2BUZ | Genus

Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	54
sequence length	238
structure length	238
Chain Sequence	IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

publication title	Crystallographic Studies of Intradiol Dioxygenases rcsb
molecule keywords	PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags	Oxidoreductase
source organism	Acinetobacter calcoaceticus
total genus	54
structure length	238
sequence length	238
ec nomenclature	ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date	2005-06-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00775	Dioxygenase_C	Dioxygenase
B	PF12391	PCDO_beta_N	Protocatechuate 3,4-dioxygenase beta subunit N terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.130.10	Mainly Beta	Sandwich	Protocatechuate 3,4-Dioxygenase, subunit A	Aromatic compound dioxygenase	2buzB00

1YKNB 4WHOD 4ILVA 3T67M 3I51A 2BUWB 3MV4A 3PCNA 1EOAA 3HHXA 4WHRA 3LXVM 3PCLA 2BUQA 4WHSD 3PCEM 1YKMA 3PCKM 3PCCM 4WHQA 2BUZB 1YKLB 3MI5M 1DLMA 3PCGM 2BUUA 1YKMB 3PCAM 4WHPD 1EOCB 3LXVA 3PCEA 3MV4M 4WHOB 2PCDA 3I4VA 3PCLM 3O6RA 4WHRF 3PCAA 2BUWA 3O5UA 1YKOB 2BURB 3PCDA 2BUZA 1YKLA 1TMXA 2PCDM 3HJQA 3PCIA 1YKPB 1EOCA 1EOBA 3HGIA 3HJ8A 2XSVA 2BUMA 3MV6A 2BV0B 5TD3A 1EO9B 3N9TA 4WHOA 1EOBB 2BUXB 2BUMB 3PCDM 4WHSA 1EO2B 3PCJA 1DLQA 3PCIM 1YKOA 2BURA 4WHSB 3TH1A 2BUVB 3MFLM 2XSRA 4WHPA 3MV6M 3PCHM 3PCFA 4ILTA 3HJSA 1YKPA 4WHPB 3PCBA 2BV0A 1EO9A 2BUTB 3MFLA 2BUXA 3PCJM 3I4YA 3PCHA 2AZQA 3T63A 1EO2A 3O6JA 3PCMM 2XSUA 2BUYB 2BOYA 3PCFM 3HKPA 1DLTA 2BUVA 3PCBM 3MI1A 1S9AA 1DMHA 3O32A 1EOAB 3PCMA 4WHRB 1YKKA 3T67A 2BUQB 3T63M 2BUTA 3LKTM 3LMXM 4WHQB 1YKKB 2BUUB 3PCNM 3MI1M 3PCCA 3PCKA 3HHYA 3MI5A 1YKNA 2BUYA 3PCGA 3LKTA 3LMXA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1YKN B;  4WHO D;  4ILV A;  3T67 M;  3I51 A;  2BUW B;  3MV4 A;  3PCN A;  1EOA A;  3HHX A;  4WHR A;  3LXV M;  3PCL A;  2BUQ A;  4WHS D;  3PCE M;  1YKM A;  3PCK M;  3PCC M;  4WHQ A;  2BUZ B;  1YKL B;  3MI5 M;  1DLM A;  3PCG M;  2BUU A;  1YKM B;  3PCA M;  4WHP D;  1EOC B;  3LXV A;  3PCE A;  3MV4 M;  4WHO B;  2PCD A;  3I4V A;  3PCL M;  3O6R A;  4WHR F;  3PCA A;  2BUW A;  3O5U A;  1YKO B;  2BUR B;  3PCD A;  2BUZ A;  1YKL A;  1TMX A;  2PCD M;  3HJQ A;  3PCI A;  1YKP B;  1EOC A;  1EOB A;  3HGI A;  3HJ8 A;  2XSV A;  2BUM A;  3MV6 A;  2BV0 B;  5TD3 A;  1EO9 B;  3N9T A;  4WHO A;  1EOB B;  2BUX B;  2BUM B;  3PCD M;  4WHS A;  1EO2 B;  3PCJ A;  1DLQ A;  3PCI M;  1YKO A;  2BUR A;  4WHS B;  3TH1 A;  2BUV B;  3MFL M;  2XSR A;  4WHP A;  3MV6 M;  3PCH M;  3PCF A;  4ILT A;  3HJS A;  1YKP A;  4WHP B;  3PCB A;  2BV0 A;  1EO9 A;  2BUT B;  3MFL A;  2BUX A;  3PCJ M;  3I4Y A;  3PCH A;  2AZQ A;  3T63 A;  1EO2 A;  3O6J A;  3PCM M;  2XSU A;  2BUY B;  2BOY A;  3PCF M;  3HKP A;  1DLT A;  2BUV A;  3PCB M;  3MI1 A;  1S9A A;  1DMH A;  3O32 A;  1EOA B;  3PCM A;  4WHR B;  1YKK A;  3T67 A;  2BUQ B;  3T63 M;  2BUT A;  3LKT M;  3LMX M;  4WHQ B;  1YKK B;  2BUU B;  3PCN M;  3MI1 M;  3PCC A;  3PCK A;  3HHY A;  3MI5 A;  1YKN A;  2BUY A;  3PCG A;  3LKT A;  3LMX A; 
#chains in the Genus database with same CATH topology
 1YKN B;  4WHO D;  4ILV A;  3T67 M;  3I51 A;  2BUW B;  3MV4 A;  3PCN A;  1EOA A;  3HHX A;  4WHR A;  3LXV M;  3PCL A;  2BUQ A;  4WHS D;  3PCE M;  1YKM A;  3PCK M;  3PCC M;  4WHQ A;  2BUZ B;  1YKL B;  3MI5 M;  1DLM A;  3PCG M;  2BUU A;  1YKM B;  3PCA M;  4WHP D;  1EOC B;  3LXV A;  3PCE A;  3MV4 M;  4WHO B;  2PCD A;  3I4V A;  3PCL M;  3O6R A;  4WHR F;  3PCA A;  2BUW A;  3O5U A;  1YKO B;  2BUR B;  3PCD A;  2BUZ A;  1YKL A;  1TMX A;  2PCD M;  3HJQ A;  3PCI A;  1YKP B;  1EOC A;  1EOB A;  3HGI A;  3HJ8 A;  2XSV A;  2BUM A;  3MV6 A;  2BV0 B;  5TD3 A;  1EO9 B;  3N9T A;  4WHO A;  1EOB B;  2BUX B;  2BUM B;  3PCD M;  4WHS A;  1EO2 B;  3PCJ A;  1DLQ A;  3PCI M;  1YKO A;  2BUR A;  4WHS B;  3TH1 A;  2BUV B;  3MFL M;  2XSR A;  4WHP A;  3MV6 M;  3PCH M;  3PCF A;  4ILT A;  3HJS A;  1YKP A;  4WHP B;  3PCB A;  2BV0 A;  1EO9 A;  2BUT B;  3MFL A;  2BUX A;  3PCJ M;  3I4Y A;  3PCH A;  2AZQ A;  3T63 A;  1EO2 A;  3O6J A;  3PCM M;  2XSU A;  2BUY B;  2BOY A;  3PCF M;  3HKP A;  1DLT A;  2BUV A;  3PCB M;  3MI1 A;  1S9A A;  1DMH A;  3O32 A;  1EOA B;  3PCM A;  4WHR B;  1YKK A;  3T67 A;  2BUQ B;  3T63 M;  2BUT A;  3LKT M;  3LMX M;  4WHQ B;  1YKK B;  2BUU B;  3PCN M;  3MI1 M;  3PCC A;  3PCK A;  3HHY A;  3MI5 A;  1YKN A;  2BUY A;  3PCG A;  3LKT A;  3LMX A; 
#chains in the Genus database with same CATH homology
 1YKN B;  4WHO D;  4ILV A;  3T67 M;  3I51 A;  2BUW B;  3MV4 A;  3PCN A;  1EOA A;  3HHX A;  4WHR A;  3LXV M;  3PCL A;  2BUQ A;  4WHS D;  3PCE M;  1YKM A;  3PCK M;  3PCC M;  4WHQ A;  2BUZ B;  1YKL B;  3MI5 M;  1DLM A;  3PCG M;  2BUU A;  1YKM B;  3PCA M;  4WHP D;  1EOC B;  3LXV A;  3PCE A;  3MV4 M;  4WHO B;  2PCD A;  3I4V A;  3PCL M;  3O6R A;  4WHR F;  3PCA A;  2BUW A;  3O5U A;  1YKO B;  2BUR B;  3PCD A;  2BUZ A;  1YKL A;  1TMX A;  2PCD M;  3HJQ A;  3PCI A;  1YKP B;  1EOC A;  1EOB A;  3HGI A;  3HJ8 A;  2XSV A;  2BUM A;  3MV6 A;  2BV0 B;  5TD3 A;  1EO9 B;  3N9T A;  4WHO A;  1EOB B;  2BUX B;  2BUM B;  3PCD M;  4WHS A;  1EO2 B;  3PCJ A;  1DLQ A;  3PCI M;  1YKO A;  2BUR A;  4WHS B;  3TH1 A;  2BUV B;  3MFL M;  2XSR A;  4WHP A;  3MV6 M;  3PCH M;  3PCF A;  4ILT A;  3HJS A;  1YKP A;  4WHP B;  3PCB A;  2BV0 A;  1EO9 A;  2BUT B;  3MFL A;  2BUX A;  3PCJ M;  3I4Y A;  3PCH A;  2AZQ A;  3T63 A;  1EO2 A;  3O6J A;  3PCM M;  2XSU A;  2BUY B;  2BOY A;  3PCF M;  3HKP A;  1DLT A;  2BUV A;  3PCB M;  3MI1 A;  1S9A A;  1DMH A;  3O32 A;  1EOA B;  3PCM A;  4WHR B;  1YKK A;  3T67 A;  2BUQ B;  3T63 M;  2BUT A;  3LKT M;  3LMX M;  4WHQ B;  1YKK B;  2BUU B;  3PCN M;  3MI1 M;  3PCC A;  3PCK A;  3HHY A;  3MI5 A;  1YKN A;  2BUY A;  3PCG A;  3LKT A;  3LMX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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2BUZB

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations