2BOY | Genus

Total Genus 70

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	70
sequence length	253
structure length	253
Chain Sequence	STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of 3-chlorocatechol 1,2-dioxygenase key enzyme of a new modified ortho-pathway from the Gram-positive Rhodococcus opacus 1CP grown on 2-chlorophenol. pubmed doi rcsb
molecule keywords	3-CHLOROCATECHOL 1,2-DIOXYGENASE
molecule tags	Oxidoreductase
total genus	70
structure length	253
sequence length	253
chains with identical sequence	B, C, D, E, F, G, H
ec nomenclature	ec 1.13.11.1: Catechol 1,2-dioxygenase.
pdb deposition date	2005-04-15

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00775	Dioxygenase_C	Dioxygenase
A	PF04444	Dioxygenase_N	Catechol dioxygenase N terminus

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	2boyA00

1DLTA 1YKLA 3N9TA 2BUWB 3MI1M 3LMXM 3MFLM 3PCEM 3PCGM 5TD3A 1EOCA 3MV6A 3PCDA 3HHXA 3HGIA 3LXVA 1S9AA 3I51A 3MV4A 1EO2A 3PCNM 4ILTA 3PCBA 3TH1A 2XSUA 3MI5A 3HHYA 3O6JA 3PCKA 1EOCB 3PCLA 1YKPA 1EO9A 3PCHA 1EO2B 3PCJM 3PCMA 3T63A 2PCDM 3PCFA 4WHPB 3PCIM 3LKTM 1EOBA 1EO9B 1YKPB 3PCCA 4WHPD 3T67M 2XSRA 4WHRF 3PCAA 2BUMA 1YKMA 1EOAA 4WHPA 2BURB 2AZQA 2BUTB 3O32A 2BUZB 2BUVA 4WHQA 1EOBB 3MI1A 3MV6M 3PCDM 3LMXA 3MFLA 1DLQA 4WHOD 4WHSD 4ILVA 3PCEA 2XSVA 2BURA 2BUMB 3PCGA 1YKMB 3MV4M 2PCDA 1EOAB 4WHSA 4WHOA 2BUTA 1YKOB 1YKKA 2BUZA 3HJQA 3MI5M 2BV0A 3PCKM 2BUVB 2BUQA 1TMXA 3PCNA 4WHQB 1YKNA 2BUXA 3PCLM 1YKOA 4WHSB 4WHOB 3HJ8A 3PCMM 1YKKB 4WHRB 3T63M 2BV0B 3PCFM 3HKPA 2BUQB 3I4VA 1YKNB 2BUYA 2BUXB 2BUUA 3PCJA 3O6RA 3LXVM 3I4YA 2BUWA 3PCCM 1DLMA 1YKLB 3PCIA 3PCBM 3LKTA 3PCAM 2BOYA 4WHRA 3O5UA 1DMHA 3T67A 3HJSA 2BUYB 2BUUB 3PCHM
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1DLT A;  1YKL A;  3N9T A;  2BUW B;  3MI1 M;  3LMX M;  3MFL M;  3PCE M;  3PCG M;  5TD3 A;  1EOC A;  3MV6 A;  3PCD A;  3HHX A;  3HGI A;  3LXV A;  1S9A A;  3I51 A;  3MV4 A;  1EO2 A;  3PCN M;  4ILT A;  3PCB A;  3TH1 A;  2XSU A;  3MI5 A;  3HHY A;  3O6J A;  3PCK A;  1EOC B;  3PCL A;  1YKP A;  1EO9 A;  3PCH A;  1EO2 B;  3PCJ M;  3PCM A;  3T63 A;  2PCD M;  3PCF A;  4WHP B;  3PCI M;  3LKT M;  1EOB A;  1EO9 B;  1YKP B;  3PCC A;  4WHP D;  3T67 M;  2XSR A;  4WHR F;  3PCA A;  2BUM A;  1YKM A;  1EOA A;  4WHP A;  2BUR B;  2AZQ A;  2BUT B;  3O32 A;  2BUZ B;  2BUV A;  4WHQ A;  1EOB B;  3MI1 A;  3MV6 M;  3PCD M;  3LMX A;  3MFL A;  1DLQ A;  4WHO D;  4WHS D;  4ILV A;  3PCE A;  2XSV A;  2BUR A;  2BUM B;  3PCG A;  1YKM B;  3MV4 M;  2PCD A;  1EOA B;  4WHS A;  4WHO A;  2BUT A;  1YKO B;  1YKK A;  2BUZ A;  3HJQ A;  3MI5 M;  2BV0 A;  3PCK M;  2BUV B;  2BUQ A;  1TMX A;  3PCN A;  4WHQ B;  1YKN A;  2BUX A;  3PCL M;  1YKO A;  4WHS B;  4WHO B;  3HJ8 A;  3PCM M;  1YKK B;  4WHR B;  3T63 M;  2BV0 B;  3PCF M;  3HKP A;  2BUQ B;  3I4V A;  1YKN B;  2BUY A;  2BUX B;  2BUU A;  3PCJ A;  3O6R A;  3LXV M;  3I4Y A;  2BUW A;  3PCC M;  1DLM A;  1YKL B;  3PCI A;  3PCB M;  3LKT A;  3PCA M;  2BOY A;  4WHR A;  3O5U A;  1DMH A;  3T67 A;  3HJS A;  2BUY B;  2BUU B;  3PCH M; 
#chains in the Genus database with same CATH topology
 1DLT A;  1YKL A;  3N9T A;  2BUW B;  3MI1 M;  3LMX M;  3MFL M;  3PCE M;  3PCG M;  5TD3 A;  1EOC A;  3MV6 A;  3PCD A;  3HHX A;  3HGI A;  3LXV A;  1S9A A;  3I51 A;  3MV4 A;  1EO2 A;  3PCN M;  4ILT A;  3PCB A;  3TH1 A;  2XSU A;  3MI5 A;  3HHY A;  3O6J A;  3PCK A;  1EOC B;  3PCL A;  1YKP A;  1EO9 A;  3PCH A;  1EO2 B;  3PCJ M;  3PCM A;  3T63 A;  2PCD M;  3PCF A;  4WHP B;  3PCI M;  3LKT M;  1EOB A;  1EO9 B;  1YKP B;  3PCC A;  4WHP D;  3T67 M;  2XSR A;  4WHR F;  3PCA A;  2BUM A;  1YKM A;  1EOA A;  4WHP A;  2BUR B;  2AZQ A;  2BUT B;  3O32 A;  2BUZ B;  2BUV A;  4WHQ A;  1EOB B;  3MI1 A;  3MV6 M;  3PCD M;  3LMX A;  3MFL A;  1DLQ A;  4WHO D;  4WHS D;  4ILV A;  3PCE A;  2XSV A;  2BUR A;  2BUM B;  3PCG A;  1YKM B;  3MV4 M;  2PCD A;  1EOA B;  4WHS A;  4WHO A;  2BUT A;  1YKO B;  1YKK A;  2BUZ A;  3HJQ A;  3MI5 M;  2BV0 A;  3PCK M;  2BUV B;  2BUQ A;  1TMX A;  3PCN A;  4WHQ B;  1YKN A;  2BUX A;  3PCL M;  1YKO A;  4WHS B;  4WHO B;  3HJ8 A;  3PCM M;  1YKK B;  4WHR B;  3T63 M;  2BV0 B;  3PCF M;  3HKP A;  2BUQ B;  3I4V A;  1YKN B;  2BUY A;  2BUX B;  2BUU A;  3PCJ A;  3O6R A;  3LXV M;  3I4Y A;  2BUW A;  3PCC M;  1DLM A;  1YKL B;  3PCI A;  3PCB M;  3LKT A;  3PCA M;  2BOY A;  4WHR A;  3O5U A;  1DMH A;  3T67 A;  3HJS A;  2BUY B;  2BUU B;  3PCH M; 
#chains in the Genus database with same CATH homology
 1DLT A;  1YKL A;  3N9T A;  2BUW B;  3MI1 M;  3LMX M;  3MFL M;  3PCE M;  3PCG M;  5TD3 A;  1EOC A;  3MV6 A;  3PCD A;  3HHX A;  3HGI A;  3LXV A;  1S9A A;  3I51 A;  3MV4 A;  1EO2 A;  3PCN M;  4ILT A;  3PCB A;  3TH1 A;  2XSU A;  3MI5 A;  3HHY A;  3O6J A;  3PCK A;  1EOC B;  3PCL A;  1YKP A;  1EO9 A;  3PCH A;  1EO2 B;  3PCJ M;  3PCM A;  3T63 A;  2PCD M;  3PCF A;  4WHP B;  3PCI M;  3LKT M;  1EOB A;  1EO9 B;  1YKP B;  3PCC A;  4WHP D;  3T67 M;  2XSR A;  4WHR F;  3PCA A;  2BUM A;  1YKM A;  1EOA A;  4WHP A;  2BUR B;  2AZQ A;  2BUT B;  3O32 A;  2BUZ B;  2BUV A;  4WHQ A;  1EOB B;  3MI1 A;  3MV6 M;  3PCD M;  3LMX A;  3MFL A;  1DLQ A;  4WHO D;  4WHS D;  4ILV A;  3PCE A;  2XSV A;  2BUR A;  2BUM B;  3PCG A;  1YKM B;  3MV4 M;  2PCD A;  1EOA B;  4WHS A;  4WHO A;  2BUT A;  1YKO B;  1YKK A;  2BUZ A;  3HJQ A;  3MI5 M;  2BV0 A;  3PCK M;  2BUV B;  2BUQ A;  1TMX A;  3PCN A;  4WHQ B;  1YKN A;  2BUX A;  3PCL M;  1YKO A;  4WHS B;  4WHO B;  3HJ8 A;  3PCM M;  1YKK B;  4WHR B;  3T63 M;  2BV0 B;  3PCF M;  3HKP A;  2BUQ B;  3I4V A;  1YKN B;  2BUY A;  2BUX B;  2BUU A;  3PCJ A;  3O6R A;  3LXV M;  3I4Y A;  2BUW A;  3PCC M;  1DLM A;  1YKL B;  3PCI A;  3PCB M;  3LKT A;  3PCA M;  2BOY A;  4WHR A;  3O5U A;  1DMH A;  3T67 A;  3HJS A;  2BUY B;  2BUU B;  3PCH M;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2BOYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations