2BUZB

Crystal structure of protocatechuate 3,4-dioxygenase from acinetobacter sp. adp1 mutant r133h in complex with 4-nitrocatechol
Total Genus 54

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
238
structure length
238
Chain Sequence
IIWGAYAQRNTEDHPPAYAPGYKTSVLRSPKNALISIAETLSEVTAPHFSADKFGPKDNDLILNYAKDGLPIGERVIVHGYVRDQFGRPVKNALVEVWQANASGRYRHPNDQYIGAMDPNFGGCGRMLTDDNGYYVFRTIKPGPYPWRNRINEWRPAHIHFSLIADGWAQRLISQFYFEGDTLIDSCPILKTIPSEQQRRALIALEDKSNFIEADSRCYRFDITLRGRRATYFENDLT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystallographic Studies of Intradiol Dioxygenases
rcsb
molecule keywords PROTOCATECHUATE 3,4-DIOXYGENASE ALPHA CHAIN
molecule tags Oxidoreductase
source organism Acinetobacter calcoaceticus
total genus 54
structure length 238
sequence length 238
ec nomenclature ec 1.13.11.3: Protocatechuate 3,4-dioxygenase.
pdb deposition date 2005-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00775 Dioxygenase_C Dioxygenase
B PF12391 PCDO_beta_N Protocatechuate 3,4-dioxygenase beta subunit N terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.130.10 Mainly Beta Sandwich Protocatechuate 3,4-Dioxygenase, subunit A Aromatic compound dioxygenase 2buzB00
4WHQA 3I4YA 3HHXA 1YKKA 2BUMA 3MFLA 2AZQA 1DMHA 2BUXA 2BUUA 3PCBA 3PCIM 3O6JA 3O5UA 1EOAA 3PCDA 3LMXA 1EOBB 3PCLA 1YKNB 2BV0A 3T67A 3LKTA 3MV4M 3TH1A 2BURA 3O6RA 3PCEA 1EOBA 3I4VA 4WHOD 3PCCM 3LXVM 1YKMA 3PCNM 2BUVA 1YKPB 3PCMM 1EO2A 3LMXM 1DLTA 4WHOB 4WHRB 4WHSD 3T63M 3PCHM 3PCKM 3PCJA 3PCGM 2PCDA 3PCAA 1YKPA 4WHOA 3MV6A 4WHSB 2XSUA 3MI1A 2BUWB 1EO9B 1S9AA 3HJ8A 4WHPD 2BUZB 4WHSA 3N9TA 3MFLM 1YKNA 4WHRF 3MI5A 2BUTB 3I51A 3PCBM 1YKLB 3PCFA 3HJQA 1TMXA 4WHPB 3HHYA 3PCDM 1EOCB 2BUQB 2BUTA 3PCLM 3HKPA 3T67M 2BOYA 3PCIA 4WHPA 3HGIA 3LKTM 1YKOB 2BUYB 4WHRA 2BUQA 4WHQB 4ILTA 1DLMA 3PCEM 4ILVA 3PCFM 1DLQA 3HJSA 1EOAB 3MV4A 2BUWA 3PCCA 1EO9A 3LXVA 3PCJM 2XSVA 3PCNA 2PCDM 3PCAM 2BUZA 2BV0B 3O32A 3PCMA 3MV6M 2BURB 3T63A 1YKLA 3MI1M 3PCHA 3PCKA 1YKMB 3PCGA 2BUVB 1EOCA 5TD3A 2XSRA 1YKKB 2BUMB 1EO2B 3MI5M 2BUXB 2BUUB 1YKOA 2BUYA
chains in the Genus database with same CATH superfamily
4WHQA 3I4YA 3HHXA 1YKKA 2BUMA 3MFLA 2AZQA 1DMHA 2BUXA 2BUUA 3PCBA 3PCIM 3O6JA 3O5UA 1EOAA 3PCDA 3LMXA 1EOBB 3PCLA 1YKNB 2BV0A 3T67A 3LKTA 3MV4M 3TH1A 2BURA 3O6RA 3PCEA 1EOBA 3I4VA 4WHOD 3PCCM 3LXVM 1YKMA 3PCNM 2BUVA 1YKPB 3PCMM 1EO2A 3LMXM 1DLTA 4WHOB 4WHRB 4WHSD 3T63M 3PCHM 3PCKM 3PCJA 3PCGM 2PCDA 3PCAA 1YKPA 4WHOA 3MV6A 4WHSB 2XSUA 3MI1A 2BUWB 1EO9B 1S9AA 3HJ8A 4WHPD 2BUZB 4WHSA 3N9TA 3MFLM 1YKNA 4WHRF 3MI5A 2BUTB 3I51A 3PCBM 1YKLB 3PCFA 3HJQA 1TMXA 4WHPB 3HHYA 3PCDM 1EOCB 2BUQB 2BUTA 3PCLM 3HKPA 3T67M 2BOYA 3PCIA 4WHPA 3HGIA 3LKTM 1YKOB 2BUYB 4WHRA 2BUQA 4WHQB 4ILTA 1DLMA 3PCEM 4ILVA 3PCFM 1DLQA 3HJSA 1EOAB 3MV4A 2BUWA 3PCCA 1EO9A 3LXVA 3PCJM 2XSVA 3PCNA 2PCDM 3PCAM 2BUZA 2BV0B 3O32A 3PCMA 3MV6M 2BURB 3T63A 1YKLA 3MI1M 3PCHA 3PCKA 1YKMB 3PCGA 2BUVB 1EOCA 5TD3A 2XSRA 1YKKB 2BUMB 1EO2B 3MI5M 2BUXB 2BUUB 1YKOA 2BUYA
chains in the Genus database with same CATH topology
4WHQA 3I4YA 3HHXA 1YKKA 2BUMA 3MFLA 2AZQA 1DMHA 2BUXA 2BUUA 3PCBA 3PCIM 3O6JA 3O5UA 1EOAA 3PCDA 3LMXA 1EOBB 3PCLA 1YKNB 2BV0A 3T67A 3LKTA 3MV4M 3TH1A 2BURA 3O6RA 3PCEA 1EOBA 3I4VA 4WHOD 3PCCM 3LXVM 1YKMA 3PCNM 2BUVA 1YKPB 3PCMM 1EO2A 3LMXM 1DLTA 4WHOB 4WHRB 4WHSD 3T63M 3PCHM 3PCKM 3PCJA 3PCGM 2PCDA 3PCAA 1YKPA 4WHOA 3MV6A 4WHSB 2XSUA 3MI1A 2BUWB 1EO9B 1S9AA 3HJ8A 4WHPD 2BUZB 4WHSA 3N9TA 3MFLM 1YKNA 4WHRF 3MI5A 2BUTB 3I51A 3PCBM 1YKLB 3PCFA 3HJQA 1TMXA 4WHPB 3HHYA 3PCDM 1EOCB 2BUQB 2BUTA 3PCLM 3HKPA 3T67M 2BOYA 3PCIA 4WHPA 3HGIA 3LKTM 1YKOB 2BUYB 4WHRA 2BUQA 4WHQB 4ILTA 1DLMA 3PCEM 4ILVA 3PCFM 1DLQA 3HJSA 1EOAB 3MV4A 2BUWA 3PCCA 1EO9A 3LXVA 3PCJM 2XSVA 3PCNA 2PCDM 3PCAM 2BUZA 2BV0B 3O32A 3PCMA 3MV6M 2BURB 3T63A 1YKLA 3MI1M 3PCHA 3PCKA 1YKMB 3PCGA 2BUVB 1EOCA 5TD3A 2XSRA 1YKKB 2BUMB 1EO2B 3MI5M 2BUXB 2BUUB 1YKOA 2BUYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4WHQ A;  3I4Y A;  3HHX A;  1YKK A;  2BUM A;  3MFL A;  2AZQ A;  1DMH A;  2BUX A;  2BUU A;  3PCB A;  3PCI M;  3O6J A;  3O5U A;  1EOA A;  3PCD A;  3LMX A;  1EOB B;  3PCL A;  1YKN B;  2BV0 A;  3T67 A;  3LKT A;  3MV4 M;  3TH1 A;  2BUR A;  3O6R A;  3PCE A;  1EOB A;  3I4V A;  4WHO D;  3PCC M;  3LXV M;  1YKM A;  3PCN M;  2BUV A;  1YKP B;  3PCM M;  1EO2 A;  3LMX M;  1DLT A;  4WHO B;  4WHR B;  4WHS D;  3T63 M;  3PCH M;  3PCK M;  3PCJ A;  3PCG M;  2PCD A;  3PCA A;  1YKP A;  4WHO A;  3MV6 A;  4WHS B;  2XSU A;  3MI1 A;  2BUW B;  1EO9 B;  1S9A A;  3HJ8 A;  4WHP D;  2BUZ B;  4WHS A;  3N9T A;  3MFL M;  1YKN A;  4WHR F;  3MI5 A;  2BUT B;  3I51 A;  3PCB M;  1YKL B;  3PCF A;  3HJQ A;  1TMX A;  4WHP B;  3HHY A;  3PCD M;  1EOC B;  2BUQ B;  2BUT A;  3PCL M;  3HKP A;  3T67 M;  2BOY A;  3PCI A;  4WHP A;  3HGI A;  3LKT M;  1YKO B;  2BUY B;  4WHR A;  2BUQ A;  4WHQ B;  4ILT A;  1DLM A;  3PCE M;  4ILV A;  3PCF M;  1DLQ A;  3HJS A;  1EOA B;  3MV4 A;  2BUW A;  3PCC A;  1EO9 A;  3LXV A;  3PCJ M;  2XSV A;  3PCN A;  2PCD M;  3PCA M;  2BUZ A;  2BV0 B;  3O32 A;  3PCM A;  3MV6 M;  2BUR B;  3T63 A;  1YKL A;  3MI1 M;  3PCH A;  3PCK A;  1YKM B;  3PCG A;  2BUV B;  1EOC A;  5TD3 A;  2XSR A;  1YKK B;  2BUM B;  1EO2 B;  3MI5 M;  2BUX B;  2BUU B;  1YKO A;  2BUY A; 
#chains in the Genus database with same CATH topology
 4WHQ A;  3I4Y A;  3HHX A;  1YKK A;  2BUM A;  3MFL A;  2AZQ A;  1DMH A;  2BUX A;  2BUU A;  3PCB A;  3PCI M;  3O6J A;  3O5U A;  1EOA A;  3PCD A;  3LMX A;  1EOB B;  3PCL A;  1YKN B;  2BV0 A;  3T67 A;  3LKT A;  3MV4 M;  3TH1 A;  2BUR A;  3O6R A;  3PCE A;  1EOB A;  3I4V A;  4WHO D;  3PCC M;  3LXV M;  1YKM A;  3PCN M;  2BUV A;  1YKP B;  3PCM M;  1EO2 A;  3LMX M;  1DLT A;  4WHO B;  4WHR B;  4WHS D;  3T63 M;  3PCH M;  3PCK M;  3PCJ A;  3PCG M;  2PCD A;  3PCA A;  1YKP A;  4WHO A;  3MV6 A;  4WHS B;  2XSU A;  3MI1 A;  2BUW B;  1EO9 B;  1S9A A;  3HJ8 A;  4WHP D;  2BUZ B;  4WHS A;  3N9T A;  3MFL M;  1YKN A;  4WHR F;  3MI5 A;  2BUT B;  3I51 A;  3PCB M;  1YKL B;  3PCF A;  3HJQ A;  1TMX A;  4WHP B;  3HHY A;  3PCD M;  1EOC B;  2BUQ B;  2BUT A;  3PCL M;  3HKP A;  3T67 M;  2BOY A;  3PCI A;  4WHP A;  3HGI A;  3LKT M;  1YKO B;  2BUY B;  4WHR A;  2BUQ A;  4WHQ B;  4ILT A;  1DLM A;  3PCE M;  4ILV A;  3PCF M;  1DLQ A;  3HJS A;  1EOA B;  3MV4 A;  2BUW A;  3PCC A;  1EO9 A;  3LXV A;  3PCJ M;  2XSV A;  3PCN A;  2PCD M;  3PCA M;  2BUZ A;  2BV0 B;  3O32 A;  3PCM A;  3MV6 M;  2BUR B;  3T63 A;  1YKL A;  3MI1 M;  3PCH A;  3PCK A;  1YKM B;  3PCG A;  2BUV B;  1EOC A;  5TD3 A;  2XSR A;  1YKK B;  2BUM B;  1EO2 B;  3MI5 M;  2BUX B;  2BUU B;  1YKO A;  2BUY A; 
#chains in the Genus database with same CATH homology
 4WHQ A;  3I4Y A;  3HHX A;  1YKK A;  2BUM A;  3MFL A;  2AZQ A;  1DMH A;  2BUX A;  2BUU A;  3PCB A;  3PCI M;  3O6J A;  3O5U A;  1EOA A;  3PCD A;  3LMX A;  1EOB B;  3PCL A;  1YKN B;  2BV0 A;  3T67 A;  3LKT A;  3MV4 M;  3TH1 A;  2BUR A;  3O6R A;  3PCE A;  1EOB A;  3I4V A;  4WHO D;  3PCC M;  3LXV M;  1YKM A;  3PCN M;  2BUV A;  1YKP B;  3PCM M;  1EO2 A;  3LMX M;  1DLT A;  4WHO B;  4WHR B;  4WHS D;  3T63 M;  3PCH M;  3PCK M;  3PCJ A;  3PCG M;  2PCD A;  3PCA A;  1YKP A;  4WHO A;  3MV6 A;  4WHS B;  2XSU A;  3MI1 A;  2BUW B;  1EO9 B;  1S9A A;  3HJ8 A;  4WHP D;  2BUZ B;  4WHS A;  3N9T A;  3MFL M;  1YKN A;  4WHR F;  3MI5 A;  2BUT B;  3I51 A;  3PCB M;  1YKL B;  3PCF A;  3HJQ A;  1TMX A;  4WHP B;  3HHY A;  3PCD M;  1EOC B;  2BUQ B;  2BUT A;  3PCL M;  3HKP A;  3T67 M;  2BOY A;  3PCI A;  4WHP A;  3HGI A;  3LKT M;  1YKO B;  2BUY B;  4WHR A;  2BUQ A;  4WHQ B;  4ILT A;  1DLM A;  3PCE M;  4ILV A;  3PCF M;  1DLQ A;  3HJS A;  1EOA B;  3MV4 A;  2BUW A;  3PCC A;  1EO9 A;  3LXV A;  3PCJ M;  2XSV A;  3PCN A;  2PCD M;  3PCA M;  2BUZ A;  2BV0 B;  3O32 A;  3PCM A;  3MV6 M;  2BUR B;  3T63 A;  1YKL A;  3MI1 M;  3PCH A;  3PCK A;  1YKM B;  3PCG A;  2BUV B;  1EOC A;  5TD3 A;  2XSR A;  1YKK B;  2BUM B;  1EO2 B;  3MI5 M;  2BUX B;  2BUU B;  1YKO A;  2BUY A; 
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