The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
210
|
sequence length |
613
|
structure length |
613
|
Chain Sequence |
DFSAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESKTVIITQEQRDTVPIPKSGQSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIGYVPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Lyase
|
| molecule keywords |
Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
|
| publication title |
Structures of rat cytosolic PEPCK: insight into the mechanism of phosphorylation and decarboxylation of oxaloacetic acid.
pubmed doi rcsb |
| source organism |
Rattus norvegicus
|
| total genus |
210
|
| structure length |
613
|
| sequence length |
613
|
| chains with identical sequence |
B
|
| ec nomenclature |
ec
4.1.1.32: Phosphoenolpyruvate carboxykinase (GTP). |
| pdb deposition date | 2007-06-26 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00821 | PEPCK_GTP | Phosphoenolpyruvate carboxykinase C-terminal P-loop domain |
| A | PF17297 | PEPCK_N | Phosphoenolpyruvate carboxykinase N-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Beta Complex | Phosphoenolpyruvate Carboxykinase; domain 2 | Phosphoenolpyruvate Carboxykinase, domain 2 | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Phosphoenolpyruvate Carboxykinase; domain 1 | Phosphoenolpyruvate Carboxykinase, domain 1 | ||
| Alpha Beta | Alpha-Beta Complex | Phosphoenolpyruvate Carboxykinase; domain 3 | Phosphoenolpyruvate Carboxykinase; domain 3 |
#chains in the Genus database with same CATH superfamily 1YVY A; 2RK8 A; 1XKV A; 3MOF A; 1M51 A; 3DT2 A; 2OLQ A; 3DTB A; 4GNL A; 4WPT A; 4WPU A; 4GMM A; 1K3C A; 2QF1 A; 4YW9 A; 4YW8 A; 5I67 A; 2RKD A; 2PY7 X; 2RKE A; 4GMW A; 2GMV A; 1KHF A; 1OS1 A; 4GNM A; 2FAF A; 4GNQ A; 5FH4 A; 2QEY A; 1AQ2 A; 3DT4 A; 1NHX A; 3DT7 A; 5FH0 A; 4WOU A; 1AYL A; 4WIU A; 4GNO A; 2PXZ X; 4WL8 A; 4WPV A; 5FH3 A; 2FAH A; 4WIE A; 4GMU A; 1KHB A; 1KHG A; 1K3D A; 1YLH A; 1II2 A; 3MOH A; 3MOE A; 1J3B A; 4OX2 A; 5FH2 A; 5FH5 A; 1YTM A; 2OLR A; 2QF2 A; 2ZCI A; 1KHE A; 2QZY A; 2RK7 A; 4GNP A; 4GMZ A; 4YWD A; 4R43 A; 2QEW A; 1OEN A; 4RCG A; 1YGG A; 2PC9 A; 2RKA A; 5FH1 A; 4YWB A; #chains in the Genus database with same CATH topology 4J22 A; 1YVY A; 4L0T A; 4N4T A; 4TK5 A; 3KR7 A; 3PAX A; 4UFY A; 5EBT A; 4L7O A; 4W5I A; 4TOR A; 4HHY A; 3GEY A; 3KR8 A; 4L2G A; 4TKG A; 4ZZX A; 4F0E A; 5FPG A; 4UI5 A; 4HHZ A; 4BS4 A; 5I67 A; 4BUF A; 3BLJ A; 4L6Z A; 4TJW A; 4W6E A; 5LXP A; 4UVL A; 4UX4 A; 2FAF A; 3P0N A; 1GS0 A; 4L10 A; 4L70 A; 4N4V A; 4BU7 A; 1AYL A; 4WIU A; 4GNO A; 4PJT A; 5ADS A; 4WIE A; 3GOY A; 5AKU A; 4OPX C; 3UH4 A; 4HLG A; 1J3B A; 5FH2 A; 5AL2 A; 4BUX A; 2QF2 A; 2ZCI A; 2QZY A; 2RK7 A; 4GMZ A; 3C49 A; 3C4H A; 4RV6 A; 4LI6 A; 4PJV A; 3KCZ A; 1YGG A; 4UVS A; 4IUE A; 3GN7 A; 5FH1 A; 4YWB A; 4PY4 A; 4UI6 A; 1XKV A; 1A26 A; 3MOF A; 1M51 A; 4BU9 A; 4J21 A; 2OLQ A; 4BJ9 A; 4ZZZ A; 4UVV A; 4UVW A; 3UDD A; 4R5W A; 4UND A; 3CE0 A; 2RKE A; 2RF5 A; 4GMW A; 3HKV A; 4HKN A; 4K4E A; 4I9I A; 1OS1 A; 4GNM A; 4UVY A; 4GNQ A; 2PAW A; 4L09 A; 4ZZY A; 2QEY A; 1NHX A; 4MSK A; 1UK0 A; 4L7P A; 4WOU A; 4UI3 A; 3L3M A; 1UK1 A; 4L31 A; 5C5R A; 3UH2 A; 4BFP A; 2FAH A; 4UVU A; 4HMH A; 3P0Q A; 3U9H A; 4L2K A; 1II2 A; 3MOH A; 4HYF A; 4OX2 A; 5LX6 A; 1PAX A; 4F1L A; 4PNS A; 4OQA C; 2OLR A; 3L3L A; 4L0B A; 2RD6 A; 3P0P A; 4UVX A; 4BUI A; 4HLM A; 4BU8 A; 4BUS A; 3W51 A; 5C5Q A; 4UVP A; 4BUV A; 4UFU A; 4UVT A; 2RK8 A; 4TVJ A; 4BUD A; 5LYH A; 5AEH A; 3DT2 A; 1WOK A; 4UI8 A; 4HLH A; 4GNL A; 4HLK A; 4WPT A; 4MSG A; 4WPU A; 4GV0 A; 4MT9 A; 4TJU A; 4GMM A; 4L7R A; 4TOS A; 4UW1 A; 3MHK A; 3UA9 A; 4BUW A; 2PAX A; 1EFY A; 2RKD A; 5ADQ A; 4HL5 A; 4DVI A; 2GMV A; 1KHF A; 4HKI A; 4TJY A; 5AKW A; 1AQ2 A; 4TKF A; 3DT4 A; 4KZQ A; 3DT7 A; 5FH0 A; 4L2F A; 4UVO A; 4WPV A; 4KZU A; 4WL8 A; 4BJC A; 4K4F A; 4HLF A; 4L33 A; 4PNL A; 4N3R A; 4KRS A; 1KHG A; 4UVN A; 1YLH A; 2RCW A; 4L0I A; 4GV4 A; 4PNM A; 5AL3 A; 5ETY A; 3FHB A; 5AL5 A; 1KHE A; 5AL1 A; 3SMJ A; 4PAX A; 4BUE A; 4UUH A; 4BUT A; 4BUU A; 2QEW A; 1OEN A; 4HKK A; 4TKI A; 3GJW A; 4L6S A; 4PML A; 4UI4 A; 4BUY A; 5C5P A; 4L0S A; 4LI8 A; 4OA7 A; 4PNN A; 3DTB A; 3U9Y A; 4L32 A; 4L7L A; 4L7N A; 1K3C A; 4PNT A; 4UVZ A; 2QF1 A; 4TK0 A; 4YW9 A; 4YW8 A; 4W5S A; 5ECE A; 5ADT A; 2PY7 X; 4J1Z A; 4AVU A; 4F1Q A; 4PNR A; 4BU3 A; 4X52 A; 4BUA A; 5AL4 A; 4M7B A; 4BU5 A; 2PQF A; 4UHG A; 4DQY C; 5FH4 A; 2X5Y A; 3KJD A; 5ADR A; 4L0V A; 4J3M A; 5FH3 A; 5A00 A; 4BU6 A; 2PXZ X; 4LI7 A; 4GMU A; 4J3L A; 1KHB A; 1K3D A; 4GV2 A; 3MOE A; 4GV7 A; 4KZL A; 4PNQ A; 4BJB A; 5FH5 A; 1YTM A; 4U6A A; 4GNP A; 4YWD A; 3SE2 A; 3SMI A; 4OQB C; 4AVW A; 4R43 A; 3MHJ A; 4L34 A; 4L7U A; 4RCG A; 4R6E A; 4UXB A; 4XHU A; 4UI7 A; 2PC9 A; 5FPF A; 2RKA A; 5DCZ A; #chains in the Genus database with same CATH homology 4J22 A; 1YVY A; 4L0T A; 4N4T A; 4TK5 A; 3KR7 A; 3PAX A; 4UFY A; 5EBT A; 4L7O A; 4W5I A; 4TOR A; 4HHY A; 3GEY A; 3KR8 A; 4L2G A; 4TKG A; 4ZZX A; 4F0E A; 5FPG A; 4UI5 A; 4HHZ A; 4BS4 A; 5I67 A; 4BUF A; 3BLJ A; 4L6Z A; 4TJW A; 4W6E A; 5LXP A; 4UVL A; 4UX4 A; 2FAF A; 3P0N A; 1GS0 A; 4L10 A; 4L70 A; 4N4V A; 4BU7 A; 1AYL A; 4WIU A; 4GNO A; 4PJT A; 5ADS A; 4WIE A; 3GOY A; 5AKU A; 4OPX C; 3UH4 A; 4HLG A; 1J3B A; 5FH2 A; 5AL2 A; 4BUX A; 2QF2 A; 2ZCI A; 2QZY A; 2RK7 A; 4GMZ A; 3C49 A; 3C4H A; 4RV6 A; 4LI6 A; 4PJV A; 3KCZ A; 1YGG A; 4UVS A; 4IUE A; 3GN7 A; 5FH1 A; 4YWB A; 4PY4 A; 4UI6 A; 1XKV A; 1A26 A; 3MOF A; 1M51 A; 4BU9 A; 4J21 A; 2OLQ A; 4BJ9 A; 4ZZZ A; 4UVV A; 4UVW A; 3UDD A; 4R5W A; 4UND A; 3CE0 A; 2RKE A; 2RF5 A; 4GMW A; 3HKV A; 4HKN A; 4K4E A; 4I9I A; 1OS1 A; 4GNM A; 4UVY A; 4GNQ A; 2PAW A; 4L09 A; 4ZZY A; 2QEY A; 1NHX A; 4MSK A; 1UK0 A; 4L7P A; 4WOU A; 4UI3 A; 3L3M A; 1UK1 A; 4L31 A; 5C5R A; 3UH2 A; 4BFP A; 2FAH A; 4UVU A; 4HMH A; 3P0Q A; 3U9H A; 4L2K A; 1II2 A; 3MOH A; 4HYF A; 4OX2 A; 5LX6 A; 1PAX A; 4F1L A; 4PNS A; 4OQA C; 2OLR A; 3L3L A; 4L0B A; 2RD6 A; 3P0P A; 4UVX A; 4BUI A; 4HLM A; 4BU8 A; 4BUS A; 3W51 A; 5C5Q A; 4UVP A; 4BUV A; 4UFU A; 4UVT A; 2RK8 A; 4TVJ A; 4BUD A; 5LYH A; 5AEH A; 3DT2 A; 1WOK A; 4UI8 A; 4HLH A; 4GNL A; 4HLK A; 4WPT A; 4MSG A; 4WPU A; 4GV0 A; 4MT9 A; 4TJU A; 4GMM A; 4L7R A; 4TOS A; 4UW1 A; 3MHK A; 3UA9 A; 4BUW A; 2PAX A; 1EFY A; 2RKD A; 5ADQ A; 4HL5 A; 4DVI A; 2GMV A; 1KHF A; 4HKI A; 4TJY A; 5AKW A; 1AQ2 A; 4TKF A; 3DT4 A; 4KZQ A; 3DT7 A; 5FH0 A; 4L2F A; 4UVO A; 4WPV A; 4KZU A; 4WL8 A; 4BJC A; 4K4F A; 4HLF A; 4L33 A; 4PNL A; 4N3R A; 4KRS A; 1KHG A; 4UVN A; 1YLH A; 2RCW A; 4L0I A; 4GV4 A; 4PNM A; 5AL3 A; 5ETY A; 3FHB A; 5AL5 A; 1KHE A; 5AL1 A; 3SMJ A; 4PAX A; 4BUE A; 4UUH A; 4BUT A; 4BUU A; 2QEW A; 1OEN A; 4HKK A; 4TKI A; 3GJW A; 4L6S A; 4PML A; 4UI4 A; 4BUY A; 5C5P A; 4L0S A; 4LI8 A; 4OA7 A; 4PNN A; 3DTB A; 3U9Y A; 4L32 A; 4L7L A; 4L7N A; 1K3C A; 4PNT A; 4UVZ A; 2QF1 A; 4TK0 A; 4YW9 A; 4YW8 A; 4W5S A; 5ECE A; 5ADT A; 2PY7 X; 4J1Z A; 4AVU A; 4F1Q A; 4PNR A; 4BU3 A; 4X52 A; 4BUA A; 5AL4 A; 4M7B A; 4BU5 A; 2PQF A; 4UHG A; 4DQY C; 5FH4 A; 2X5Y A; 3KJD A; 5ADR A; 4L0V A; 4J3M A; 5FH3 A; 5A00 A; 4BU6 A; 2PXZ X; 4LI7 A; 4GMU A; 4J3L A; 1KHB A; 1K3D A; 4GV2 A; 3MOE A; 4GV7 A; 4KZL A; 4PNQ A; 4BJB A; 5FH5 A; 1YTM A; 4U6A A; 4GNP A; 4YWD A; 3SE2 A; 3SMI A; 4OQB C; 4AVW A; 4R43 A; 3MHJ A; 4L34 A; 4L7U A; 4RCG A; 4R6E A; 4UXB A; 4XHU A; 4UI7 A; 2PC9 A; 5FPF A; 2RKA A; 5DCZ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
