2BOYA

Crystal structure of 3-chlorocatechol 1,2-dioxygenase from rhodococcus opacus 1cp
Total Genus 70

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
70
sequence length
253
structure length
253
Chain Sequence
STDRTGNIVGKMIAAINAVIKDEKVSYSEYKASTGWLISVGEKNEWPLFLDVFFEHAIESVAAESNRGSQSSIQGPYFIPGAPELSIPYTMPMRDDESGDTLIFRGEVVDQEGAPLADVLLDMWQADAAGEYSFINPTLPDYLFRGKIRTDENGRFTLRTIVPAPYEIPKNGPTGALLAAAGWHAWRPAHLHWIIAKEGYESLTTQLYFENGQWTGSDVANAVKPELLLSLDKIEAQSGPHFETSYKFTLGKV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH2 (28-44)TI6 (170-173)EMPTYTI9 (219-222)TII3 (143-146)TIV1 (87-90)S3 (146-151)S4 (156-162)TI1 (95-98)S1 (102-110)TI5 (152-155)S7 (191-198)TII1 (117-120)S2 (120-126)TII2 (141-144)TIV2 (133-136)TVIII1 (135-138)TI4 (137-140)S5 (167-168)TIV4 (216-219)S6 (187-188)TI8 (215-218)TII4 (198-201)S12 (252-253)S8 (201-210)TI10 (225-228)TI7 (210-213)TII5 (213-216)S11 (241-250)S9 (229-230)S10 (233-236)AH4 (174-182)TI2 (111-114)TI3 (128-131)AH1 (3-24)AH3 (46-65)Updating...
connected with : NaN
publication title Crystal structure of 3-chlorocatechol 1,2-dioxygenase key enzyme of a new modified ortho-pathway from the Gram-positive Rhodococcus opacus 1CP grown on 2-chlorophenol.
pubmed doi rcsb
molecule keywords 3-CHLOROCATECHOL 1,2-DIOXYGENASE
molecule tags Oxidoreductase
total genus 70
structure length 253
sequence length 253
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 1.13.11.1: Catechol 1,2-dioxygenase.
pdb deposition date 2005-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00775 Dioxygenase_C Dioxygenase
A PF04444 Dioxygenase_N Catechol dioxygenase N terminus
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2boyA00
1DLTA 1YKLA 3N9TA 2BUWB 3MI1M 3LMXM 3MFLM 3PCEM 3PCGM 5TD3A 1EOCA 3MV6A 3PCDA 3HHXA 3HGIA 3LXVA 1S9AA 3I51A 3MV4A 1EO2A 3PCNM 4ILTA 3PCBA 3TH1A 2XSUA 3MI5A 3HHYA 3O6JA 3PCKA 1EOCB 3PCLA 1YKPA 1EO9A 3PCHA 1EO2B 3PCJM 3PCMA 3T63A 2PCDM 3PCFA 4WHPB 3PCIM 3LKTM 1EOBA 1EO9B 1YKPB 3PCCA 4WHPD 3T67M 2XSRA 4WHRF 3PCAA 2BUMA 1YKMA 1EOAA 4WHPA 2BURB 2AZQA 2BUTB 3O32A 2BUZB 2BUVA 4WHQA 1EOBB 3MI1A 3MV6M 3PCDM 3LMXA 3MFLA 1DLQA 4WHOD 4WHSD 4ILVA 3PCEA 2XSVA 2BURA 2BUMB 3PCGA 1YKMB 3MV4M 2PCDA 1EOAB 4WHSA 4WHOA 2BUTA 1YKOB 1YKKA 2BUZA 3HJQA 3MI5M 2BV0A 3PCKM 2BUVB 2BUQA 1TMXA 3PCNA 4WHQB 1YKNA 2BUXA 3PCLM 1YKOA 4WHSB 4WHOB 3HJ8A 3PCMM 1YKKB 4WHRB 3T63M 2BV0B 3PCFM 3HKPA 2BUQB 3I4VA 1YKNB 2BUYA 2BUXB 2BUUA 3PCJA 3O6RA 3LXVM 3I4YA 2BUWA 3PCCM 1DLMA 1YKLB 3PCIA 3PCBM 3LKTA 3PCAM 2BOYA 4WHRA 3O5UA 1DMHA 3T67A 3HJSA 2BUYB 2BUUB 3PCHM
chains in the Genus database with same CATH superfamily
1DLTA 1YKLA 3N9TA 2BUWB 3MI1M 3LMXM 3MFLM 3PCEM 3PCGM 5TD3A 1EOCA 3MV6A 3PCDA 3HHXA 3HGIA 3LXVA 1S9AA 3I51A 3MV4A 1EO2A 3PCNM 4ILTA 3PCBA 3TH1A 2XSUA 3MI5A 3HHYA 3O6JA 3PCKA 1EOCB 3PCLA 1YKPA 1EO9A 3PCHA 1EO2B 3PCJM 3PCMA 3T63A 2PCDM 3PCFA 4WHPB 3PCIM 3LKTM 1EOBA 1EO9B 1YKPB 3PCCA 4WHPD 3T67M 2XSRA 4WHRF 3PCAA 2BUMA 1YKMA 1EOAA 4WHPA 2BURB 2AZQA 2BUTB 3O32A 2BUZB 2BUVA 4WHQA 1EOBB 3MI1A 3MV6M 3PCDM 3LMXA 3MFLA 1DLQA 4WHOD 4WHSD 4ILVA 3PCEA 2XSVA 2BURA 2BUMB 3PCGA 1YKMB 3MV4M 2PCDA 1EOAB 4WHSA 4WHOA 2BUTA 1YKOB 1YKKA 2BUZA 3HJQA 3MI5M 2BV0A 3PCKM 2BUVB 2BUQA 1TMXA 3PCNA 4WHQB 1YKNA 2BUXA 3PCLM 1YKOA 4WHSB 4WHOB 3HJ8A 3PCMM 1YKKB 4WHRB 3T63M 2BV0B 3PCFM 3HKPA 2BUQB 3I4VA 1YKNB 2BUYA 2BUXB 2BUUA 3PCJA 3O6RA 3LXVM 3I4YA 2BUWA 3PCCM 1DLMA 1YKLB 3PCIA 3PCBM 3LKTA 3PCAM 2BOYA 4WHRA 3O5UA 1DMHA 3T67A 3HJSA 2BUYB 2BUUB 3PCHM
chains in the Genus database with same CATH topology
1DLTA 1YKLA 3N9TA 2BUWB 3MI1M 3LMXM 3MFLM 3PCEM 3PCGM 5TD3A 1EOCA 3MV6A 3PCDA 3HHXA 3HGIA 3LXVA 1S9AA 3I51A 3MV4A 1EO2A 3PCNM 4ILTA 3PCBA 3TH1A 2XSUA 3MI5A 3HHYA 3O6JA 3PCKA 1EOCB 3PCLA 1YKPA 1EO9A 3PCHA 1EO2B 3PCJM 3PCMA 3T63A 2PCDM 3PCFA 4WHPB 3PCIM 3LKTM 1EOBA 1EO9B 1YKPB 3PCCA 4WHPD 3T67M 2XSRA 4WHRF 3PCAA 2BUMA 1YKMA 1EOAA 4WHPA 2BURB 2AZQA 2BUTB 3O32A 2BUZB 2BUVA 4WHQA 1EOBB 3MI1A 3MV6M 3PCDM 3LMXA 3MFLA 1DLQA 4WHOD 4WHSD 4ILVA 3PCEA 2XSVA 2BURA 2BUMB 3PCGA 1YKMB 3MV4M 2PCDA 1EOAB 4WHSA 4WHOA 2BUTA 1YKOB 1YKKA 2BUZA 3HJQA 3MI5M 2BV0A 3PCKM 2BUVB 2BUQA 1TMXA 3PCNA 4WHQB 1YKNA 2BUXA 3PCLM 1YKOA 4WHSB 4WHOB 3HJ8A 3PCMM 1YKKB 4WHRB 3T63M 2BV0B 3PCFM 3HKPA 2BUQB 3I4VA 1YKNB 2BUYA 2BUXB 2BUUA 3PCJA 3O6RA 3LXVM 3I4YA 2BUWA 3PCCM 1DLMA 1YKLB 3PCIA 3PCBM 3LKTA 3PCAM 2BOYA 4WHRA 3O5UA 1DMHA 3T67A 3HJSA 2BUYB 2BUUB 3PCHM
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1DLT A;  1YKL A;  3N9T A;  2BUW B;  3MI1 M;  3LMX M;  3MFL M;  3PCE M;  3PCG M;  5TD3 A;  1EOC A;  3MV6 A;  3PCD A;  3HHX A;  3HGI A;  3LXV A;  1S9A A;  3I51 A;  3MV4 A;  1EO2 A;  3PCN M;  4ILT A;  3PCB A;  3TH1 A;  2XSU A;  3MI5 A;  3HHY A;  3O6J A;  3PCK A;  1EOC B;  3PCL A;  1YKP A;  1EO9 A;  3PCH A;  1EO2 B;  3PCJ M;  3PCM A;  3T63 A;  2PCD M;  3PCF A;  4WHP B;  3PCI M;  3LKT M;  1EOB A;  1EO9 B;  1YKP B;  3PCC A;  4WHP D;  3T67 M;  2XSR A;  4WHR F;  3PCA A;  2BUM A;  1YKM A;  1EOA A;  4WHP A;  2BUR B;  2AZQ A;  2BUT B;  3O32 A;  2BUZ B;  2BUV A;  4WHQ A;  1EOB B;  3MI1 A;  3MV6 M;  3PCD M;  3LMX A;  3MFL A;  1DLQ A;  4WHO D;  4WHS D;  4ILV A;  3PCE A;  2XSV A;  2BUR A;  2BUM B;  3PCG A;  1YKM B;  3MV4 M;  2PCD A;  1EOA B;  4WHS A;  4WHO A;  2BUT A;  1YKO B;  1YKK A;  2BUZ A;  3HJQ A;  3MI5 M;  2BV0 A;  3PCK M;  2BUV B;  2BUQ A;  1TMX A;  3PCN A;  4WHQ B;  1YKN A;  2BUX A;  3PCL M;  1YKO A;  4WHS B;  4WHO B;  3HJ8 A;  3PCM M;  1YKK B;  4WHR B;  3T63 M;  2BV0 B;  3PCF M;  3HKP A;  2BUQ B;  3I4V A;  1YKN B;  2BUY A;  2BUX B;  2BUU A;  3PCJ A;  3O6R A;  3LXV M;  3I4Y A;  2BUW A;  3PCC M;  1DLM A;  1YKL B;  3PCI A;  3PCB M;  3LKT A;  3PCA M;  2BOY A;  4WHR A;  3O5U A;  1DMH A;  3T67 A;  3HJS A;  2BUY B;  2BUU B;  3PCH M; 
#chains in the Genus database with same CATH topology
 1DLT A;  1YKL A;  3N9T A;  2BUW B;  3MI1 M;  3LMX M;  3MFL M;  3PCE M;  3PCG M;  5TD3 A;  1EOC A;  3MV6 A;  3PCD A;  3HHX A;  3HGI A;  3LXV A;  1S9A A;  3I51 A;  3MV4 A;  1EO2 A;  3PCN M;  4ILT A;  3PCB A;  3TH1 A;  2XSU A;  3MI5 A;  3HHY A;  3O6J A;  3PCK A;  1EOC B;  3PCL A;  1YKP A;  1EO9 A;  3PCH A;  1EO2 B;  3PCJ M;  3PCM A;  3T63 A;  2PCD M;  3PCF A;  4WHP B;  3PCI M;  3LKT M;  1EOB A;  1EO9 B;  1YKP B;  3PCC A;  4WHP D;  3T67 M;  2XSR A;  4WHR F;  3PCA A;  2BUM A;  1YKM A;  1EOA A;  4WHP A;  2BUR B;  2AZQ A;  2BUT B;  3O32 A;  2BUZ B;  2BUV A;  4WHQ A;  1EOB B;  3MI1 A;  3MV6 M;  3PCD M;  3LMX A;  3MFL A;  1DLQ A;  4WHO D;  4WHS D;  4ILV A;  3PCE A;  2XSV A;  2BUR A;  2BUM B;  3PCG A;  1YKM B;  3MV4 M;  2PCD A;  1EOA B;  4WHS A;  4WHO A;  2BUT A;  1YKO B;  1YKK A;  2BUZ A;  3HJQ A;  3MI5 M;  2BV0 A;  3PCK M;  2BUV B;  2BUQ A;  1TMX A;  3PCN A;  4WHQ B;  1YKN A;  2BUX A;  3PCL M;  1YKO A;  4WHS B;  4WHO B;  3HJ8 A;  3PCM M;  1YKK B;  4WHR B;  3T63 M;  2BV0 B;  3PCF M;  3HKP A;  2BUQ B;  3I4V A;  1YKN B;  2BUY A;  2BUX B;  2BUU A;  3PCJ A;  3O6R A;  3LXV M;  3I4Y A;  2BUW A;  3PCC M;  1DLM A;  1YKL B;  3PCI A;  3PCB M;  3LKT A;  3PCA M;  2BOY A;  4WHR A;  3O5U A;  1DMH A;  3T67 A;  3HJS A;  2BUY B;  2BUU B;  3PCH M; 
#chains in the Genus database with same CATH homology
 1DLT A;  1YKL A;  3N9T A;  2BUW B;  3MI1 M;  3LMX M;  3MFL M;  3PCE M;  3PCG M;  5TD3 A;  1EOC A;  3MV6 A;  3PCD A;  3HHX A;  3HGI A;  3LXV A;  1S9A A;  3I51 A;  3MV4 A;  1EO2 A;  3PCN M;  4ILT A;  3PCB A;  3TH1 A;  2XSU A;  3MI5 A;  3HHY A;  3O6J A;  3PCK A;  1EOC B;  3PCL A;  1YKP A;  1EO9 A;  3PCH A;  1EO2 B;  3PCJ M;  3PCM A;  3T63 A;  2PCD M;  3PCF A;  4WHP B;  3PCI M;  3LKT M;  1EOB A;  1EO9 B;  1YKP B;  3PCC A;  4WHP D;  3T67 M;  2XSR A;  4WHR F;  3PCA A;  2BUM A;  1YKM A;  1EOA A;  4WHP A;  2BUR B;  2AZQ A;  2BUT B;  3O32 A;  2BUZ B;  2BUV A;  4WHQ A;  1EOB B;  3MI1 A;  3MV6 M;  3PCD M;  3LMX A;  3MFL A;  1DLQ A;  4WHO D;  4WHS D;  4ILV A;  3PCE A;  2XSV A;  2BUR A;  2BUM B;  3PCG A;  1YKM B;  3MV4 M;  2PCD A;  1EOA B;  4WHS A;  4WHO A;  2BUT A;  1YKO B;  1YKK A;  2BUZ A;  3HJQ A;  3MI5 M;  2BV0 A;  3PCK M;  2BUV B;  2BUQ A;  1TMX A;  3PCN A;  4WHQ B;  1YKN A;  2BUX A;  3PCL M;  1YKO A;  4WHS B;  4WHO B;  3HJ8 A;  3PCM M;  1YKK B;  4WHR B;  3T63 M;  2BV0 B;  3PCF M;  3HKP A;  2BUQ B;  3I4V A;  1YKN B;  2BUY A;  2BUX B;  2BUU A;  3PCJ A;  3O6R A;  3LXV M;  3I4Y A;  2BUW A;  3PCC M;  1DLM A;  1YKL B;  3PCI A;  3PCB M;  3LKT A;  3PCA M;  2BOY A;  4WHR A;  3O5U A;  1DMH A;  3T67 A;  3HJS A;  2BUY B;  2BUU B;  3PCH M; 
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