1XADA

Chimera isopropylmalate dehydrogenase between bacillus subtilis (m) and thermus thermophilus (t) from n-terminal: 20% t middle 20% m residual 60% t, mutated at s82r. low temperature (150k) structure.
Total Genus 114

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
114
sequence length
345
structure length
345
Chain Sequence
MKVAVLPGDGIGPEVTEAALKVLRALDEAEGLGLAYEVFPFGGAAIDAFGEPFPEPTRKGVEEAEAVLLGSVGGPKWDQNPRELRPEKGLLSIRKQLDLFANLRPVKVFESLSDASPLKKEYIDNVDFVIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVERVARVAFEAARKRRKHVVSVDKANVLEVGEFWRKTVEEVGRGYPDVALEHQYVDAMAMHLVRSPARFDVVVTGNIFGDILSDLASVLPGSLGLLPSASLGRGTPVFEPVHGSAPDIAGKGIANPTAAILSAAMMLEHAFGLVELARKVEDAVAKALLETPPPDLGGSAGTEAFTATVLRHLA
5010015020025030030025020015010050
020406080100Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (35-38)S1 (2-8)TIV1 (64-67)AH1 (11-30)AH13 (333-343)TVIII1 (51-54)AH2 (43-49)AH4 (75-79)AH3 (55-63)AH5 (86-97)TIV3 (82-85)S4 (99-107)TIV4 (133-136)TII1 (123-126)AH6 (120-123)S5 (127-133)TIV6 (230-233)AH10 (237-248)AH7 (159-175)TI1 (137-140)TI2 (138-141)S6 (145-146)S7 (151-152)TI3 (147-150)AH8 (190-202)TI5 (206-209)AH12 (305-321)S9 (210-215)S8 (179-184)TI4 (185-188)AH9 (216-226)TIV5 (186-189)3H2 (203-205)3H3 (227-229)3H4 (277-279)TII2 (279-282)AH11 (287-302)O1 (303-305)S3 (66-71)S12 (268-272)3H1 (110-115)TIV7 (248-251)S11 (257-263)3H5 (325-327)S10 (232-235)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Thermus thermophilus
publication title Cryocrystallography of 3-Isopropylmalate dehydrogenase from Thermus thermophilus and its chimeric enzyme.
pubmed doi rcsb
molecule keywords 3-ISOPROPYLMALATE DEHYDROGENASE 2T2M6T S82R
total genus 114
structure length 345
sequence length 345
ec nomenclature ec 1.1.1.85: 3-isopropylmalate dehydrogenase.
pdb deposition date 1995-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00180 Iso_dh Isocitrate/isopropylmalate dehydrogenase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.718.10 Alpha Beta 3-Layer(aba) Sandwich Isopropylmalate Dehydrogenase Isopropylmalate Dehydrogenase 1xadA00
1XKDA 1T0LA 2HI1A 3UF6A 1PB3A 1IPDA 4WUOA 2E0CA 1V53A 1BL5A 1IDCA 1XACA 5GRHB 3TNGA 5GREA 4AJCA 4AOUA 1A05A 4AJRA 9ICDA 1VLCA 3LXYA 4AOYA 4BNPA 5HN6A 3R8WA 4ATYA 3ASJA 3VMJA 5K11A 4JQPA 3UDUA 4AOVA 4AJ3A 2Y42A 3BLXA 1PS7A 1IDDA 5GRFB 4AJSA 5GRIA 5J33A 3TY4A 2QFYA 2QFVA 3VL2A 5DE1A 3VL6A 3WZWA 4XS3A 4XXVA 1ZORA 1WPWA 5HN5A 5GRLB 8ICDA 1YCOA 1DPZA 4UMYA 1IDEA 3VL7A 3US8A 4P69C 1OSJA 1IDFA 2G4OA 1GC8A 4IWHA 1P8FA 3WZYA 1DR8A 4UMXA 1IKAA 1TYOA 1V5BA 2QFXA 1PB1A 3MARA 1XAAA 1IDMA 3VL3A 3MASA 5J34A 2Y40A 2Y3ZA 5HN4A 4L03A 1HJ6A 3VMLA 3LCBC 5GREB 3MAPA 1XABA 4HCXA 4ICDA 1AI3A 4KZOA 3BLVA 2E5MA 4XRXA 1X0LA 4AJAA 2D4VA 1CW7A 3INMA 4JA8A 1CM7A 3AH3A 1WALA 1GROA 1GC9A 2ZTWA 5J32A 3FMXX 5GRHA 1W0DA 3BLXB 1CW4A 6ICDA 1G2UA 1T09A 4I3LA 5GRIB 1SJSA 1YXOA 2UXQA 2DHTA 2Y41A 3VL4A 1GRPA 3TY3A 3VMKA 5LGEA 5L58A 3TSNA 5K10A 1ISOA 1CNZA 3ICDA 4YB4A 5I96A 5GRFA 1DR0A 1V94A 5I95A 1AI2A 4L06A 1PS6A 4I3KA 3WZVA 1CW1A 2AYQA 3FLKA 1XADA 5L57A 3U1HA 3VKZA 3DMSA 1VI1A 5GRLA 3MASB 4F7IA 2QFWA 4Y1PA 1XGVA 1LWDA 4L04A 1HQSA 2UXRA 3U9EA 4AJBA 1R8KA 2IV0A 2D1CA 3WZXA 5HN3A 1HEXA 1OSIA 1PTMA 1U7NA 5ICDA 3BLVB 3UDOA 7ICDA
chains in the Genus database with same CATH superfamily
1XKDA 1T0LA 2HI1A 3UF6A 1PB3A 1IPDA 4WUOA 2E0CA 1V53A 1BL5A 1IDCA 1XACA 5GRHB 3TNGA 5GREA 4AJCA 4AOUA 1A05A 4AJRA 9ICDA 1VLCA 3LXYA 4AOYA 4BNPA 5HN6A 3R8WA 4ATYA 3ASJA 3VMJA 5K11A 4JQPA 3UDUA 4AOVA 4AJ3A 2Y42A 3BLXA 1PS7A 1IDDA 5GRFB 4AJSA 5GRIA 5J33A 3TY4A 2QFYA 2QFVA 3VL2A 5DE1A 3VL6A 3WZWA 4XS3A 4XXVA 1ZORA 1WPWA 5HN5A 5GRLB 8ICDA 1YCOA 1DPZA 4UMYA 1IDEA 3VL7A 3US8A 4P69C 1OSJA 1IDFA 2G4OA 1GC8A 4IWHA 1P8FA 3WZYA 1DR8A 4UMXA 1IKAA 1TYOA 1V5BA 2QFXA 1PB1A 3MARA 1XAAA 1IDMA 3VL3A 3MASA 5J34A 2Y40A 2Y3ZA 5HN4A 4L03A 1HJ6A 3VMLA 3LCBC 5GREB 3MAPA 1XABA 4HCXA 4ICDA 1AI3A 4KZOA 3BLVA 2E5MA 4XRXA 1X0LA 4AJAA 2D4VA 1CW7A 3INMA 4JA8A 1CM7A 3AH3A 1WALA 1GROA 1GC9A 2ZTWA 5J32A 3FMXX 5GRHA 1W0DA 3BLXB 1CW4A 6ICDA 1G2UA 1T09A 4I3LA 5GRIB 1SJSA 1YXOA 2UXQA 2DHTA 2Y41A 3VL4A 1GRPA 3TY3A 3VMKA 5LGEA 5L58A 3TSNA 5K10A 1ISOA 1CNZA 3ICDA 4YB4A 5I96A 5GRFA 1DR0A 1V94A 5I95A 1AI2A 4L06A 1PS6A 4I3KA 3WZVA 1CW1A 2AYQA 3FLKA 1XADA 5L57A 3U1HA 3VKZA 3DMSA 1VI1A 5GRLA 3MASB 4F7IA 2QFWA 4Y1PA 1XGVA 1LWDA 4L04A 1HQSA 2UXRA 3U9EA 4AJBA 1R8KA 2IV0A 2D1CA 3WZXA 5HN3A 1HEXA 1OSIA 1PTMA 1U7NA 5ICDA 3BLVB 3UDOA 7ICDA
