2OLQ | Genus

Total Genus 178

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	178
sequence length	535
structure length	535
Chain Sequence	GLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSMMNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRVSYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRISIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQEKAETLAKLFIDNFDKYTDTPAGAALVAAGPKL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Lyase
source organism	Escherichia coli
publication title	How does an enzyme recognize CO2? pubmed doi rcsb
molecule keywords	Phosphoenolpyruvate carboxykinase
total genus	178
structure length	535
sequence length	535
ec nomenclature	ec 4.1.1.49: Phosphoenolpyruvate carboxykinase (ATP).
pdb deposition date	2007-01-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01293	PEPCK_ATP	Phosphoenolpyruvate carboxykinase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.8.10	Mainly Beta	Beta Complex	Phosphoenolpyruvate Carboxykinase; domain 2	Phosphoenolpyruvate Carboxykinase, domain 2	2olqA02
3.40.449.10	Alpha Beta	3-Layer(aba) Sandwich	Phosphoenolpyruvate Carboxykinase; domain 1	Phosphoenolpyruvate Carboxykinase, domain 1	2olqA01
3.90.228.20	Alpha Beta	Alpha-Beta Complex	Phosphoenolpyruvate Carboxykinase; domain 3	Phosphoenolpyruvate Carboxykinase; domain 3	2olqA03

4OX2A 1NHXA 1AYLA 4GNLA 4WIUA 1J3BA 4GMZA 3MOHA 4RCGA 2OLRA 2QEYA 2PC9A 2RK8A 2RK7A 4GMUA 4YW8A 2QF2A 2RKEA 2ZCIA 1YVYA 4GNOA 2RKAA 3MOFA 2QF1A 5FH1A 4YWBA 1KHEA 2QZYA 5FH3A 3DT7A 3DTBA 4YW9A 5FH2A 5FH4A 5FH5A 1II2A 1YLHA 2GMVA 3DT2A 1XKVA 1KHGA 1OENA 1YGGA 4GMWA 4WPUA 2FAFA 2PY7X 4GMMA 2OLQA 4WOUA 2QEWA 2PXZX 1K3CA 4GNPA 4R43A 4WL8A 4WIEA 1KHFA 5I67A 5FH0A 2FAHA 1K3DA 4WPVA 1AQ2A 2RKDA 3DT4A 1YTMA 4GNQA 3MOEA 1M51A 1OS1A 4GNMA 4WPTA 4YWDA 1KHBA
chains in the Genus database with same CATH superfamily

4OX2A 4TJYA 4R5WA 4HKIA 4L7RA 4BUAA 2RCWA 4J1ZA 4L09A 4RCGA 4L6SA 5LYHA 4HHZA 2QEYA 4UVXA 4L0BA 4UX4A 3W51A 2RK7A 4L2KA 3UH4A 4BU5A 4GMUA 4J3MA 4PAXA 2QF2A 2RKEA 4HKNA 3CE0A 3P0NA 1YVYA 4I9IA 4HLFA 2QF1A 3DT7A 5FH2A 1GS0A 5C5RA 4TKFA 4PNTA 4BJCA 2GMVA 1XKVA 4HLKA 1OENA 4HLHA 4J22A 4L32A 4M7BA 4GMMA 4N3RA 4PMLA 5ADSA 4UI5A 5AEHA 5I67A 4AVWA 4U6AA 4PNQA 1K3DA 4L33A 3KCZA 4GV2A 4L10A 3UDDA 4HKKA 4ZZXA 5ADRA 5EBTA 1PAXA 3P0PA 1A26A 4HL5A 4OQBC 3L3LA 4HMHA 1NHXA 1AYLA 4UW1A 5AL5A 4UVUA 1J3BA 4GMZA 5A00A 4BUIA 3SMIA 4UNDA 4BUFA 5AL2A 4BUDA 4W6EA 2PC9A 3GJWA 2PQFA 3C49A 5C5QA 3KR8A 4F1LA 4BU6A 4UVVA 4BU7A 2ZCIA 4R6EA 4BUUA 4W5IA 4UVPA 3MHKA 5AKWA 5FH1A 4TKGA 5FH3A 1KHEA 4GV7A 4L0SA 4TVJA 3DTBA 4YW9A 4L70A 5FH4A 4UVTA 4KRSA 5AKUA 5ETYA 4BU8A 4TKIA 5FPFA 1KHGA 4J21A 5FH5A 2OLQA 2QEWA 4R43A 4GNPA 3MHJA 4N4TA 4WIEA 4L2FA 5LXPA 4OA7A 4HHYA 2FAHA 2X5YA 4LI8A 4WPVA 4GV0A 4LI7A 1AQ2A 4PY4A 4UFYA 5AL4A 4DVIA 4UVOA 2RKDA 4F1QA 4TORA 4L7PA 4BU9A 2PAXA 4BS4A 5LX6A 4WPTA 3U9HA 3U9YA 4GNLA 4L34A 3MOHA 3KR7A 4L6ZA 4PNSA 2RK8A 4L2GA 4BUWA 4UVSA 3GN7A 4BJ9A 4L7NA 4BUEA 4HYFA 2RF5A 4UI6A 4GNOA 1WOKA 4BUXA 3UH2A 3BLJA 4UXBA 4BUYA 5ADQA 1II2A 4IUEA 5AL3A 4GMWA 1YGGA 4WPUA 3L3MA 4KZUA 4L7OA 2PY7X 3GEYA 4UUHA 1UK1A 4BFPA 2PXZX 4WL8A 1KHFA 3PAXA 4UVWA 4L0TA 4W5SA 4TK0A 4L0VA 4UVZA 2RD6A 3FHBA 4TK5A 3DT4A 1YTMA 4UI3A 4BUVA 5AL1A 1M51A 4L0IA 3MOFA 3P0QA 4F0EA 4J3LA 4YWDA 4UHGA 4MT9A 1KHBA 4ZZYA 1UK0A 4PNNA 4MSKA 4RV6A 5FPGA 4BJBA 4WIUA 4PNMA 4TOSA 5ADTA 4N4VA 4PNLA 2OLRA 2PAWA 4TJWA 4GV4A 4UI7A 4UI4A 4YW8A 3C4HA 4AVUA 3UA9A 4BUSA 5ECEA 4DQYC 4BU3A 2RKAA 4PNRA 3KJDA 4UVLA 4UVNA 4ZZZA 4X52A 4YWBA 4OQAC 2QZYA 4KZQA 4PJTA 4UI8A 1YLHA 3DT2A 4TJUA 4K4FA 4K4EA 4KZLA 4WOUA 4LI6A 2FAFA 3GOYA 4HLMA 5DCZA 1K3CA 4L31A 4L7LA 4PJVA 4UFUA 5C5PA 3SE2A 4UVYA 5FH0A 4XHUA 3HKVA 4BUTA 3SMJA 4OPXC 1EFYA 4HLGA 4GNQA 3MOEA 1OS1A 4GNMA 4MSGA 4L7UA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4OX2 A;  1NHX A;  1AYL A;  4GNL A;  4WIU A;  1J3B A;  4GMZ A;  3MOH A;  4RCG A;  2OLR A;  2QEY A;  2PC9 A;  2RK8 A;  2RK7 A;  4GMU A;  4YW8 A;  2QF2 A;  2RKE A;  2ZCI A;  1YVY A;  4GNO A;  2RKA A;  3MOF A;  2QF1 A;  5FH1 A;  4YWB A;  1KHE A;  2QZY A;  5FH3 A;  3DT7 A;  3DTB A;  4YW9 A;  5FH2 A;  5FH4 A;  5FH5 A;  1II2 A;  1YLH A;  2GMV A;  3DT2 A;  1XKV A;  1KHG A;  1OEN A;  1YGG A;  4GMW A;  4WPU A;  2FAF A;  2PY7 X;  4GMM A;  2OLQ A;  4WOU A;  2QEW A;  2PXZ X;  1K3C A;  4GNP A;  4R43 A;  4WL8 A;  4WIE A;  1KHF A;  5I67 A;  5FH0 A;  2FAH A;  1K3D A;  4WPV A;  1AQ2 A;  2RKD A;  3DT4 A;  1YTM A;  4GNQ A;  3MOE A;  1M51 A;  1OS1 A;  4GNM A;  4WPT A;  4YWD A;  1KHB A; 
#chains in the Genus database with same CATH topology
 4OX2 A;  4TJY A;  4R5W A;  4HKI A;  4L7R A;  4BUA A;  2RCW A;  4J1Z A;  4L09 A;  4RCG A;  4L6S A;  5LYH A;  4HHZ A;  2QEY A;  4UVX A;  4L0B A;  4UX4 A;  3W51 A;  2RK7 A;  4L2K A;  3UH4 A;  4BU5 A;  4GMU A;  4J3M A;  4PAX A;  2QF2 A;  2RKE A;  4HKN A;  3CE0 A;  3P0N A;  1YVY A;  4I9I A;  4HLF A;  2QF1 A;  3DT7 A;  5FH2 A;  1GS0 A;  5C5R A;  4TKF A;  4PNT A;  4BJC A;  2GMV A;  1XKV A;  4HLK A;  1OEN A;  4HLH A;  4J22 A;  4L32 A;  4M7B A;  4GMM A;  4N3R A;  4PML A;  5ADS A;  4UI5 A;  5AEH A;  5I67 A;  4AVW A;  4U6A A;  4PNQ A;  1K3D A;  4L33 A;  3KCZ A;  4GV2 A;  4L10 A;  3UDD A;  4HKK A;  4ZZX A;  5ADR A;  5EBT A;  1PAX A;  3P0P A;  1A26 A;  4HL5 A;  4OQB C;  3L3L A;  4HMH A;  1NHX A;  1AYL A;  4UW1 A;  5AL5 A;  4UVU A;  1J3B A;  4GMZ A;  5A00 A;  4BUI A;  3SMI A;  4UND A;  4BUF A;  5AL2 A;  4BUD A;  4W6E A;  2PC9 A;  3GJW A;  2PQF A;  3C49 A;  5C5Q A;  3KR8 A;  4F1L A;  4BU6 A;  4UVV A;  4BU7 A;  2ZCI A;  4R6E A;  4BUU A;  4W5I A;  4UVP A;  3MHK A;  5AKW A;  5FH1 A;  4TKG A;  5FH3 A;  1KHE A;  4GV7 A;  4L0S A;  4TVJ A;  3DTB A;  4YW9 A;  4L70 A;  5FH4 A;  4UVT A;  4KRS A;  5AKU A;  5ETY A;  4BU8 A;  4TKI A;  5FPF A;  1KHG A;  4J21 A;  5FH5 A;  2OLQ A;  2QEW A;  4R43 A;  4GNP A;  3MHJ A;  4N4T A;  4WIE A;  4L2F A;  5LXP A;  4OA7 A;  4HHY A;  2FAH A;  2X5Y A;  4LI8 A;  4WPV A;  4GV0 A;  4LI7 A;  1AQ2 A;  4PY4 A;  4UFY A;  5AL4 A;  4DVI A;  4UVO A;  2RKD A;  4F1Q A;  4TOR A;  4L7P A;  4BU9 A;  2PAX A;  4BS4 A;  5LX6 A;  4WPT A;  3U9H A;  3U9Y A;  4GNL A;  4L34 A;  3MOH A;  3KR7 A;  4L6Z A;  4PNS A;  2RK8 A;  4L2G A;  4BUW A;  4UVS A;  3GN7 A;  4BJ9 A;  4L7N A;  4BUE A;  4HYF A;  2RF5 A;  4UI6 A;  4GNO A;  1WOK A;  4BUX A;  3UH2 A;  3BLJ A;  4UXB A;  4BUY A;  5ADQ A;  1II2 A;  4IUE A;  5AL3 A;  4GMW A;  1YGG A;  4WPU A;  3L3M A;  4KZU A;  4L7O A;  2PY7 X;  3GEY A;  4UUH A;  1UK1 A;  4BFP A;  2PXZ X;  4WL8 A;  1KHF A;  3PAX A;  4UVW A;  4L0T A;  4W5S A;  4TK0 A;  4L0V A;  4UVZ A;  2RD6 A;  3FHB A;  4TK5 A;  3DT4 A;  1YTM A;  4UI3 A;  4BUV A;  5AL1 A;  1M51 A;  4L0I A;  3MOF A;  3P0Q A;  4F0E A;  4J3L A;  4YWD A;  4UHG A;  4MT9 A;  1KHB A;  4ZZY A;  1UK0 A;  4PNN A;  4MSK A;  4RV6 A;  5FPG A;  4BJB A;  4WIU A;  4PNM A;  4TOS A;  5ADT A;  4N4V A;  4PNL A;  2OLR A;  2PAW A;  4TJW A;  4GV4 A;  4UI7 A;  4UI4 A;  4YW8 A;  3C4H A;  4AVU A;  3UA9 A;  4BUS A;  5ECE A;  4DQY C;  4BU3 A;  2RKA A;  4PNR A;  3KJD A;  4UVL A;  4UVN A;  4ZZZ A;  4X52 A;  4YWB A;  4OQA C;  2QZY A;  4KZQ A;  4PJT A;  4UI8 A;  1YLH A;  3DT2 A;  4TJU A;  4K4F A;  4K4E A;  4KZL A;  4WOU A;  4LI6 A;  2FAF A;  3GOY A;  4HLM A;  5DCZ A;  1K3C A;  4L31 A;  4L7L A;  4PJV A;  4UFU A;  5C5P A;  3SE2 A;  4UVY A;  5FH0 A;  4XHU A;  3HKV A;  4BUT A;  3SMJ A;  4OPX C;  1EFY A;  4HLG A;  4GNQ A;  3MOE A;  1OS1 A;  4GNM A;  4MSG A;  4L7U A; 
#chains in the Genus database with same CATH homology
 4OX2 A;  4TJY A;  4R5W A;  4HKI A;  4L7R A;  4BUA A;  2RCW A;  4J1Z A;  4L09 A;  4RCG A;  4L6S A;  5LYH A;  4HHZ A;  2QEY A;  4UVX A;  4L0B A;  4UX4 A;  3W51 A;  2RK7 A;  4L2K A;  3UH4 A;  4BU5 A;  4GMU A;  4J3M A;  4PAX A;  2QF2 A;  2RKE A;  4HKN A;  3CE0 A;  3P0N A;  1YVY A;  4I9I A;  4HLF A;  2QF1 A;  3DT7 A;  5FH2 A;  1GS0 A;  5C5R A;  4TKF A;  4PNT A;  4BJC A;  2GMV A;  1XKV A;  4HLK A;  1OEN A;  4HLH A;  4J22 A;  4L32 A;  4M7B A;  4GMM A;  4N3R A;  4PML A;  5ADS A;  4UI5 A;  5AEH A;  5I67 A;  4AVW A;  4U6A A;  4PNQ A;  1K3D A;  4L33 A;  3KCZ A;  4GV2 A;  4L10 A;  3UDD A;  4HKK A;  4ZZX A;  5ADR A;  5EBT A;  1PAX A;  3P0P A;  1A26 A;  4HL5 A;  4OQB C;  3L3L A;  4HMH A;  1NHX A;  1AYL A;  4UW1 A;  5AL5 A;  4UVU A;  1J3B A;  4GMZ A;  5A00 A;  4BUI A;  3SMI A;  4UND A;  4BUF A;  5AL2 A;  4BUD A;  4W6E A;  2PC9 A;  3GJW A;  2PQF A;  3C49 A;  5C5Q A;  3KR8 A;  4F1L A;  4BU6 A;  4UVV A;  4BU7 A;  2ZCI A;  4R6E A;  4BUU A;  4W5I A;  4UVP A;  3MHK A;  5AKW A;  5FH1 A;  4TKG A;  5FH3 A;  1KHE A;  4GV7 A;  4L0S A;  4TVJ A;  3DTB A;  4YW9 A;  4L70 A;  5FH4 A;  4UVT A;  4KRS A;  5AKU A;  5ETY A;  4BU8 A;  4TKI A;  5FPF A;  1KHG A;  4J21 A;  5FH5 A;  2OLQ A;  2QEW A;  4R43 A;  4GNP A;  3MHJ A;  4N4T A;  4WIE A;  4L2F A;  5LXP A;  4OA7 A;  4HHY A;  2FAH A;  2X5Y A;  4LI8 A;  4WPV A;  4GV0 A;  4LI7 A;  1AQ2 A;  4PY4 A;  4UFY A;  5AL4 A;  4DVI A;  4UVO A;  2RKD A;  4F1Q A;  4TOR A;  4L7P A;  4BU9 A;  2PAX A;  4BS4 A;  5LX6 A;  4WPT A;  3U9H A;  3U9Y A;  4GNL A;  4L34 A;  3MOH A;  3KR7 A;  4L6Z A;  4PNS A;  2RK8 A;  4L2G A;  4BUW A;  4UVS A;  3GN7 A;  4BJ9 A;  4L7N A;  4BUE A;  4HYF A;  2RF5 A;  4UI6 A;  4GNO A;  1WOK A;  4BUX A;  3UH2 A;  3BLJ A;  4UXB A;  4BUY A;  5ADQ A;  1II2 A;  4IUE A;  5AL3 A;  4GMW A;  1YGG A;  4WPU A;  3L3M A;  4KZU A;  4L7O A;  2PY7 X;  3GEY A;  4UUH A;  1UK1 A;  4BFP A;  2PXZ X;  4WL8 A;  1KHF A;  3PAX A;  4UVW A;  4L0T A;  4W5S A;  4TK0 A;  4L0V A;  4UVZ A;  2RD6 A;  3FHB A;  4TK5 A;  3DT4 A;  1YTM A;  4UI3 A;  4BUV A;  5AL1 A;  1M51 A;  4L0I A;  3MOF A;  3P0Q A;  4F0E A;  4J3L A;  4YWD A;  4UHG A;  4MT9 A;  1KHB A;  4ZZY A;  1UK0 A;  4PNN A;  4MSK A;  4RV6 A;  5FPG A;  4BJB A;  4WIU A;  4PNM A;  4TOS A;  5ADT A;  4N4V A;  4PNL A;  2OLR A;  2PAW A;  4TJW A;  4GV4 A;  4UI7 A;  4UI4 A;  4YW8 A;  3C4H A;  4AVU A;  3UA9 A;  4BUS A;  5ECE A;  4DQY C;  4BU3 A;  2RKA A;  4PNR A;  3KJD A;  4UVL A;  4UVN A;  4ZZZ A;  4X52 A;  4YWB A;  4OQA C;  2QZY A;  4KZQ A;  4PJT A;  4UI8 A;  1YLH A;  3DT2 A;  4TJU A;  4K4F A;  4K4E A;  4KZL A;  4WOU A;  4LI6 A;  2FAF A;  3GOY A;  4HLM A;  5DCZ A;  1K3C A;  4L31 A;  4L7L A;  4PJV A;  4UFU A;  5C5P A;  3SE2 A;  4UVY A;  5FH0 A;  4XHU A;  3HKV A;  4BUT A;  3SMJ A;  4OPX C;  1EFY A;  4HLG A;  4GNQ A;  3MOE A;  1OS1 A;  4GNM A;  4MSG A;  4L7U A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2OLQA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations