2I3P | Genus

Total Genus 51

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	51
sequence length	152
structure length	152
Chain Sequence	NTKYNKEFLLYLAGFVDGDGSIIAQIRPNQSYKFKHQLSLTFQVTQKTQRRWFLDKLVDEIGVGYVRDRGSVSDYILSEIKPLHNFLTQLQPFLKLKQKQANLVLKIIEQLPSAKESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRAVLD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 152 atoms

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152 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase/dna
source organism	Chlamydomonas reinhardtii
publication title	Homing endonuclease I-CreI derivatives with novel DNA target specificities. pubmed doi rcsb
molecule keywords	5'-D(GPCPAPAPAPTPCPGPTPCPGPTPGPAPGPAPCPAP*
total genus	51
structure length	152
sequence length	152
chains with identical sequence	B
ec nomenclature	ec 3.1.-.-:
pdb deposition date	2006-08-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00961	LAGLIDADG_1	LAGLIDADG endonuclease

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.28.10	Alpha Beta	Roll	Endonuclease I-creI	Homing endonucleases	2i3pA00

2EX5A 3FD2A 3C0XA 4UNBA 5A0WA 4AAEA 1R7MA 1VDEA 2XE0A 5A78A 5AKMA 1DFAA 3HYJA 1T9IA 3MXBB 4UNAA 3MIPA 3OOLA 5AK9A 2XE0B 3KO2A 4EFJA 1N3EA 2CW8A 4D6OA 5E5SA 5AKFA 2VS8A 4YISA 4LOXA 4AAFA 2VBLA 4UN8G 5E67A 2I3PA 1LWTA 1UM2A 4UN9A 2VBJA 2VBLB 4YITA 2VBNA 1EF0A 2QOJZ 1U0CA 1BP7A 2O7MA 3R7PA 4UN8A 1MOWA 3OORA 4AQUA 3MX9A 2DCHX 4UT0A 2VBNB 1B24A 1M5XA 5E63A 4AADA 1P8KZ 1T9JA 3EH8A 2VS7A 2FLDA 5A0MA 5E5OA 3QQYA 4UN7G 1U0DA 4D6NA 4AABA 2AB5A 4AAGA 4Z1ZA 3MXBA 2CW7A 2VBJB 5A77A 5A0MB 5A72A 2I3QA 5A74A 4Z1XA 4YHXA 3MXAA 3C0WA 4Z20A 1G9ZA 2VBOA 5AKNA 1JVAA 1DQ3A 4UN7A 3UVFA 1G9YA 3HYIA 1LWSA 3E54A 4UNCA 4AQXA 3MISA 4UN9G 4LQ0A 1N3FA 2VBOB 1AF5A
chains in the Genus database with same CATH superfamily

2EX5A 3FD2A 3C0XA 4UNBA 5A0WA 4AAEA 1R7MA 1VDEA 2XE0A 5A78A 5AKMA 1DFAA 3HYJA 1T9IA 3MXBB 4UNAA 3MIPA 3OOLA 5AK9A 2XE0B 4KZSA 3KO2A 4EFJA 1N3EA 2CW8A 4D6OA 5E5SA 5AKFA 2VS8A 4YISA 4LOXA 4AAFA 2VBLA 4UN8G 5E67A 2I3PA 1LWTA 1UM2A 4UN9A 2VBJA 2F4LA 2VBLB 4YITA 2VBNA 1EF0A 2QOJZ 1U0CA 1BP7A 2O7MA 3R7PA 4UN8A 1MOWA 3OORA 4AQUA 3MX9A 2DCHX 4UT0A 2VBNB 1B24A 1M5XA 5E63A 4AADA 1P8KZ 1T9JA 3EH8A 2VS7A 2FLDA 5A0MA 5E5OA 3QQYA 4UN7G 1U0DA 4D6NA 4AABA 2AB5A 4AAGA 4Z1ZA 3MXBA 2CW7A 2VBJB 5A77A 5A0MB 5A72A 2I3QA 5A74A 4Z1XA 4YHXA 3MXAA 3C0WA 4Z20A 1G9ZA 2VBOA 5AKNA 1JVAA 1DQ3A 4UN7A 3UVFA 1G9YA 3HYIA 1LWSA 3E54A 4UNCA 4AQXA 3MISA 4UN9G 4LQ0A 1N3FA 2VBOB 1AF5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2EX5 A;  3FD2 A;  3C0X A;  4UNB A;  5A0W A;  4AAE A;  1R7M A;  1VDE A;  2XE0 A;  5A78 A;  5AKM A;  1DFA A;  3HYJ A;  1T9I A;  3MXB B;  4UNA A;  3MIP A;  3OOL A;  5AK9 A;  2XE0 B;  3KO2 A;  4EFJ A;  1N3E A;  2CW8 A;  4D6O A;  5E5S A;  5AKF A;  2VS8 A;  4YIS A;  4LOX A;  4AAF A;  2VBL A;  4UN8 G;  5E67 A;  2I3P A;  1LWT A;  1UM2 A;  4UN9 A;  2VBJ A;  2VBL B;  4YIT A;  2VBN A;  1EF0 A;  2QOJ Z;  1U0C A;  1BP7 A;  2O7M A;  3R7P A;  4UN8 A;  1MOW A;  3OOR A;  4AQU A;  3MX9 A;  2DCH X;  4UT0 A;  2VBN B;  1B24 A;  1M5X A;  5E63 A;  4AAD A;  1P8K Z;  1T9J A;  3EH8 A;  2VS7 A;  2FLD A;  5A0M A;  5E5O A;  3QQY A;  4UN7 G;  1U0D A;  4D6N A;  4AAB A;  2AB5 A;  4AAG A;  4Z1Z A;  3MXB A;  2CW7 A;  2VBJ B;  5A77 A;  5A0M B;  5A72 A;  2I3Q A;  5A74 A;  4Z1X A;  4YHX A;  3MXA A;  3C0W A;  4Z20 A;  1G9Z A;  2VBO A;  5AKN A;  1JVA A;  1DQ3 A;  4UN7 A;  3UVF A;  1G9Y A;  3HYI A;  1LWS A;  3E54 A;  4UNC A;  4AQX A;  3MIS A;  4UN9 G;  4LQ0 A;  1N3F A;  2VBO B;  1AF5 A; 
#chains in the Genus database with same CATH topology
 2EX5 A;  3FD2 A;  3C0X A;  4UNB A;  5A0W A;  4AAE A;  1R7M A;  1VDE A;  2XE0 A;  5A78 A;  5AKM A;  1DFA A;  3HYJ A;  1T9I A;  3MXB B;  4UNA A;  3MIP A;  3OOL A;  5AK9 A;  2XE0 B;  4KZS A;  3KO2 A;  4EFJ A;  1N3E A;  2CW8 A;  4D6O A;  5E5S A;  5AKF A;  2VS8 A;  4YIS A;  4LOX A;  4AAF A;  2VBL A;  4UN8 G;  5E67 A;  2I3P A;  1LWT A;  1UM2 A;  4UN9 A;  2VBJ A;  2F4L A;  2VBL B;  4YIT A;  2VBN A;  1EF0 A;  2QOJ Z;  1U0C A;  1BP7 A;  2O7M A;  3R7P A;  4UN8 A;  1MOW A;  3OOR A;  4AQU A;  3MX9 A;  2DCH X;  4UT0 A;  2VBN B;  1B24 A;  1M5X A;  5E63 A;  4AAD A;  1P8K Z;  1T9J A;  3EH8 A;  2VS7 A;  2FLD A;  5A0M A;  5E5O A;  3QQY A;  4UN7 G;  1U0D A;  4D6N A;  4AAB A;  2AB5 A;  4AAG A;  4Z1Z A;  3MXB A;  2CW7 A;  2VBJ B;  5A77 A;  5A0M B;  5A72 A;  2I3Q A;  5A74 A;  4Z1X A;  4YHX A;  3MXA A;  3C0W A;  4Z20 A;  1G9Z A;  2VBO A;  5AKN A;  1JVA A;  1DQ3 A;  4UN7 A;  3UVF A;  1G9Y A;  3HYI A;  1LWS A;  3E54 A;  4UNC A;  4AQX A;  3MIS A;  4UN9 G;  4LQ0 A;  1N3F A;  2VBO B;  1AF5 A; 
#chains in the Genus database with same CATH homology
 2EX5 A;  3FD2 A;  3C0X A;  4UNB A;  5A0W A;  4AAE A;  1R7M A;  1VDE A;  2XE0 A;  5A78 A;  5AKM A;  1DFA A;  3HYJ A;  1T9I A;  3MXB B;  4UNA A;  3MIP A;  3OOL A;  5AK9 A;  2XE0 B;  3KO2 A;  4EFJ A;  1N3E A;  2CW8 A;  4D6O A;  5E5S A;  5AKF A;  2VS8 A;  4YIS A;  4LOX A;  4AAF A;  2VBL A;  4UN8 G;  5E67 A;  2I3P A;  1LWT A;  1UM2 A;  4UN9 A;  2VBJ A;  2VBL B;  4YIT A;  2VBN A;  1EF0 A;  2QOJ Z;  1U0C A;  1BP7 A;  2O7M A;  3R7P A;  4UN8 A;  1MOW A;  3OOR A;  4AQU A;  3MX9 A;  2DCH X;  4UT0 A;  2VBN B;  1B24 A;  1M5X A;  5E63 A;  4AAD A;  1P8K Z;  1T9J A;  3EH8 A;  2VS7 A;  2FLD A;  5A0M A;  5E5O A;  3QQY A;  4UN7 G;  1U0D A;  4D6N A;  4AAB A;  2AB5 A;  4AAG A;  4Z1Z A;  3MXB A;  2CW7 A;  2VBJ B;  5A77 A;  5A0M B;  5A72 A;  2I3Q A;  5A74 A;  4Z1X A;  4YHX A;  3MXA A;  3C0W A;  4Z20 A;  1G9Z A;  2VBO A;  5AKN A;  1JVA A;  1DQ3 A;  4UN7 A;  3UVF A;  1G9Y A;  3HYI A;  1LWS A;  3E54 A;  4UNC A;  4AQX A;  3MIS A;  4UN9 G;  4LQ0 A;  1N3F A;  2VBO B;  1AF5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2I3PA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations