genus 52
structure length 153
sequence length 153
chains with identical sequence B
ec nomenclature ec 3.1.-.-:
pdb deposition date 2004-05-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00961 LAGLIDADG_1 LAGLIDADG endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.28.10 Alpha Beta Roll Endonuclease I-creI Homing endonucleases 1t9iA00
3MXBB 4AAEA 3UVFA 2O7MA 5A0MA 5AKMA 4UNBA 3MXAA 3MISA 2VBNB 4UN8A 4Z1ZA 4YISA 3OORA 3FD2A 4EFJA 4AAFA 3E54A 2FLDA 1BP7A 4UN9G 1B24A 2QOJZ 3MX9A 5A77A 2AB5A 4AQUA 2VS8A 1JVAA 2VBNA 1P8KZ 4LOXA 4AADA 1LWTA 1DFAA 5A72A 4UN8G 2XE0B 1N3FA 5AK9A 3HYIA 1EF0A 3R7PA 5A78A 1VDEA 2CW7A 3MIPA 2VS7A 3QQYA 5E5SA 5AKFA 3KO2A 1UM2A 3HYJA 2XE0A 2EX5A 3C0XA 1AF5A 3C0WA 4AAGA 2DCHX 1T9IA 3OOLA 2VBLA 2I3QA 4YHXA 2VBJB 4UT0A 1G9ZA 5E67A 2VBOA 4UN9A 1U0DA 1MOWA 4AABA 5AKNA 2VBLB 4UN7A 4D6OA 1R7MA 2VBOB 4UNAA 1N3EA 5A74A 4UNCA 1M5XA 5E63A 2I3PA 4LQ0A 2VBJA 1T9JA 4Z1XA 4AQXA 5A0MB 5E5OA 2CW8A 1G9YA 1DQ3A 4YITA 3MXBA 4UN7G 5A0WA 1U0CA 3EH8A 4Z20A 1LWSA 4D6NA
chains in the Genus database with same CATH superfamily
3MXBB 4AAEA 3UVFA 2O7MA 5A0MA 5AKMA 4UNBA 3MXAA 3MISA 2VBNB 4UN8A 4Z1ZA 4YISA 3OORA 3FD2A 4EFJA 4AAFA 3E54A 2FLDA 1BP7A 4UN9G 1B24A 2QOJZ 3MX9A 5A77A 2F4LA 2AB5A 4AQUA 2VS8A 1JVAA 2VBNA 1P8KZ 4LOXA 4AADA 1LWTA 1DFAA 5A72A 4UN8G 2XE0B 1N3FA 5AK9A 3HYIA 1EF0A 3R7PA 5A78A 1VDEA 2CW7A 3MIPA 2VS7A 3QQYA 5E5SA 5AKFA 3KO2A 1UM2A 3HYJA 2XE0A 2EX5A 3C0XA 1AF5A 3C0WA 4AAGA 2DCHX 1T9IA 3OOLA 2VBLA 2I3QA 4YHXA 2VBJB 4UT0A 1G9ZA 5E67A 2VBOA 4UN9A 1U0DA 1MOWA 4AABA 5AKNA 2VBLB 4KZSA 4UN7A 4D6OA 1R7MA 2VBOB 4UNAA 1N3EA 5A74A 4UNCA 1M5XA 5E63A 2I3PA 4LQ0A 2VBJA 1T9JA 4Z1XA 4AQXA 5A0MB 5E5OA 2CW8A 1G9YA 1DQ3A 4YITA 3MXBA 4UN7G 5A0WA 1U0CA 3EH8A 4Z20A 1LWSA 4D6NA
chains in the Genus database with same CATH topology
3MXBB 4AAEA 3UVFA 2O7MA 5A0MA 5AKMA 4UNBA 3MXAA 3MISA 2VBNB 4UN8A 4Z1ZA 4YISA 3OORA 3FD2A 4EFJA 4AAFA 3E54A 2FLDA 1BP7A 4UN9G 1B24A 2QOJZ 3MX9A 5A77A 2AB5A 4AQUA 2VS8A 1JVAA 2VBNA 1P8KZ 4LOXA 4AADA 1LWTA 1DFAA 5A72A 4UN8G 2XE0B 1N3FA 5AK9A 3HYIA 1EF0A 3R7PA 5A78A 1VDEA 2CW7A 3MIPA 2VS7A 3QQYA 5E5SA 5AKFA 3KO2A 1UM2A 3HYJA 2XE0A 2EX5A 3C0XA 1AF5A 3C0WA 4AAGA 2DCHX 1T9IA 3OOLA 2VBLA 2I3QA 4YHXA 2VBJB 4UT0A 1G9ZA 5E67A 2VBOA 4UN9A 1U0DA 1MOWA 4AABA 5AKNA 2VBLB 4UN7A 4D6OA 1R7MA 2VBOB 4UNAA 1N3EA 5A74A 4UNCA 1M5XA 5E63A 2I3PA 4LQ0A 2VBJA 1T9JA 4Z1XA 4AQXA 5A0MB 5E5OA 2CW8A 1G9YA 1DQ3A 4YITA 3MXBA 4UN7G 5A0WA 1U0CA 3EH8A 4Z20A 1LWSA 4D6NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MXB B;  4AAE A;  3UVF A;  2O7M A;  5A0M A;  5AKM A;  4UNB A;  3MXA A;  3MIS A;  2VBN B;  4UN8 A;  4Z1Z A;  4YIS A;  3OOR A;  3FD2 A;  4EFJ A;  4AAF A;  3E54 A;  2FLD A;  1BP7 A;  4UN9 G;  1B24 A;  2QOJ Z;  3MX9 A;  5A77 A;  2AB5 A;  4AQU A;  2VS8 A;  1JVA A;  2VBN A;  1P8K Z;  4LOX A;  4AAD A;  1LWT A;  1DFA A;  5A72 A;  4UN8 G;  2XE0 B;  1N3F A;  5AK9 A;  3HYI A;  1EF0 A;  3R7P A;  5A78 A;  1VDE A;  2CW7 A;  3MIP A;  2VS7 A;  3QQY A;  5E5S A;  5AKF A;  3KO2 A;  1UM2 A;  3HYJ A;  2XE0 A;  2EX5 A;  3C0X A;  1AF5 A;  3C0W A;  4AAG A;  2DCH X;  1T9I A;  3OOL A;  2VBL A;  2I3Q A;  4YHX A;  2VBJ B;  4UT0 A;  1G9Z A;  5E67 A;  2VBO A;  4UN9 A;  1U0D A;  1MOW A;  4AAB A;  5AKN A;  2VBL B;  4UN7 A;  4D6O A;  1R7M A;  2VBO B;  4UNA A;  1N3E A;  5A74 A;  4UNC A;  1M5X A;  5E63 A;  2I3P A;  4LQ0 A;  2VBJ A;  1T9J A;  4Z1X A;  4AQX A;  5A0M B;  5E5O A;  2CW8 A;  1G9Y A;  1DQ3 A;  4YIT A;  3MXB A;  4UN7 G;  5A0W A;  1U0C A;  3EH8 A;  4Z20 A;  1LWS A;  4D6N A; 
#chains in the Genus database with same CATH topology
 3MXB B;  4AAE A;  3UVF A;  2O7M A;  5A0M A;  5AKM A;  4UNB A;  3MXA A;  3MIS A;  2VBN B;  4UN8 A;  4Z1Z A;  4YIS A;  3OOR A;  3FD2 A;  4EFJ A;  4AAF A;  3E54 A;  2FLD A;  1BP7 A;  4UN9 G;  1B24 A;  2QOJ Z;  3MX9 A;  5A77 A;  2F4L A;  2AB5 A;  4AQU A;  2VS8 A;  1JVA A;  2VBN A;  1P8K Z;  4LOX A;  4AAD A;  1LWT A;  1DFA A;  5A72 A;  4UN8 G;  2XE0 B;  1N3F A;  5AK9 A;  3HYI A;  1EF0 A;  3R7P A;  5A78 A;  1VDE A;  2CW7 A;  3MIP A;  2VS7 A;  3QQY A;  5E5S A;  5AKF A;  3KO2 A;  1UM2 A;  3HYJ A;  2XE0 A;  2EX5 A;  3C0X A;  1AF5 A;  3C0W A;  4AAG A;  2DCH X;  1T9I A;  3OOL A;  2VBL A;  2I3Q A;  4YHX A;  2VBJ B;  4UT0 A;  1G9Z A;  5E67 A;  2VBO A;  4UN9 A;  1U0D A;  1MOW A;  4AAB A;  5AKN A;  2VBL B;  4KZS A;  4UN7 A;  4D6O A;  1R7M A;  2VBO B;  4UNA A;  1N3E A;  5A74 A;  4UNC A;  1M5X A;  5E63 A;  2I3P A;  4LQ0 A;  2VBJ A;  1T9J A;  4Z1X A;  4AQX A;  5A0M B;  5E5O A;  2CW8 A;  1G9Y A;  1DQ3 A;  4YIT A;  3MXB A;  4UN7 G;  5A0W A;  1U0C A;  3EH8 A;  4Z20 A;  1LWS A;  4D6N A; 
#chains in the Genus database with same CATH homology
 3MXB B;  4AAE A;  3UVF A;  2O7M A;  5A0M A;  5AKM A;  4UNB A;  3MXA A;  3MIS A;  2VBN B;  4UN8 A;  4Z1Z A;  4YIS A;  3OOR A;  3FD2 A;  4EFJ A;  4AAF A;  3E54 A;  2FLD A;  1BP7 A;  4UN9 G;  1B24 A;  2QOJ Z;  3MX9 A;  5A77 A;  2AB5 A;  4AQU A;  2VS8 A;  1JVA A;  2VBN A;  1P8K Z;  4LOX A;  4AAD A;  1LWT A;  1DFA A;  5A72 A;  4UN8 G;  2XE0 B;  1N3F A;  5AK9 A;  3HYI A;  1EF0 A;  3R7P A;  5A78 A;  1VDE A;  2CW7 A;  3MIP A;  2VS7 A;  3QQY A;  5E5S A;  5AKF A;  3KO2 A;  1UM2 A;  3HYJ A;  2XE0 A;  2EX5 A;  3C0X A;  1AF5 A;  3C0W A;  4AAG A;  2DCH X;  1T9I A;  3OOL A;  2VBL A;  2I3Q A;  4YHX A;  2VBJ B;  4UT0 A;  1G9Z A;  5E67 A;  2VBO A;  4UN9 A;  1U0D A;  1MOW A;  4AAB A;  5AKN A;  2VBL B;  4UN7 A;  4D6O A;  1R7M A;  2VBO B;  4UNA A;  1N3E A;  5A74 A;  4UNC A;  1M5X A;  5E63 A;  2I3P A;  4LQ0 A;  2VBJ A;  1T9J A;  4Z1X A;  4AQX A;  5A0M B;  5E5O A;  2CW8 A;  1G9Y A;  1DQ3 A;  4YIT A;  3MXB A;  4UN7 G;  5A0W A;  1U0C A;  3EH8 A;  4Z20 A;  1LWS A;  4D6N A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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