chains in the Genus database with same CATH topology
1XKDA 1T0LA 2HI1A 3UF6A 1PB3A 1IPDA 4WUOA 2E0CA 1V53A 1BL5A 1IDCA 1XACA 5GRHB 3TNGA 5GREA 4AJCA 4AOUA 1A05A 4AJRA 9ICDA 1VLCA 3LXYA 4AOYA 4BNPA 5HN6A 3R8WA 4ATYA 3ASJA 3VMJA 5K11A 4JQPA 3UDUA 4AOVA 4AJ3A 2Y42A 3BLXA 1PS7A 1IDDA 5GRFB 4AJSA 5GRIA 5J33A 3TY4A 2QFYA 2QFVA 3VL2A 5DE1A 3VL6A 3WZWA 4XS3A 4XXVA 1ZORA 1WPWA 5HN5A 5GRLB 8ICDA 1YCOA 1DPZA 4UMYA 1IDEA 3VL7A 3US8A 4P69C 1OSJA 1IDFA 2G4OA 1GC8A 4IWHA 1P8FA 3WZYA 1DR8A 4UMXA 1IKAA 1TYOA 1V5BA 2QFXA 1PB1A 3MARA 1XAAA 1IDMA 3VL3A 3MASA 5J34A 2Y40A 2Y3ZA 5HN4A 4L03A 1HJ6A 3VMLA 3LCBC 5GREB 3MAPA 1XABA 4HCXA 4ICDA 1AI3A 4KZOA 3BLVA 2E5MA 4XRXA 1X0LA 4AJAA 2D4VA 1CW7A 3INMA 4JA8A 1CM7A 3AH3A 1WALA 1GROA 1GC9A 2ZTWA 5J32A 3FMXX 5GRHA 1W0DA 3BLXB 1CW4A 6ICDA 1G2UA 1T09A 4I3LA 5GRIB 1SJSA 1YXOA 2UXQA 2DHTA 2Y41A 3VL4A 1GRPA 3TY3A 3VMKA 5LGEA 5L58A 3TSNA 5K10A 1ISOA 1CNZA 3ICDA 4YB4A 5I96A 5GRFA 1DR0A 1V94A 5I95A 1AI2A 4L06A 1PS6A 4I3KA 3WZVA 1CW1A 2AYQA 3FLKA 1XADA 5L57A 3U1HA 3VKZA 3DMSA 1VI1A 5GRLA 3MASB 4F7IA 2QFWA 4Y1PA 1XGVA 1LWDA 4L04A 1HQSA 2UXRA 3U9EA 4AJBA 1R8KA 2IV0A 2D1CA 3WZXA 5HN3A 1HEXA 1OSIA 1PTMA 1U7NA 5ICDA 3BLVB 3UDOA 7ICDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XKD A;  1T0L A;  2HI1 A;  3UF6 A;  1PB3 A;  1IPD A;  4WUO A;  2E0C A;  1V53 A;  1BL5 A;  1IDC A;  1XAC A;  5GRH B;  3TNG A;  5GRE A;  4AJC A;  4AOU A;  1A05 A;  4AJR A;  9ICD A;  1VLC A;  3LXY A;  4AOY A;  4BNP A;  5HN6 A;  3R8W A;  4ATY A;  3ASJ A;  3VMJ A;  5K11 A;  4JQP A;  3UDU A;  4AOV A;  4AJ3 A;  2Y42 A;  3BLX A;  1PS7 A;  1IDD A;  5GRF B;  4AJS A;  5GRI A;  5J33 A;  3TY4 A;  2QFY A;  2QFV A;  3VL2 A;  5DE1 A;  3VL6 A;  3WZW A;  4XS3 A;  4XXV A;  1ZOR A;  1WPW A;  5HN5 A;  5GRL B;  8ICD A;  1YCO A;  1DPZ A;  4UMY A;  1IDE A;  3VL7 A;  3US8 A;  4P69 C;  1OSJ A;  1IDF A;  2G4O A;  1GC8 A;  4IWH A;  1P8F A;  3WZY A;  1DR8 A;  4UMX A;  1IKA A;  1TYO A;  1V5B A;  2QFX A;  1PB1 A;  3MAR A;  1XAA A;  1IDM A;  3VL3 A;  3MAS A;  5J34 A;  2Y40 A;  2Y3Z A;  5HN4 A;  4L03 A;  1HJ6 A;  3VML A;  3LCB C;  5GRE B;  3MAP A;  1XAB A;  4HCX A;  4ICD A;  1AI3 A;  4KZO A;  3BLV A;  2E5M A;  4XRX A;  1X0L A;  4AJA A;  2D4V A;  1CW7 A;  3INM A;  4JA8 A;  1CM7 A;  3AH3 A;  1WAL A;  1GRO A;  1GC9 A;  2ZTW A;  5J32 A;  3FMX X;  5GRH A;  1W0D A;  3BLX B;  1CW4 A;  6ICD A;  1G2U A;  1T09 A;  4I3L A;  5GRI B;  1SJS A;  1YXO A;  2UXQ A;  2DHT A;  2Y41 A;  3VL4 A;  1GRP A;  3TY3 A;  3VMK A;  5LGE A;  5L58 A;  3TSN A;  5K10 A;  1ISO A;  1CNZ A;  3ICD A;  4YB4 A;  5I96 A;  5GRF A;  1DR0 A;  1V94 A;  5I95 A;  1AI2 A;  4L06 A;  1PS6 A;  4I3K A;  3WZV A;  1CW1 A;  2AYQ A;  3FLK A;  1XAD A;  5L57 A;  3U1H A;  3VKZ A;  3DMS A;  1VI1 A;  5GRL A;  3MAS B;  4F7I A;  2QFW A;  4Y1P A;  1XGV A;  1LWD A;  4L04 A;  1HQS A;  2UXR A;  3U9E A;  4AJB A;  1R8K A;  2IV0 A;  2D1C A;  3WZX A;  5HN3 A;  1HEX A;  1OSI A;  1PTM A;  1U7N A;  5ICD A;  3BLV B;  3UDO A;  7ICD A; 
#chains in the Genus database with same CATH topology
 1XKD A;  1T0L A;  2HI1 A;  3UF6 A;  1PB3 A;  1IPD A;  4WUO A;  2E0C A;  1V53 A;  1BL5 A;  1IDC A;  1XAC A;  5GRH B;  3TNG A;  5GRE A;  4AJC A;  4AOU A;  1A05 A;  4AJR A;  9ICD A;  1VLC A;  3LXY A;  4AOY A;  4BNP A;  5HN6 A;  3R8W A;  4ATY A;  3ASJ A;  3VMJ A;  5K11 A;  4JQP A;  3UDU A;  4AOV A;  4AJ3 A;  2Y42 A;  3BLX A;  1PS7 A;  1IDD A;  5GRF B;  4AJS A;  5GRI A;  5J33 A;  3TY4 A;  2QFY A;  2QFV A;  3VL2 A;  5DE1 A;  3VL6 A;  3WZW A;  4XS3 A;  4XXV A;  1ZOR A;  1WPW A;  5HN5 A;  5GRL B;  8ICD A;  1YCO A;  1DPZ A;  4UMY A;  1IDE A;  3VL7 A;  3US8 A;  4P69 C;  1OSJ A;  1IDF A;  2G4O A;  1GC8 A;  4IWH A;  1P8F A;  3WZY A;  1DR8 A;  4UMX A;  1IKA A;  1TYO A;  1V5B A;  2QFX A;  1PB1 A;  3MAR A;  1XAA A;  1IDM A;  3VL3 A;  3MAS A;  5J34 A;  2Y40 A;  2Y3Z A;  5HN4 A;  4L03 A;  1HJ6 A;  3VML A;  3LCB C;  5GRE B;  3MAP A;  1XAB A;  4HCX A;  4ICD A;  1AI3 A;  4KZO A;  3BLV A;  2E5M A;  4XRX A;  1X0L A;  4AJA A;  2D4V A;  1CW7 A;  3INM A;  4JA8 A;  1CM7 A;  3AH3 A;  1WAL A;  1GRO A;  1GC9 A;  2ZTW A;  5J32 A;  3FMX X;  5GRH A;  1W0D A;  3BLX B;  1CW4 A;  6ICD A;  1G2U A;  1T09 A;  4I3L A;  5GRI B;  1SJS A;  1YXO A;  2UXQ A;  2DHT A;  2Y41 A;  3VL4 A;  1GRP A;  3TY3 A;  3VMK A;  5LGE A;  5L58 A;  3TSN A;  5K10 A;  1ISO A;  1CNZ A;  3ICD A;  4YB4 A;  5I96 A;  5GRF A;  1DR0 A;  1V94 A;  5I95 A;  1AI2 A;  4L06 A;  1PS6 A;  4I3K A;  3WZV A;  1CW1 A;  2AYQ A;  3FLK A;  1XAD A;  5L57 A;  3U1H A;  3VKZ A;  3DMS A;  1VI1 A;  5GRL A;  3MAS B;  4F7I A;  2QFW A;  4Y1P A;  1XGV A;  1LWD A;  4L04 A;  1HQS A;  2UXR A;  3U9E A;  4AJB A;  1R8K A;  2IV0 A;  2D1C A;  3WZX A;  5HN3 A;  1HEX A;  1OSI A;  1PTM A;  1U7N A;  5ICD A;  3BLV B;  3UDO A;  7ICD A; 
#chains in the Genus database with same CATH homology
 1XKD A;  1T0L A;  2HI1 A;  3UF6 A;  1PB3 A;  1IPD A;  4WUO A;  2E0C A;  1V53 A;  1BL5 A;  1IDC A;  1XAC A;  5GRH B;  3TNG A;  5GRE A;  4AJC A;  4AOU A;  1A05 A;  4AJR A;  9ICD A;  1VLC A;  3LXY A;  4AOY A;  4BNP A;  5HN6 A;  3R8W A;  4ATY A;  3ASJ A;  3VMJ A;  5K11 A;  4JQP A;  3UDU A;  4AOV A;  4AJ3 A;  2Y42 A;  3BLX A;  1PS7 A;  1IDD A;  5GRF B;  4AJS A;  5GRI A;  5J33 A;  3TY4 A;  2QFY A;  2QFV A;  3VL2 A;  5DE1 A;  3VL6 A;  3WZW A;  4XS3 A;  4XXV A;  1ZOR A;  1WPW A;  5HN5 A;  5GRL B;  8ICD A;  1YCO A;  1DPZ A;  4UMY A;  1IDE A;  3VL7 A;  3US8 A;  4P69 C;  1OSJ A;  1IDF A;  2G4O A;  1GC8 A;  4IWH A;  1P8F A;  3WZY A;  1DR8 A;  4UMX A;  1IKA A;  1TYO A;  1V5B A;  2QFX A;  1PB1 A;  3MAR A;  1XAA A;  1IDM A;  3VL3 A;  3MAS A;  5J34 A;  2Y40 A;  2Y3Z A;  5HN4 A;  4L03 A;  1HJ6 A;  3VML A;  3LCB C;  5GRE B;  3MAP A;  1XAB A;  4HCX A;  4ICD A;  1AI3 A;  4KZO A;  3BLV A;  2E5M A;  4XRX A;  1X0L A;  4AJA A;  2D4V A;  1CW7 A;  3INM A;  4JA8 A;  1CM7 A;  3AH3 A;  1WAL A;  1GRO A;  1GC9 A;  2ZTW A;  5J32 A;  3FMX X;  5GRH A;  1W0D A;  3BLX B;  1CW4 A;  6ICD A;  1G2U A;  1T09 A;  4I3L A;  5GRI B;  1SJS A;  1YXO A;  2UXQ A;  2DHT A;  2Y41 A;  3VL4 A;  1GRP A;  3TY3 A;  3VMK A;  5LGE A;  5L58 A;  3TSN A;  5K10 A;  1ISO A;  1CNZ A;  3ICD A;  4YB4 A;  5I96 A;  5GRF A;  1DR0 A;  1V94 A;  5I95 A;  1AI2 A;  4L06 A;  1PS6 A;  4I3K A;  3WZV A;  1CW1 A;  2AYQ A;  3FLK A;  1XAD A;  5L57 A;  3U1H A;  3VKZ A;  3DMS A;  1VI1 A;  5GRL A;  3MAS B;  4F7I A;  2QFW A;  4Y1P A;  1XGV A;  1LWD A;  4L04 A;  1HQS A;  2UXR A;  3U9E A;  4AJB A;  1R8K A;  2IV0 A;  2D1C A;  3WZX A;  5HN3 A;  1HEX A;  1OSI A;  1PTM A;  1U7N A;  5ICD A;  3BLV B;  3UDO A;  7ICD A; 
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